Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8514751.1

Orthogroup ID

OG0004626

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3764

Gene Structure 3764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8514751.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1770 bp

atgaagaattttgcagcagcccttgttcagatgatggaaaaaaatgtaagggtgcaatcacatgttggaggccacagacttttccagtggtcttgtcttcttcttagcaagagtaaattcgccacagtttccaagaatgcattctgtagagttggcacagtgcaggcatcattacttcatattgttgtacaaacatctctcagtgagcaacgggcatgcaagaagacattttatcacttactttctcagtcgccggacatctacaagttgtatatagaggagttgaaggaagcacgcatcccatacaaagatagtcctgaattattatggttcttgatggaattctcaagtacctcaagaaaatcatcttctttgtttgaacaatgcaagccaatatttcttgatatatatctcaaggcaattttaaacgcaaaagaaaagccagcaaagggtcttagcgaagctttttgtccactttttcggcatatgttgcatgaagattttcaaaatgttgtgcttccatcttctgttaaaatgctgaaacgcaaccctgagattgtattggaatcagttggcattctcttgaagtcagtcaaccttgatttgagcaagtatgctgtcgaaatcctttcactggtcttgccacaggctcggcatgcagatgaaggccggagggttggtgcactggaaattgtacgatgtctgagccaaaattctagtaatccagatgctatagaagcaatggtcaatgctgtcaaatctgtccttggaggctcagagggaagacttgcatttccttaccagagaattggcatgatcaatgcactgcaagaattgtgtaatgctccagatgggaagcaccttaatagactgtcacagacctcatgcaattaccttcgatcttgttacaaggaggatggcaatgaggaggtcaagcttgcaattttgtcagctctaggttcgtgggcagcaagatctgctgatgttgttcagtcagatttagtttcttttttgtcttctgggcttaaggagaaagaagctctaagaagagggcatcttcgttgtctaagagccatatgcagaaatacagatgctgtttatcggttatcatcattactagaacctctcattcaacttgtcaaaactggttttactaaaggagttcagcgtttggatggtatatatgccttgctattagttggcaaaattgcagcagttgacatcaaagcagaggagaccgtgatgaaggaaaagatctggtctgtgatatctcaaaatgagccatcccttcttccaatatccttggcttcaaaattgttgactgaggactgcatggcatgtgtcgatcttcttgaagtcatgctggtggaacatttgcagagggcgttggattccttttctgtcagatcactgtcacagttgataatatttttcatgtgccacccatgttgggatattcgaagaatggcttataatgctaccaaaaagatagttgctgctgccccacaattagctgaacatcttttgattgaattcacgactttcatgtctgtagttgaggagaaacatcgtatttcaaagtcaagtgatacagatagttcattggactcccaagtaccgttccttccctcggtagaggtttcagtaaaggctttacttgttatatcatcagcagttctacctgcagctccaagtgcatcaatgcgagttttattatgcggacatcatccatacttagttggaactgcaaaaagagatgcagtttggagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

590

Amino Acids

65.78

Weight (kDa)

8.91

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64790 AT1G64790 AT1G64790
fragaria_vesca	FvH4_6g01410 FvH4_6g01410
malus_domestica	MD04G1233800.v1.1 MD04G1233900.v1.1 MD04G1234100.v1.1 MD12G1252000.v1.1
prunus_persica	Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1
pyrus_communis	pycom04g20770 pycom04g20790 pycom07g20320 pycom12g23140
rosa_chinensis	RchiOBHm_Chr3g0449041 RchiOBHm_Chr6g0282721
rosa_laevigata	RLG00000025859
rosa_multiflora	Rmu_co8514751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427150 Rroxscaffold_7G00190110
rosa_rugosa	Rorug02G0617500
rosa_samantha	Rh3AG016000 Rh3BG016200 Rh3CG015200 Rh3DG016500
rosa_wichuraiana	Rw3G001200 Rw5G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1473
AasI	GACNNNNNNGTC	1 cut(s)	1546
Acc36I	ACCTGC	1 cut(s)	1690
AciI	CCGC	1 cut(s)	1719
AcsI	RAATTY	5 cut(s)	7, 116, 341, 712, 1532
AfaI	GTAC	4 cut(s)	189, 352, 696, 1617
AfiI	CCNNNNNNNGG	4 cut(s)	449, 634, 1450, 1630
AflII	CTTAAG	1 cut(s)	1025
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	9 cut(s)	286, 380, 506, 586, 1133, 1311, 1355, 1532, 1578
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	6 cut(s)	464, 937, 953, 1040, 1514, 1688
AluI	AGCT	6 cut(s)	464, 937, 953, 1040, 1514, 1688
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	1 cut(s)	1229
Alw44I	GTGCAC	1 cut(s)	681
AlwNI	CAGNNNCTG	1 cut(s)	1094
AoxI	GGCC	2 cut(s)	70, 667
ApaLI	GTGCAC	1 cut(s)	681
ApeKI	GCWGC	7 cut(s)	14, 17, 968, 1211, 1496, 1499, 1685
ApoI	RAATTY	5 cut(s)	7, 116, 341, 712, 1532
Asp700I	GAANNNNTTC	2 cut(s)	140, 501
AsuII	TTCGAA	1 cut(s)	1459
BaeGI	GKGCMC	1 cut(s)	685
BarI	GAAGNNNNNNTAC	2 cut(s)	1608, 1640
BbsI	GAAGAC	4 cut(s)	89, 230, 790, 1008
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	7 cut(s)	26, 29, 980, 1223, 1483, 1486, 1697
BccI	CCATC	7 cut(s)	28, 331, 529, 845, 911, 1169, 1291
BclI	TGATCA	1 cut(s)	816
BcoDI	GTCTC	1 cut(s)	1229
BfaI	CTAG	3 cut(s)	717, 956, 1118
BfmI	CTRYAG	4 cut(s)	145, 732, 1551, 1683
BfrI	CTTAAG	1 cut(s)	1025
BfuAI	ACCTGC	1 cut(s)	1690
BglII	AGATCT	2 cut(s)	974, 1254
BisI	GCNGC	7 cut(s)	15, 18, 969, 1212, 1497, 1500, 1686
BlsI	GCNGC	7 cut(s)	16, 19, 970, 1213, 1498, 1501, 1687
BmsI	GCATC	7 cut(s)	176, 306, 718, 1063, 1081, 1706, 1747
BpiI	GAAGAC	4 cut(s)	89, 230, 790, 1008
BpmI	CTGGAG	1 cut(s)	831
Bpu14I	TTCGAA	1 cut(s)	1459
BpuEI	CTTGAG	3 cut(s)	331, 340, 398
BsaBI	GATNNNNATC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	1229
BsaJI	CCNNGG	3 cut(s)	766, 1302, 1629
BsaXI	ACNNNNNCTCC	2 cut(s)	664, 694
Bsc4I	CCNNNNNNNGG	4 cut(s)	449, 634, 1450, 1630
Bse1I	ACTGG	4 cut(s)	85, 639, 690, 1150
Bse3DI	GCAATG	2 cut(s)	747, 928
Bse8I	GATNNNNATC	1 cut(s)	408
BseDI	CCNNGG	3 cut(s)	766, 1302, 1629
BseGI	GGATG	5 cut(s)	297, 922, 1180, 1283, 1726
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	4 cut(s)	449, 634, 1450, 1630
BseMI	GCAATG	2 cut(s)	747, 928
BseMII	CTCAG	6 cut(s)	214, 260, 543, 695, 789, 1314
BseNI	ACTGG	4 cut(s)	85, 639, 690, 1150
BseRI	GAGGAG	4 cut(s)	293, 941, 1247, 1574
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	7 cut(s)	26, 29, 980, 1223, 1483, 1486, 1697
BsgI	GTGCAG	1 cut(s)	182
BshFI	GGCC	2 cut(s)	72, 669
BsiHKAI	GWGCWC	1 cut(s)	685
BsiSI	CCGG	2 cut(s)	254, 670
BslI	CCNNNNNNNGG	4 cut(s)	449, 634, 1450, 1630
BsmAI	GTCTC	1 cut(s)	1229
BsmI	GAATGC	3 cut(s)	140, 142, 576
BsnI	GGCC	2 cut(s)	72, 669
Bso31I	GGTCTC	1 cut(s)	1229
Bsp119I	TTCGAA	1 cut(s)	1459
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp1407I	TGTACA	1 cut(s)	187
Bsp143I	GATC	6 cut(s)	816, 899, 974, 1254, 1345, 1406
BspACI	CCGC	1 cut(s)	1719
BspANI	GGCC	2 cut(s)	72, 669
BspCNI	CTCAG	6 cut(s)	213, 259, 544, 696, 788, 1315
BspMAI	CTGCAG	1 cut(s)	1687
BspMI	ACCTGC	1 cut(s)	1690
BspT104I	TTCGAA	1 cut(s)	1459
BspTI	CTTAAG	1 cut(s)	1025
BspTNI	GGTCTC	1 cut(s)	1229
BsrDI	GCAATG	2 cut(s)	747, 928
BsrGI	TGTACA	1 cut(s)	187
BsrI	ACTGG	4 cut(s)	85, 639, 690, 1150
BssECI	CCNNGG	3 cut(s)	766, 1302, 1629
BssMI	GATC	6 cut(s)	816, 899, 974, 1254, 1345, 1406
BssT1I	CCWWGG	2 cut(s)	766, 1302
Bst4CI	ACNGT	7 cut(s)	127, 160, 873, 1240, 1413, 1419, 1620
Bst6I	CTCTTC	1 cut(s)	1042
BstAFI	CTTAAG	1 cut(s)	1025
BstAPI	GCANNNNNTGC	2 cut(s)	490, 977
BstAUI	TGTACA	1 cut(s)	187
BstBI	TTCGAA	1 cut(s)	1459
BstC8I	GCNNGC	7 cut(s)	165, 217, 295, 389, 444, 657, 939
BstF5I	GGATG	5 cut(s)	297, 922, 1180, 1283, 1726
BstKTI	GATC	6 cut(s)	819, 902, 977, 1257, 1348, 1409
BstMAI	GTCTC	1 cut(s)	1229
BstMBI	GATC	6 cut(s)	816, 899, 974, 1254, 1345, 1406
BstMWI	GCNNNNNNNGC	6 cut(s)	490, 656, 737, 977, 1475, 1694
BstNSI	RCATGY	4 cut(s)	65, 219, 659, 1341
BstSFI	CTRYAG	4 cut(s)	145, 732, 1551, 1683
BstSLI	GKGCMC	1 cut(s)	685
BstV1I	GCAGC	7 cut(s)	26, 29, 980, 1223, 1483, 1486, 1697
BstV2I	GAAGAC	4 cut(s)	89, 230, 790, 1008
BstX2I	RGATCY	2 cut(s)	974, 1254
BstXI	CCANNNNNNTGG	1 cut(s)	809
BstYI	RGATCY	2 cut(s)	974, 1254
BsuRI	GGCC	2 cut(s)	72, 669
BtsCI	GGATG	5 cut(s)	297, 922, 1180, 1283, 1726
BtsI	GCAGTG	1 cut(s)	824
BtsIMutI	CAGTG	7 cut(s)	92, 165, 208, 632, 683, 824, 1409
BveI	ACCTGC	1 cut(s)	1690
Cac8I	GCNNGC	7 cut(s)	165, 217, 295, 389, 444, 657, 939
CaiI	CAGNNNCTG	1 cut(s)	1094
Csp6I	GTAC	4 cut(s)	188, 351, 695, 1616
CspCI	CAANNNNNGTGG	2 cut(s)	1430, 1465
CviQI	GTAC	4 cut(s)	188, 351, 695, 1616
DpnI	GATC	6 cut(s)	818, 901, 976, 1256, 1347, 1408
DpnII	GATC	6 cut(s)	816, 899, 974, 1254, 1345, 1406
DraI	TTTAAA	1 cut(s)	426
DrdI	GACNNNNNNGTC	1 cut(s)	1546
DseDI	GACNNNNNNGTC	1 cut(s)	1546
Eam1104I	CTCTTC	1 cut(s)	1042
EarI	CTCTTC	1 cut(s)	1042
Eco130I	CCWWGG	2 cut(s)	766, 1302
Eco31I	GGTCTC	1 cut(s)	1229
Eco32I	GATATC	1 cut(s)	1269
EcoRI	GAATTC	2 cut(s)	341, 1532
EcoRV	GATATC	1 cut(s)	1269
EcoT14I	CCWWGG	2 cut(s)	766, 1302
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	2 cut(s)	766, 1302
FalI	AAGNNNNNCTT	2 cut(s)	1453, 1485
FauNDI	CATATG	2 cut(s)	486, 1076
FbaI	TGATCA	1 cut(s)	816
Fnu4HI	GCNGC	7 cut(s)	15, 18, 969, 1212, 1497, 1500, 1686
FokI	GGATG	5 cut(s)	284, 929, 1187, 1270, 1713
Fsp4HI	GCNGC	7 cut(s)	15, 18, 969, 1212, 1497, 1500, 1686
FspBI	CTAG	3 cut(s)	717, 956, 1118
GluI	GCNGC	7 cut(s)	15, 18, 969, 1212, 1497, 1500, 1686
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	2 cut(s)	72, 669
HapII	CCGG	2 cut(s)	254, 670
HincII	GTYRAC	3 cut(s)	595, 1219, 1320
HindII	GTYRAC	3 cut(s)	595, 1219, 1320
HindIII	AAGCTT	2 cut(s)	462, 935
HinfI	GANTC	3 cut(s)	566, 1391, 1607
HpaII	CCGG	2 cut(s)	254, 670
Hpy166II	GTNNAC	5 cut(s)	473, 595, 683, 1219, 1320
Hpy188I	TCNGA	5 cut(s)	30, 705, 778, 997, 1406
Hpy188III	TCNNGA	9 cut(s)	317, 334, 357, 401, 583, 725, 848, 1352, 1537
Hpy8I	GTNNAC	5 cut(s)	473, 595, 683, 1219, 1320
HpyAV	CCTTC	6 cut(s)	280, 659, 905, 1240, 1298, 1634
HpyCH4III	ACNGT	7 cut(s)	127, 160, 873, 1240, 1413, 1419, 1620
HpyF10VI	GCNNNNNNNGC	6 cut(s)	490, 656, 737, 977, 1475, 1694
Ksp22I	TGATCA	1 cut(s)	816
Kzo9I	GATC	6 cut(s)	816, 899, 974, 1254, 1345, 1406
LmnI	GCTCC	2 cut(s)	850, 1693
Lsp1109I	GCAGC	7 cut(s)	26, 29, 980, 1223, 1483, 1486, 1697
LweI	GCATC	7 cut(s)	176, 306, 718, 1063, 1081, 1706, 1747
MaeI	CTAG	3 cut(s)	717, 956, 1118
MaeIII	GTNAC	3 cut(s)	873, 905, 1413
MalI	GATC	6 cut(s)	818, 901, 976, 1256, 1347, 1408
MboI	GATC	6 cut(s)	816, 899, 974, 1254, 1345, 1406
MflI	RGATCY	2 cut(s)	974, 1254
MhlI	GDGCHC	1 cut(s)	685
MlyI	GAGTC	1 cut(s)	1601
MmeI	TCCRAC	3 cut(s)	46, 1368, 1720
Mph1103I	ATGCAT	1 cut(s)	142
MroXI	GAANNNNTTC	2 cut(s)	140, 501
MseI	TTAA	4 cut(s)	425, 531, 864, 1026
MslI	CAYNNNNRTG	2 cut(s)	660, 1364
MspCI	CTTAAG	1 cut(s)	1025
MspI	CCGG	2 cut(s)	254, 670
Mva1269I	GAATGC	3 cut(s)	140, 142, 576
MwoI	GCNNNNNNNGC	6 cut(s)	490, 656, 737, 977, 1475, 1694
NdeI	CATATG	2 cut(s)	486, 1076
NdeII	GATC	6 cut(s)	816, 899, 974, 1254, 1345, 1406
NmeAIII	GCCGAG	1 cut(s)	631
NmuCI	GTSAC	2 cut(s)	873, 1413
NsiI	ATGCAT	1 cut(s)	142
NspI	RCATGY	4 cut(s)	65, 219, 659, 1341
NspV	TTCGAA	1 cut(s)	1459
PaeI	GCATGC	2 cut(s)	219, 659
PciI	ACATGT	1 cut(s)	61
PctI	GAATGC	3 cut(s)	140, 142, 576
PdmI	GAANNNNTTC	2 cut(s)	140, 501
PfeI	GAWTC	2 cut(s)	566, 1391
PkrI	GCNGC	7 cut(s)	16, 19, 970, 1213, 1498, 1501, 1687
PleI	GAGTC	1 cut(s)	1601
PpsI	GAGTC	1 cut(s)	1601
PscI	ACATGT	1 cut(s)	61
PsiI	TTATAA	1 cut(s)	1473
PstI	CTGCAG	1 cut(s)	1687
PstNI	CAGNNNCTG	1 cut(s)	1094
PsuI	RGATCY	2 cut(s)	974, 1254
RsaI	GTAC	4 cut(s)	189, 352, 696, 1617
RsaNI	GTAC	4 cut(s)	188, 351, 695, 1616
RseI	CAYNNNNRTG	2 cut(s)	660, 1364
SaqAI	TTAA	4 cut(s)	425, 531, 864, 1026
SatI	GCNGC	7 cut(s)	15, 18, 969, 1212, 1497, 1500, 1686
Sau3AI	GATC	6 cut(s)	816, 899, 974, 1254, 1345, 1406
SchI	GAGTC	1 cut(s)	1601
SduI	GDGCHC	1 cut(s)	685
SfaNI	GCATC	7 cut(s)	176, 306, 718, 1063, 1081, 1706, 1747
SfcI	CTRYAG	4 cut(s)	145, 732, 1551, 1683
SfuI	TTCGAA	1 cut(s)	1459
SmiMI	CAYNNNNRTG	2 cut(s)	660, 1364
SmlI	CTYRAG	4 cut(s)	346, 355, 413, 1025
SmoI	CTYRAG	4 cut(s)	346, 355, 413, 1025
SphI	GCATGC	2 cut(s)	219, 659
SsiI	CCGC	1 cut(s)	1719
SspI	AATATT	2 cut(s)	396, 1428
SspMI	CTAG	3 cut(s)	717, 956, 1118
StyI	CCWWGG	2 cut(s)	766, 1302
TaaI	ACNGT	7 cut(s)	127, 160, 873, 1240, 1413, 1419, 1620
TaqI	TCGA	4 cut(s)	621, 898, 1344, 1459
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	2 cut(s)	566, 1391
Tru1I	TTAA	4 cut(s)	425, 531, 864, 1026
Tru9I	TTAA	4 cut(s)	425, 531, 864, 1026
TscAI	CASTG	7 cut(s)	92, 165, 208, 639, 690, 831, 1416
TseFI	GTSAC	2 cut(s)	873, 1413
TseI	GCWGC	7 cut(s)	14, 17, 968, 1211, 1496, 1499, 1685
Tsp45I	GTSAC	2 cut(s)	873, 1413
TspDTI	ATGAA	8 cut(s)	17, 167, 510, 678, 1259, 1423, 1534, 1590
TspRI	CASTG	7 cut(s)	92, 165, 208, 639, 690, 831, 1416
Vha464I	CTTAAG	1 cut(s)	1025
VneI	GTGCAC	1 cut(s)	681
XapI	RAATTY	5 cut(s)	7, 116, 341, 712, 1532
XceI	RCATGY	4 cut(s)	65, 219, 659, 1341
XmnI	GAANNNNTTC	2 cut(s)	140, 501
XspI	CTAG	3 cut(s)	717, 956, 1118
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.