Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004626

Physical Location & Seq

Genomic Coordinates Forward (+)

22466050 .. 22466791

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCAATATACAAGTTCACAAATTAATGCAACTTCTAGAATAGAAGTGTCTTGCGACTCGAGTCATTTATTGTTGCAAGATCACTTGATCACTCAATGCTTCTGTTTCTTATGCATTTTATTGTTGCTATTCATTTTTGTATTTCCTTTCCATTACAGGAATTCAGCAAAATGTCGTGAAAGTGCTTTACTCGGATTTGAGTGTCTCTGTGAATCACTCGGAAGACTATTTGAGTATGTAATTAAAATGTTGCCACTACTGTTGGTTTCATTCTCTGATCAAGTTGTTGCAGTTCGTGAAGGTGCCGAGTGTGCAGCTCGTGCAATGATGTGTCAACTTAGTGCTCAAGGAGTTAAACTGGTTCTTCCATCTCTTTTGAAGATAAAGCTTGGCGAACAAAGCAGTGTCCAACTGCTTGGGGCTATGGCCTATTGTGCACCTCAACAGCTGTCTCAGTGTCTCCCTAAGATTGTTCCAAAATTGACTGAGGTTTTACTTTATATGGAGTCATGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

173

Amino Acids

19.28

Weight (kDa)

6.79

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64790 AT1G64790 AT1G64790
fragaria_vesca	FvH4_6g01410 FvH4_6g01410
malus_domestica	MD04G1233800.v1.1 MD04G1233900.v1.1 MD04G1234100.v1.1 MD12G1252000.v1.1
prunus_persica	Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1
pyrus_communis	pycom04g20770 pycom04g20790 pycom07g20320 pycom12g23140
rosa_chinensis	RchiOBHm_Chr3g0449041 RchiOBHm_Chr6g0282721
rosa_laevigata	RLG00000025859
rosa_multiflora	Rmu_co8514751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427150 Rroxscaffold_7G00190110
rosa_rugosa	Rorug02G0617500
rosa_samantha	Rh3AG016000 Rh3BG016200 Rh3CG015200 Rh3DG016500
rosa_wichuraiana	Rw3G001200 Rw5G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	379
AluBI	AGCT	3 cut(s)	317, 388, 448
AluI	AGCT	3 cut(s)	317, 388, 448
Alw21I	GWGCWC	2 cut(s)	346, 439
Alw26I	GTCTC	3 cut(s)	209, 456, 464
Alw44I	GTGCAC	1 cut(s)	435
Ama87I	CYCGRG	1 cut(s)	58
AoxI	GGCC	1 cut(s)	426
ApaLI	GTGCAC	1 cut(s)	435
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	160
AseI	ATTAAT	1 cut(s)	24
AvaI	CYCGRG	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	302
BauI	CACGAG	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	346, 439
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	1 cut(s)	376
BclI	TGATCA	2 cut(s)	87, 277
BcoDI	GTCTC	3 cut(s)	209, 456, 464
BfaI	CTAG	1 cut(s)	36
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	304
BoxI	GACNNNNGTC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	467, 477
BseNI	ACTGG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	428
BshNI	GGYRCC	1 cut(s)	302
BsiHKAI	GWGCWC	2 cut(s)	346, 439
BsiHKCI	CYCGRG	1 cut(s)	58
BsmAI	GTCTC	3 cut(s)	209, 456, 464
BsnI	GGCC	1 cut(s)	428
BsoBI	CYCGRG	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	346, 439
Bsp143I	GATC	3 cut(s)	79, 87, 277
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	2 cut(s)	466, 478
BspLI	GGNNCC	1 cut(s)	304
BspT107I	GGYRCC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	363
BssMI	GATC	3 cut(s)	79, 87, 277
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstDEI	CTNAG	4 cut(s)	338, 453, 465, 486
BstKTI	GATC	3 cut(s)	82, 90, 280
BstMAI	GTCTC	3 cut(s)	209, 456, 464
BstMBI	GATC	3 cut(s)	79, 87, 277
BstMWI	GCNNNNNNNGC	4 cut(s)	311, 320, 399, 434
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	229
BstXI	CCANNNNNNTGG	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	428
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	409, 461
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	2 cut(s)	510, 516
CviJI	RGCY	5 cut(s)	317, 388, 422, 428, 448
CviKI_1	RGCY	5 cut(s)	317, 388, 422, 428, 448
DdeI	CTNAG	4 cut(s)	338, 453, 465, 486
DpnI	GATC	3 cut(s)	81, 89, 279
DpnII	GATC	3 cut(s)	79, 87, 277
Eco88I	CYCGRG	1 cut(s)	58
EcoRI	GAATTC	1 cut(s)	160
EcoT22I	ATGCAT	1 cut(s)	116
FaeI	CATG	2 cut(s)	513, 519
FaiI	YATR	8 cut(s)	9, 112, 237, 425, 501, 503, 511, 517
FatI	CATG	2 cut(s)	509, 515
FbaI	TGATCA	2 cut(s)	87, 277
Fnu4HI	GCNGC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	428
Hin1II	CATG	2 cut(s)	513, 519
HincII	GTYRAC	1 cut(s)	335
HindII	GTYRAC	1 cut(s)	335
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	4 cut(s)	56, 61, 212, 506
Hpy166II	GTNNAC	3 cut(s)	17, 335, 437
Hpy188I	TCNGA	3 cut(s)	194, 221, 277
Hpy188III	TCNNGA	3 cut(s)	36, 176, 296
Hpy8I	GTNNAC	3 cut(s)	17, 335, 437
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	8 cut(s)	4, 29, 76, 114, 290, 314, 323, 437
HpyF10VI	GCNNNNNNNGC	4 cut(s)	311, 320, 399, 434
HpyF3I	CTNAG	4 cut(s)	338, 453, 465, 486
Hsp92II	CATG	2 cut(s)	513, 519
Ksp22I	TGATCA	2 cut(s)	87, 277
Kzo9I	GATC	3 cut(s)	79, 87, 277
LpnPI	CCDG	2 cut(s)	142, 344
Lsp1109I	GCAGC	1 cut(s)	326
MaeI	CTAG	1 cut(s)	36
MalI	GATC	3 cut(s)	81, 89, 279
MboI	GATC	3 cut(s)	79, 87, 277
MboII	GAAGA	3 cut(s)	234, 356, 391
MhlI	GDGCHC	2 cut(s)	346, 439
MluCI	AATT	4 cut(s)	21, 160, 240, 479
MlyI	GAGTC	3 cut(s)	50, 70, 515
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	2 cut(s)	450, 481
Mph1103I	ATGCAT	1 cut(s)	116
MseI	TTAA	3 cut(s)	24, 243, 354
MslI	CAYNNNNRTG	1 cut(s)	514
MspA1I	CMGCKG	1 cut(s)	448
MwoI	GCNNNNNNNGC	4 cut(s)	311, 320, 399, 434
NdeII	GATC	3 cut(s)	79, 87, 277
NlaIII	CATG	2 cut(s)	513, 519
NlaIV	GGNNCC	1 cut(s)	304
NmeAIII	GCCGAG	1 cut(s)	331
NsiI	ATGCAT	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	3 cut(s)	50, 69, 514
PpsI	GAGTC	3 cut(s)	50, 69, 514
PshAI	GACNNNNGTC	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	304
PspXI	VCTCGAGB	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	514
SaqAI	TTAA	3 cut(s)	24, 243, 354
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	3 cut(s)	79, 87, 277
SchI	GAGTC	3 cut(s)	50, 70, 515
SduI	GDGCHC	2 cut(s)	346, 439
SetI	ASST	6 cut(s)	304, 319, 390, 442, 450, 492
Sfr274I	CTCGAG	1 cut(s)	58
SlaI	CTCGAG	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	514
SmlI	CTYRAG	2 cut(s)	58, 345
SmoI	CTYRAG	2 cut(s)	58, 345
Sse9I	AATT	4 cut(s)	21, 160, 240, 479
SspMI	CTAG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	59
TasI	AATT	4 cut(s)	21, 160, 240, 479
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	3 cut(s)	24, 243, 354
Tru9I	TTAA	3 cut(s)	24, 243, 354
TscAI	CASTG	2 cut(s)	409, 461
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	121, 258
TspRI	CASTG	2 cut(s)	409, 461
VneI	GTGCAC	1 cut(s)	435
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	1 cut(s)	160
XbaI	TCTAGA	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	58
XspI	CTAG	1 cut(s)	36
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.