Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004626

Physical Location & Seq

Genomic Coordinates Forward (+)

73559186 .. 73560759

Gene Structure 1574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0617500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGACAAGCCGTGTCCAGATGCGTTTTCCGAAAAAGCCCAGGATTCCTGAAAAGAAGAATAGCATACCGCTGCTTGAAAAGATTTTGAGCATGCTCTATGTCAGTGTCACAAAAGCGGAAAGGGAGGTGCTGGTGGATGCTATGATAGATGCTCGTGCAATCAGACATGTTGCTGCGTTTGATTTGGAGCAACCGGTTACAACATTAAGGGCAGCTTGTGATGCGTTGAGAAACAGACGTGGCACGTTTGGTCCAGTGGATGTGCCCGAGCTAACTCAAGCTGAAGTTGGAGCAAAATGGGATGAGGCTGATAAGACAGGTCAAAAGGGGAAGTGGTTTGTTGTTAAAGAGGGAGATGTTCAGGCAAAACAGGATGATCTTCAGGAGCTGGTCCAACCTGGAATTGGTCTGAGCGAATGTGGTTCATTCTTTGTACTCATCAACAGTCACTCAACCTGGTACAAAGAACTGGTGTTTGCAAGACTAGCGCAAGGAATTACCGAAAGGGAATTGTTGAACTCTCTCTGCAAGACGCCCTCTCTCTTCAAGACACCATATGGCTGCGATGCCGATGATTGTGTATTTTCTCCCTGGACTGCTGATAAGGTTGTGAATTTGCATGAGCAGGCTATAAACAAATGGCACGGCAGTACAGAATGGCAGTTCAATTGCATTGGGGAACATTTGGTGCCCAGTTCAAATAAATTGGTAAGAGTGATTGACAAGGTAAAATGGCCCCCCGCTTACAGAGTGATTGAAGCAAGAGAATTCTGGGCGGAGAGGGGGAAGAACTTGTATAATGTTGGTATAGTTTTAGACTTTGCTAATGACCGGTATGAAGAAGTAGACGAAAAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

286

Amino Acids

32.55

Weight (kDa)

6.26

Isoelectric Point (pI)

26.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64790 AT1G64790 AT1G64790
fragaria_vesca	FvH4_6g01410 FvH4_6g01410
malus_domestica	MD04G1233800.v1.1 MD04G1233900.v1.1 MD04G1234100.v1.1 MD12G1252000.v1.1
prunus_persica	Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1
pyrus_communis	pycom04g20770 pycom04g20790 pycom07g20320 pycom12g23140
rosa_chinensis	RchiOBHm_Chr3g0449041 RchiOBHm_Chr6g0282721
rosa_laevigata	RLG00000025859
rosa_multiflora	Rmu_co8514751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427150 Rroxscaffold_7G00190110
rosa_rugosa	Rorug02G0617500
rosa_samantha	Rh3AG016000 Rh3BG016200 Rh3CG015200 Rh3DG016500
rosa_wichuraiana	Rw3G001200 Rw5G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	688
AccI	GTMKAC	1 cut(s)	846
AciI	CCGC	4 cut(s)	68, 116, 741, 776
AcsI	RAATTY	2 cut(s)	613, 767
AcuI	CTGAAG	2 cut(s)	303, 365
AcyI	GRCGYC	1 cut(s)	533
AfaI	GTAC	3 cut(s)	435, 461, 652
AfiI	CCNNNNNNNGG	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	166
AgeI	ACCGGT	2 cut(s)	193, 831
AgsI	TTSAA	6 cut(s)	77, 517, 547, 667, 699, 758
AjiI	CACGTC	1 cut(s)	239
AjnI	CCWGG	4 cut(s)	38, 397, 455, 590
AluBI	AGCT	4 cut(s)	215, 271, 281, 388
AluI	AGCT	4 cut(s)	215, 271, 281, 388
AlwNI	CAGNNNCTG	1 cut(s)	388
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	734
ApeKI	GCWGC	4 cut(s)	70, 173, 212, 561
ApoI	RAATTY	2 cut(s)	613, 767
AsiGI	ACCGGT	2 cut(s)	193, 831
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	3 cut(s)	251, 391, 735
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	251, 391
BaeGI	GKGCMC	2 cut(s)	267, 693
BanI	GGYRCC	1 cut(s)	688
BauI	CACGAG	1 cut(s)	153
BbvI	GCAGC	4 cut(s)	57, 160, 224, 548
BceAI	ACGGC	1 cut(s)	661
BciT130I	CCWGG	4 cut(s)	40, 399, 457, 592
BfaI	CTAG	1 cut(s)	485
BisI	GCNGC	4 cut(s)	71, 174, 213, 562
BlsI	GCNGC	4 cut(s)	72, 175, 214, 563
Bme1390I	CCNGG	4 cut(s)	40, 399, 457, 592
Bme18I	GGWCC	2 cut(s)	251, 391
BmeT110I	CYCGRG	1 cut(s)	266
BmgBI	CACGTC	1 cut(s)	239
BmgT120I	GGNCC	3 cut(s)	251, 391, 735
BmiI	GGNNCC	2 cut(s)	690, 737
BmrFI	CCNGG	4 cut(s)	40, 399, 457, 592
BmrI	ACTGGG	1 cut(s)	687
BmsI	GCATC	5 cut(s)	9, 127, 139, 211, 556
BmuI	ACTGGG	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	261
BsaHI	GRCGYC	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	38, 590
BsaWI	WCCGGW	2 cut(s)	193, 831
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse118I	RCCGGY	2 cut(s)	193, 831
Bse1I	ACTGG	3 cut(s)	254, 474, 693
BseBI	CCWGG	4 cut(s)	40, 399, 457, 592
BseDI	CCNNGG	2 cut(s)	38, 590
BseGI	GGATG	4 cut(s)	142, 265, 307, 379
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	401
BseNI	ACTGG	3 cut(s)	254, 474, 693
BseSI	GKGCMC	2 cut(s)	267, 693
BseXI	GCAGC	4 cut(s)	57, 160, 224, 548
BshFI	GGCC	1 cut(s)	736
BshNI	GGYRCC	1 cut(s)	688
BshTI	ACCGGT	2 cut(s)	193, 831
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	194, 832
BslI	CCNNNNNNNGG	1 cut(s)	404
BsnI	GGCC	1 cut(s)	736
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	267, 693
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	4 cut(s)	68, 116, 741, 776
BspANI	GGCC	1 cut(s)	736
BspCNI	CTCAG	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	690, 737
BspT107I	GGYRCC	1 cut(s)	688
BsrFI	RCCGGY	2 cut(s)	193, 831
BsrI	ACTGG	3 cut(s)	254, 474, 693
BssAI	RCCGGY	2 cut(s)	193, 831
BssECI	CCNNGG	2 cut(s)	38, 590
BssMI	GATC	1 cut(s)	376
BssNI	GRCGYC	1 cut(s)	533
BssSI	CACGAG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	153
Bst2UI	CCWGG	4 cut(s)	40, 399, 457, 592
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	548
BstACI	GRCGYC	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	92, 627
BstDEI	CTNAG	1 cut(s)	410
BstF5I	GGATG	4 cut(s)	142, 265, 307, 379
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	1 cut(s)	379
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 485
BstNI	CCWGG	4 cut(s)	40, 399, 457, 592
BstNSI	RCATGY	2 cut(s)	94, 170
BstSCI	CCNGG	4 cut(s)	38, 397, 455, 590
BstSLI	GKGCMC	2 cut(s)	267, 693
BstV1I	GCAGC	4 cut(s)	57, 160, 224, 548
BsuRI	GGCC	1 cut(s)	736
BtgZI	GCGATG	1 cut(s)	579
BtrI	CACGTC	1 cut(s)	239
BtsCI	GGATG	4 cut(s)	142, 265, 307, 379
BtsIMutI	CAGTG	2 cut(s)	109, 261
Cac8I	GCNNGC	2 cut(s)	92, 627
CaiI	CAGNNNCTG	1 cut(s)	388
CfoI	GCGC	1 cut(s)	490
Cfr10I	RCCGGY	2 cut(s)	193, 831
Cfr13I	GGNCC	3 cut(s)	251, 391, 735
CseI	GACGC	1 cut(s)	541
CsiI	ACCWGGT	1 cut(s)	455
Csp6I	GTAC	3 cut(s)	434, 460, 651
CspAI	ACCGGT	2 cut(s)	193, 831
CviAII	CATG	3 cut(s)	91, 167, 620
CviQI	GTAC	3 cut(s)	434, 460, 651
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
EciI	GGCGGA	1 cut(s)	791
Eco47I	GGWCC	2 cut(s)	251, 391
Eco57I	CTGAAG	2 cut(s)	303, 365
Eco88I	CYCGRG	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	767
EcoRII	CCWGG	4 cut(s)	38, 397, 455, 590
FaeI	CATG	3 cut(s)	94, 170, 623
FalI	AAGNNNNNCTT	2 cut(s)	199, 231
FatI	CATG	3 cut(s)	90, 166, 619
FauI	CCCGC	1 cut(s)	748
FauNDI	CATATG	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	4 cut(s)	71, 174, 213, 562
FokI	GGATG	4 cut(s)	149, 272, 314, 386
Fsp4HI	GCNGC	4 cut(s)	71, 174, 213, 562
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	4 cut(s)	71, 174, 213, 562
HaeIII	GGCC	1 cut(s)	736
HapII	CCGG	2 cut(s)	194, 832
HgaI	GACGC	1 cut(s)	541
HhaI	GCGC	1 cut(s)	490
Hin1I	GRCGYC	1 cut(s)	533
Hin1II	CATG	3 cut(s)	94, 170, 623
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	2 cut(s)	194, 832
Hpy166II	GTNNAC	1 cut(s)	847
Hpy188I	TCNGA	3 cut(s)	30, 164, 411
Hpy188III	TCNNGA	4 cut(s)	16, 47, 383, 547
Hpy8I	GTNNAC	1 cut(s)	847
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	2 cut(s)	238, 245
HpyCH4V	TGCA	5 cut(s)	158, 479, 528, 619, 672
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 485
HpyF3I	CTNAG	1 cut(s)	410
HpySE526I	ACGT	2 cut(s)	238, 245
Hsp92I	GRCGYC	1 cut(s)	533
Hsp92II	CATG	3 cut(s)	94, 170, 623
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	3 cut(s)	187, 290, 385
Lsp1109I	GCAGC	4 cut(s)	57, 160, 224, 548
LweI	GCATC	5 cut(s)	9, 127, 139, 211, 556
MabI	ACCWGGT	1 cut(s)	455
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	2 cut(s)	238, 245
MaeIII	GTNAC	3 cut(s)	106, 196, 446
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	5 cut(s)	67, 371, 535, 799, 851
MfeI	CAATTG	1 cut(s)	667
MhlI	GDGCHC	2 cut(s)	267, 693
MluCI	AATT	8 cut(s)	402, 495, 509, 613, 667, 704, 767, 854
MmeI	TCCRAC	2 cut(s)	268, 418
MnlI	CCTC	5 cut(s)	118, 298, 343, 547, 774
MseI	TTAA	2 cut(s)	206, 345
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	2 cut(s)	194, 832
MspR9I	CCNGG	4 cut(s)	40, 399, 457, 592
MunI	CAATTG	1 cut(s)	667
MvaI	CCWGG	4 cut(s)	40, 399, 457, 592
MwoI	GCNNNNNNNGC	2 cut(s)	221, 485
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	3 cut(s)	94, 170, 623
NlaIV	GGNNCC	2 cut(s)	690, 737
NmuCI	GTSAC	2 cut(s)	106, 446
NspI	RCATGY	2 cut(s)	94, 170
PaeI	GCATGC	1 cut(s)	94
PciI	ACATGT	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	43
PinAI	ACCGGT	2 cut(s)	193, 831
PkrI	GCNGC	4 cut(s)	72, 175, 214, 563
PscI	ACATGT	1 cut(s)	166
Psp6I	CCWGG	4 cut(s)	38, 397, 455, 590
PspGI	CCWGG	4 cut(s)	38, 397, 455, 590
PspN4I	GGNNCC	2 cut(s)	690, 737
PspPI	GGNCC	3 cut(s)	251, 391, 735
PstNI	CAGNNNCTG	1 cut(s)	388
RsaI	GTAC	3 cut(s)	435, 461, 652
RsaNI	GTAC	3 cut(s)	434, 460, 651
SaqAI	TTAA	2 cut(s)	206, 345
SatI	GCNGC	4 cut(s)	71, 174, 213, 562
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	3 cut(s)	251, 391, 735
ScrFI	CCNGG	4 cut(s)	40, 399, 457, 592
SduI	GDGCHC	2 cut(s)	267, 693
SexAI	ACCWGGT	1 cut(s)	455
SfaNI	GCATC	5 cut(s)	9, 127, 139, 211, 556
SinI	GGWCC	2 cut(s)	251, 391
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SphI	GCATGC	1 cut(s)	94
Sse9I	AATT	8 cut(s)	402, 495, 509, 613, 667, 704, 767, 854
SsiI	CCGC	4 cut(s)	68, 116, 741, 776
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	4 cut(s)	38, 397, 455, 590
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	2 cut(s)	241, 248
TasI	AATT	8 cut(s)	402, 495, 509, 613, 667, 704, 767, 854
TatI	WGTACW	2 cut(s)	433, 650
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	2 cut(s)	206, 345
Tru9I	TTAA	2 cut(s)	206, 345
TscAI	CASTG	2 cut(s)	109, 261
TseFI	GTSAC	2 cut(s)	106, 446
TseI	GCWGC	4 cut(s)	70, 173, 212, 561
Tsp45I	GTSAC	2 cut(s)	106, 446
TspDTI	ATGAA	2 cut(s)	414, 852
TspRI	CASTG	2 cut(s)	109, 261
VpaK11BI	GGWCC	2 cut(s)	251, 391
XapI	RAATTY	2 cut(s)	613, 767
XceI	RCATGY	2 cut(s)	94, 170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	846
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.