Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004626

Physical Location & Seq

Genomic Coordinates Reverse (-)

22201648 .. 22202495

Gene Structure 848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCCTGCCCTAGTGCTGTCAAATGTATTCCTGCTGTTGCCAGTCGGTCTCTTCCTCAGAATGTTGAAGTCGCTACAGCCATATGGGTTGCTTTACATGACCCAGAAAAGTCCGTTGCAGAAGCAGCAGAGGATTTATGGGATCGGTATGGGCATGACTTTGGGACTGACTATTCAGGCCTTTTCAAAGCACTTTCCCATATCAATTATAATGTCCGTTTTGCTGCTGCGGAGGCATTAGCAGCTGCTTTGGATGAATGTCCTGATTCTATACAGGAGTCTCTTTCTACTTTATTTTCTCTGTATATCCGTGATGCTGGTTTGACTGAGGAGAATGTTGATGCTGGTTGGCTGGGTCGACAAGGTATAGCCTTAGCATTACATTCTTCTGCTGATGTACTCAGAACAAAAGACCTTCCTGTTGTTATGACATTTCTTATTTCAAGAGCACTGGTAAGATTTACATCACCGTTGTTTCGAAAGCATGAACAATGCATTCAATTGAAAAGAGATATTGTACAGTCCTTGTCAGAAAGGAGACATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

183

Amino Acids

20.08

Weight (kDa)

5.65

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64790 AT1G64790 AT1G64790
fragaria_vesca	FvH4_6g01410 FvH4_6g01410
malus_domestica	MD04G1233800.v1.1 MD04G1233900.v1.1 MD04G1234100.v1.1 MD12G1252000.v1.1
prunus_persica	Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1
pyrus_communis	pycom04g20770 pycom04g20790 pycom07g20320 pycom12g23140
rosa_chinensis	RchiOBHm_Chr3g0449041 RchiOBHm_Chr6g0282721
rosa_laevigata	RLG00000025859
rosa_multiflora	Rmu_co8514751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427150 Rroxscaffold_7G00190110
rosa_rugosa	Rorug02G0617500
rosa_samantha	Rh3AG016000 Rh3BG016200 Rh3CG015200 Rh3DG016500
rosa_wichuraiana	Rw3G001200 Rw5G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	358
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	1 cut(s)	150
AfaI	GTAC	2 cut(s)	399, 519
AgsI	TTSAA	5 cut(s)	68, 187, 444, 500, 505
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	3 cut(s)	54, 285, 532
AlwI	GGATC	1 cut(s)	150
AoxI	GGCC	2 cut(s)	3, 178
ApeKI	GCWGC	5 cut(s)	125, 224, 227, 242, 245
AsuHPI	GGTGA	1 cut(s)	459
AsuII	TTCGAA	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	5 cut(s)	137, 211, 214, 232, 254
BcoDI	GTCTC	3 cut(s)	54, 285, 532
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	5 cut(s)	126, 225, 228, 243, 246
BlsI	GCNGC	5 cut(s)	127, 226, 229, 244, 247
BmsI	GCATC	2 cut(s)	304, 331
Bpu10I	CCTNAGC	1 cut(s)	373
Bpu14I	TTCGAA	1 cut(s)	478
BsaBI	GATNNNNATC	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	54
BsaXI	ACNNNNNCTCC	1 cut(s)	529
Bse1I	ACTGG	2 cut(s)	42, 456
Bse8I	GATNNNNATC	1 cut(s)	463
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	1 cut(s)	463
BseMII	CTCAG	3 cut(s)	71, 318, 415
BseNI	ACTGG	2 cut(s)	42, 456
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	5 cut(s)	137, 211, 214, 232, 254
BseYI	CCCAGC	1 cut(s)	352
BshFI	GGCC	2 cut(s)	5, 180
BsiHKAI	GWGCWC	1 cut(s)	451
BslFI	GGGAC	1 cut(s)	178
BsmAI	GTCTC	3 cut(s)	54, 285, 532
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	5, 180
Bso31I	GGTCTC	1 cut(s)	54
Bsp119I	TTCGAA	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	2 cut(s)	5, 180
BspCNI	CTCAG	3 cut(s)	70, 319, 414
BspPI	GGATC	1 cut(s)	150
BspT104I	TTCGAA	1 cut(s)	478
BspTNI	GGTCTC	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	42, 456
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	471, 522
Bst6I	CTCTTC	1 cut(s)	57
BstAUI	TGTACA	1 cut(s)	517
BstBI	TTCGAA	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	4 cut(s)	57, 327, 373, 401
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	3 cut(s)	54, 285, 532
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 233, 242
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	5 cut(s)	137, 211, 214, 232, 254
BsuRI	GGCC	2 cut(s)	5, 180
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	398, 518
CviAII	CATG	3 cut(s)	98, 155, 485
CviJI	RGCY	6 cut(s)	5, 80, 180, 245, 352, 371
CviKI_1	RGCY	6 cut(s)	5, 80, 180, 245, 352, 371
CviQI	GTAC	2 cut(s)	398, 518
DdeI	CTNAG	4 cut(s)	57, 327, 373, 401
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	497
FaeI	CATG	3 cut(s)	101, 158, 488
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	3 cut(s)	97, 154, 484
FauNDI	CATATG	1 cut(s)	83
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	5 cut(s)	126, 225, 228, 243, 246
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	5 cut(s)	126, 225, 228, 243, 246
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	5 cut(s)	126, 225, 228, 243, 246
GsaI	CCCAGC	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	5, 180
Hin1II	CATG	3 cut(s)	101, 158, 488
HincII	GTYRAC	1 cut(s)	359
HindII	GTYRAC	1 cut(s)	359
HinfI	GANTC	2 cut(s)	266, 278
HphI	GGTGA	1 cut(s)	459
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	3 cut(s)	60, 404, 532
Hpy188III	TCNNGA	2 cut(s)	263, 444
Hpy8I	GTNNAC	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	2 cut(s)	471, 522
HpyCH4V	TGCA	2 cut(s)	119, 495
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 233, 242
HpyF3I	CTNAG	4 cut(s)	57, 327, 373, 401
Hsp92II	CATG	3 cut(s)	101, 158, 488
Kzo9I	GATC	1 cut(s)	142
Lsp1109I	GCAGC	5 cut(s)	137, 211, 214, 232, 254
LweI	GCATC	2 cut(s)	304, 331
MaeI	CTAG	1 cut(s)	12
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	44, 378
MfeI	CAATTG	1 cut(s)	500
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	2 cut(s)	205, 500
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	4 cut(s)	66, 124, 226, 322
Mph1103I	ATGCAT	1 cut(s)	497
MseI	TTAA	1 cut(s)	547
MspA1I	CMGCKG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	495
MwoI	GCNNNNNNNGC	3 cut(s)	125, 233, 242
NdeI	CATATG	1 cut(s)	83
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	3 cut(s)	101, 158, 488
NsiI	ATGCAT	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	478
PceI	AGGCCT	1 cut(s)	180
PctI	GAATGC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	5 cut(s)	127, 226, 229, 244, 247
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	399, 519
RsaNI	GTAC	2 cut(s)	398, 518
SalI	GTCGAC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	547
SatI	GCNGC	5 cut(s)	126, 225, 228, 243, 246
Sau3AI	GATC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	451
SetI	ASST	3 cut(s)	247, 367, 417
SfaNI	GCATC	2 cut(s)	304, 331
SfcI	CTRYAG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	478
Sse9I	AATT	2 cut(s)	205, 500
SseBI	AGGCCT	1 cut(s)	180
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	1 cut(s)	12
StuI	AGGCCT	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	471, 522
TaqI	TCGA	2 cut(s)	358, 478
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	205, 500
TatI	WGTACW	2 cut(s)	397, 517
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	547
Tru9I	TTAA	1 cut(s)	547
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	5 cut(s)	125, 224, 227, 242, 245
TspDTI	ATGAA	2 cut(s)	270, 501
TspGWI	ACGGA	3 cut(s)	103, 206, 299
TspRI	CASTG	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	358
XspI	CTAG	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.