Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004626

Physical Location & Seq

Genomic Coordinates Reverse (-)

31303744 .. 31305211

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1234100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGATTTTCAAAATATTGTGCTTCCATCTGCTGTTAAAATGCTGAAACGCAACCCTGAGATTGAATTGGAGTCGGTTGGGATTCTGTTGAAATCAGTCAACCTTGATTTAAGCAAGTATGCCGTCAAATTTTTTTCAGTGGTATTGCCTCAGGCTCGGCATATGGACGAAGGCAGAAGGGTTGTGGCACTGGCAGTTATACGATGCTTGAGCCAAAAGTCTAGTAATCCAGATGCCTTAGAAGCAATGTTCAATGCTGTCAAATCTGTAATTGGAGGCTCAGAGGGAAGACTTACACTTCCATATCAGAGGATTGGCATGATCAACACACTGCAAGAAATGTGTAAATCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

119

Amino Acids

13.16

Weight (kDa)

9.26

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GNC1_N	PF24993	2 - 98	3.2e-30	Stalled ribosome sensor GCN1 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64790 AT1G64790 AT1G64790
fragaria_vesca	FvH4_6g01410 FvH4_6g01410
malus_domestica	MD04G1233800.v1.1 MD04G1233900.v1.1 MD04G1234100.v1.1 MD12G1252000.v1.1
prunus_persica	Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1
pyrus_communis	pycom04g20770 pycom04g20790 pycom07g20320 pycom12g23140
rosa_chinensis	RchiOBHm_Chr3g0449041 RchiOBHm_Chr6g0282721
rosa_laevigata	RLG00000025859
rosa_multiflora	Rmu_co8514751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427150 Rroxscaffold_7G00190110
rosa_rugosa	Rorug02G0617500
rosa_samantha	Rh3AG016000 Rh3BG016200 Rh3CG015200 Rh3DG016500
rosa_wichuraiana	Rw3G001200 Rw5G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	128
AgsI	TTSAA	4 cut(s)	11, 65, 91, 253
ApoI	RAATTY	1 cut(s)	128
AxyI	CCTNAGG	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	295
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	107
BclI	TGATCA	1 cut(s)	321
BfaI	CTAG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	194, 223
BpiI	GAAGAC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	195
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	3 cut(s)	48, 164, 294
BseNI	ACTGG	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	321
BspCNI	CTCAG	3 cut(s)	49, 163, 293
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	195
BssMI	GATC	1 cut(s)	321
BstDEI	CTNAG	4 cut(s)	57, 150, 238, 280
BstKTI	GATC	1 cut(s)	324
BstMBI	GATC	1 cut(s)	321
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstV2I	GAAGAC	1 cut(s)	295
Bsu36I	CCTNAGG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	3 cut(s)	144, 188, 329
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	3 cut(s)	155, 213, 279
CviKI_1	RGCY	3 cut(s)	155, 213, 279
DdeI	CTNAG	4 cut(s)	57, 150, 238, 280
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
Eco81I	CCTNAGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	322
FaiI	YATR	7 cut(s)	120, 162, 164, 200, 304, 320, 352
FatI	CATG	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	162
FbaI	TGATCA	1 cut(s)	321
FspBI	CTAG	1 cut(s)	222
Hin1II	CATG	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	71, 82
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	283, 309
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	164, 171
HpyCH4V	TGCA	1 cut(s)	334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	4 cut(s)	57, 150, 238, 280
Hsp92II	CATG	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	321
LpnPI	CCDG	4 cut(s)	69, 137, 176, 243
LweI	GCATC	2 cut(s)	194, 223
MaeI	CTAG	1 cut(s)	222
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	1 cut(s)	300
MluCI	AATT	3 cut(s)	65, 128, 270
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	4 cut(s)	159, 269, 277, 303
MseI	TTAA	2 cut(s)	36, 110
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeI	CATATG	1 cut(s)	162
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	1 cut(s)	322
NmeAIII	GCCGAG	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	36, 110
Sau3AI	GATC	1 cut(s)	321
SchI	GAGTC	1 cut(s)	80
SetI	ASST	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	194, 223
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	3 cut(s)	65, 128, 270
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	1 cut(s)	222
TasI	AATT	3 cut(s)	65, 128, 270
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	2 cut(s)	36, 110
Tru9I	TTAA	2 cut(s)	36, 110
TscAI	CASTG	3 cut(s)	144, 195, 336
TspRI	CASTG	3 cut(s)	144, 195, 336
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.