Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004626

Physical Location & Seq

Genomic Coordinates Reverse (-)

22219760 .. 22222463

Gene Structure 2704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAAAAACAAGCGAGGCTGCAATCACATGTTGTAGGAGTAAGTTTGCCGGTCTCGAAGAATGCTATGTGTAGAGTTGCCACAGTGCAGGCATTGTTACTTAATCTTGTTATGCAGAGGTCTTTCCATGACCGAAGGGCTTACAAGAAGACATTTTGTCCCTTATTTTCTCAGTCACCAGACATCTACAAAATGTATATAGAGGAACTCAAAGATGCCCGTATCCCATACAAAGATAGTTCTGAATTAATATGGTTGTTATTAGAGTGCTCAAGTACCTCAAGCAAATCATCTTCTTTGTATGAACAATGCAAGCCAACATTTTTGGATATATATCTCAAGGCAATCTTAAATGCAAGAGAAAAGCCAGCAAGGGGCCTAAGTGAAGCTTTTCATCCACTTTTTAAACATATGTTGCACGAAGATTTTCAAAATATTGTGCTTCCATCTGCTGTTAAAATGCTGAAACGCAACCCTGAGATTGTATTGGAGTCGGTTGGGATTCTGTTGAAATCAGTCAACCTTGATTTAAGCAAGTATGCCGTTGAAATTCTTTCAGTGTATTGCCTCAGGCTCAGCATGCGGATGAAGGCAGAAGGGTTGTGGCACTGGCAGTTATACGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

210

Amino Acids

24.11

Weight (kDa)

9.13

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64790 AT1G64790 AT1G64790
fragaria_vesca	FvH4_6g01410 FvH4_6g01410
malus_domestica	MD04G1233800.v1.1 MD04G1233900.v1.1 MD04G1234100.v1.1 MD12G1252000.v1.1
prunus_persica	Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1
pyrus_communis	pycom04g20770 pycom04g20790 pycom07g20320 pycom12g23140
rosa_chinensis	RchiOBHm_Chr3g0449041 RchiOBHm_Chr6g0282721
rosa_laevigata	RLG00000025859
rosa_multiflora	Rmu_co8514751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427150 Rroxscaffold_7G00190110
rosa_rugosa	Rorug02G0617500
rosa_samantha	Rh3AG016000 Rh3BG016200 Rh3CG015200 Rh3DG016500
rosa_wichuraiana	Rw3G001200 Rw5G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	583
AcsI	RAATTY	1 cut(s)	549
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	3 cut(s)	431, 511, 548
AhdI	GACNNNNNGTC	1 cut(s)	156
AluBI	AGCT	1 cut(s)	389
AluI	AGCT	1 cut(s)	389
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	549
AseI	ATTAAT	1 cut(s)	248
Asp700I	GAANNNNTTC	2 cut(s)	390, 426
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	569
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	6
BccI	CCATC	1 cut(s)	454
BceAI	ACGGC	1 cut(s)	527
BciVI	GTATCC	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	58
BfuI	GTATCC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	20
BlpI	GCTNAGC	1 cut(s)	575
BlsI	GCNGC	1 cut(s)	21
BmeRI	GACNNNNNGTC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	1 cut(s)	377
BmsI	GCATC	2 cut(s)	205, 613
BpiI	GAAGAC	1 cut(s)	155
Bpu1102I	GCTNAGC	1 cut(s)	575
BpuEI	CTTGAG	3 cut(s)	256, 265, 323
BsaBI	GATNNNNATC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	614
Bse21I	CCTNAGG	1 cut(s)	569
Bse8I	GATNNNNATC	1 cut(s)	333
BseGI	GGATG	2 cut(s)	394, 591
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	4 cut(s)	185, 468, 583, 589
BseNI	ACTGG	1 cut(s)	614
BseXI	GCAGC	1 cut(s)	6
BsgI	GTGCAG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	378
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp1720I	GCTNAGC	1 cut(s)	575
BspACI	CCGC	1 cut(s)	583
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	4 cut(s)	184, 469, 582, 588
BspLI	GGNNCC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	614
BssAI	RCCGGY	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	85
BstC8I	GCNNGC	4 cut(s)	90, 314, 369, 581
BstDEI	CTNAG	5 cut(s)	171, 380, 477, 569, 575
BstF5I	GGATG	2 cut(s)	394, 591
BstMAI	GTCTC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	580
BstNSI	RCATGY	2 cut(s)	32, 583
BstV1I	GCAGC	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	155
Bsu36I	CCTNAGG	1 cut(s)	569
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	394, 591
BtsIMutI	CAGTG	3 cut(s)	90, 564, 607
Cac8I	GCNNGC	4 cut(s)	90, 314, 369, 581
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	3 cut(s)	29, 128, 580
CviJI	RGCY	7 cut(s)	19, 140, 316, 367, 378, 389, 574
CviKI_1	RGCY	7 cut(s)	19, 140, 316, 367, 378, 389, 574
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	5 cut(s)	171, 380, 477, 569, 575
DraI	TTTAAA	1 cut(s)	406
DriI	GACNNNNNGTC	1 cut(s)	156
Eam1105I	GACNNNNNGTC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	376
FaeI	CATG	3 cut(s)	32, 131, 583
FalI	AAGNNNNNCTT	4 cut(s)	332, 364, 373, 405
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	3 cut(s)	28, 127, 579
FauNDI	CATATG	1 cut(s)	411
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	2 cut(s)	381, 598
Fsp4HI	GCNGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	3 cut(s)	32, 131, 583
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	2 cut(s)	491, 502
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	168
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	3 cut(s)	129, 583, 590
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	6 cut(s)	22, 88, 115, 312, 356, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	580
HpyF3I	CTNAG	5 cut(s)	171, 380, 477, 569, 575
Hsp92II	CATG	3 cut(s)	32, 131, 583
LpnPI	CCDG	7 cut(s)	63, 74, 192, 381, 489, 556, 595
Lsp1109I	GCAGC	1 cut(s)	6
LweI	GCATC	2 cut(s)	205, 613
MaeIII	GTNAC	2 cut(s)	96, 174
MboII	GAAGA	4 cut(s)	70, 160, 285, 434
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	2 cut(s)	245, 549
MlyI	GAGTC	1 cut(s)	500
MnlI	CCTC	5 cut(s)	9, 111, 196, 289, 578
MroXI	GAANNNNTTC	2 cut(s)	390, 426
MseI	TTAA	6 cut(s)	102, 248, 350, 405, 456, 530
MslI	CAYNNNNRTG	1 cut(s)	584
MspI	CCGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	580
NdeI	CATATG	1 cut(s)	411
NlaIII	CATG	3 cut(s)	32, 131, 583
NlaIV	GGNNCC	1 cut(s)	377
NmuCI	GTSAC	1 cut(s)	174
NspI	RCATGY	2 cut(s)	32, 583
PaeI	GCATGC	1 cut(s)	583
PciI	ACATGT	1 cut(s)	28
PctI	GAATGC	1 cut(s)	67
PdmI	GAANNNNTTC	2 cut(s)	390, 426
PfeI	GAWTC	1 cut(s)	502
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
PscI	ACATGT	1 cut(s)	28
PshBI	ATTAAT	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	377
PspPI	GGNCC	1 cut(s)	376
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
RseI	CAYNNNNRTG	1 cut(s)	584
SaqAI	TTAA	6 cut(s)	102, 248, 350, 405, 456, 530
SatI	GCNGC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	4 cut(s)	122, 281, 391, 525
SfaNI	GCATC	2 cut(s)	205, 613
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	3 cut(s)	271, 280, 338
SmoI	CTYRAG	3 cut(s)	271, 280, 338
SphI	GCATGC	1 cut(s)	583
Sse9I	AATT	2 cut(s)	245, 549
SsiI	CCGC	1 cut(s)	583
SspI	AATATT	1 cut(s)	436
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	56
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	245, 549
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	6 cut(s)	102, 248, 350, 405, 456, 530
Tru9I	TTAA	6 cut(s)	102, 248, 350, 405, 456, 530
TscAI	CASTG	3 cut(s)	90, 564, 614
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	3 cut(s)	318, 383, 602
TspRI	CASTG	3 cut(s)	90, 564, 614
VspI	ATTAAT	1 cut(s)	248
XapI	RAATTY	1 cut(s)	549
XceI	RCATGY	2 cut(s)	32, 583
XmnI	GAANNNNTTC	2 cut(s)	390, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.