Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004626

Physical Location & Seq

Genomic Coordinates Reverse (-)

30150272 .. 30152854

Gene Structure 2583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAGTTGTGTCTTGGTCTGCAGCCAGATGAAGTTGCACCGGCTTTATACAGGGTTTATGCAAAAGATGGCTTGTCTAACTGCTGTCAAATGCATTCCTACTGTTGCTAGTCGGTCTCTTATTCAGAATGTTGAGGTTGTTACAAGTATTTGGATTGCTTTACATGACCCAGAAAAGTCAATTGCAGAAGTTGCAGAGGATTTGTGGGATCGCTATGGACATGACTTTGGGACTGACTATTCAGGCCTTTTCAAAGCACTTTCTCATATCCATTATACTGTCCGTTTTGCTACTGCAGAGGCATTAGCTGCTGCTTTGGACGAAAATCCTGATTCTACACAGGTGCCTGAAAATAGTGTTCTTATAACCCAGGAATCCCTTTCTACTTTATTCTCCCTGTATATCCGTGATGCTGGTTTGACTGGGAACAATGTTGATGCTGGTTGGCTGGGCCGGCAGGGTGTAGCTTTGGCATTGCATTCTTCTCCTGATGTACTGAGAACAAAAGACCTTCCTTTTGTTATGACCTTTTTGATTTCAAGAGCATTGGCAGATCCTAATGCTGATGTTCGGGGGAGACTGATTAATGCTGGCATTATGATTATTGATAAGCACGGAAGAGATAACGTGTCCTTGCTATTTCCCATCTTTGAGAACTACTTGAACAAAAAGGTTATTCTCCCCTTCTATCTTGTGATGGCAGTGAAAGACCACTTAATGGATGTGAAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

244

Amino Acids

27.08

Weight (kDa)

6.04

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64790 AT1G64790 AT1G64790
fragaria_vesca	FvH4_6g01410 FvH4_6g01410
malus_domestica	MD04G1233800.v1.1 MD04G1233900.v1.1 MD04G1234100.v1.1 MD12G1252000.v1.1
prunus_persica	Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1
pyrus_communis	pycom04g20770 pycom04g20790 pycom07g20320 pycom12g23140
rosa_chinensis	RchiOBHm_Chr3g0449041 RchiOBHm_Chr6g0282721
rosa_laevigata	RLG00000025859
rosa_multiflora	Rmu_co8514751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427150 Rroxscaffold_7G00190110
rosa_rugosa	Rorug02G0617500
rosa_samantha	Rh3AG016000 Rh3BG016200 Rh3CG015200 Rh3DG016500
rosa_wichuraiana	Rw3G001200 Rw5G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	343
AccB7I	CCANNNNNTGG	1 cut(s)	718
AclWI	GGATC	2 cut(s)	216, 548
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	1 cut(s)	718
AflIII	ACRYGT	1 cut(s)	627
AgsI	TTSAA	3 cut(s)	253, 540, 664
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	2 cut(s)	308, 467
AluI	AGCT	2 cut(s)	308, 467
Alw26I	GTCTC	2 cut(s)	120, 571
AlwI	GGATC	2 cut(s)	216, 548
AoxI	GGCC	2 cut(s)	244, 451
ApeKI	GCWGC	3 cut(s)	21, 308, 311
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AseI	ATTAAT	1 cut(s)	585
AspS9I	GGNCC	1 cut(s)	451
BanI	GGYRCC	1 cut(s)	343
BbvI	GCAGC	3 cut(s)	33, 295, 298
BccI	CCATC	3 cut(s)	61, 653, 691
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	120, 571
BfaI	CTAG	1 cut(s)	108
BfmI	CTRYAG	2 cut(s)	19, 294
BisI	GCNGC	3 cut(s)	22, 309, 312
BlsI	GCNGC	3 cut(s)	23, 310, 313
Bme1390I	CCNGG	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	2 cut(s)	400, 427
BmuI	ACTGGG	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
Bse118I	RCCGGY	2 cut(s)	39, 453
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseMI	GCAATG	1 cut(s)	473
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	427
BseXI	GCAGC	3 cut(s)	33, 295, 298
BseYI	CCCAGC	1 cut(s)	448
BshFI	GGCC	2 cut(s)	246, 453
BshNI	GGYRCC	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	40, 454
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	718
BsmAI	GTCTC	2 cut(s)	120, 571
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	2 cut(s)	93, 478
BsnI	GGCC	2 cut(s)	246, 453
Bso31I	GGTCTC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	208, 553
BspANI	GGCC	2 cut(s)	246, 453
BspCNI	CTCAG	1 cut(s)	489
BspLI	GGNNCC	1 cut(s)	345
BspMAI	CTGCAG	2 cut(s)	23, 298
BspPI	GGATC	2 cut(s)	216, 548
BspT107I	GGYRCC	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	473
BsrFI	RCCGGY	2 cut(s)	39, 453
BsrI	ACTGG	1 cut(s)	427
BssAI	RCCGGY	2 cut(s)	39, 453
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	2 cut(s)	208, 553
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	2 cut(s)	103, 280
Bst6I	CTCTTC	1 cut(s)	613
BstAPI	GCANNNNNTGC	2 cut(s)	191, 308
BstC8I	GCNNGC	2 cut(s)	455, 592
BstDEI	CTNAG	1 cut(s)	497
BstF5I	GGATG	1 cut(s)	727
BstKTI	GATC	2 cut(s)	211, 556
BstMAI	GTCTC	2 cut(s)	120, 571
BstMBI	GATC	2 cut(s)	208, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 308, 454
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	2 cut(s)	19, 294
BstV1I	GCAGC	3 cut(s)	33, 295, 298
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	2 cut(s)	246, 453
BtsCI	GGATG	1 cut(s)	727
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	1 cut(s)	708
Cac8I	GCNNGC	2 cut(s)	455, 592
Cfr10I	RCCGGY	2 cut(s)	39, 453
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	2 cut(s)	164, 221
CviJI	RGCY	8 cut(s)	24, 43, 71, 246, 308, 448, 453, 467
CviKI_1	RGCY	8 cut(s)	24, 43, 71, 246, 308, 448, 453, 467
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	2 cut(s)	210, 555
DpnII	GATC	2 cut(s)	208, 553
Eam1104I	CTCTTC	1 cut(s)	613
EarI	CTCTTC	1 cut(s)	613
Eco147I	AGGCCT	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	369
EcoT22I	ATGCAT	1 cut(s)	95
FaeI	CATG	2 cut(s)	167, 224
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	2 cut(s)	163, 220
Fnu4HI	GCNGC	3 cut(s)	22, 309, 312
Fsp4HI	GCNGC	3 cut(s)	22, 309, 312
FspBI	CTAG	1 cut(s)	108
GluI	GCNGC	3 cut(s)	22, 309, 312
GsaI	CCCAGC	1 cut(s)	452
HaeIII	GGCC	2 cut(s)	246, 453
HapII	CCGG	2 cut(s)	40, 454
Hin1II	CATG	2 cut(s)	167, 224
HinfI	GANTC	2 cut(s)	332, 374
HpaII	CCGG	2 cut(s)	40, 454
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	4 cut(s)	329, 488, 540, 732
HpyAV	CCTTC	2 cut(s)	521, 694
HpyCH4III	ACNGT	2 cut(s)	103, 280
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	8 cut(s)	21, 37, 61, 93, 185, 194, 296, 478
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 308, 454
HpyF3I	CTNAG	1 cut(s)	497
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	2 cut(s)	167, 224
KroI	GCCGGC	1 cut(s)	453
KroNI	GCCGGC	1 cut(s)	455
Kzo9I	GATC	2 cut(s)	208, 553
Lsp1109I	GCAGC	3 cut(s)	33, 295, 298
LweI	GCATC	2 cut(s)	400, 427
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	210, 555
MboI	GATC	2 cut(s)	208, 553
MboII	GAAGA	2 cut(s)	474, 630
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	1 cut(s)	180
MnlI	CCTC	3 cut(s)	127, 190, 292
Mph1103I	ATGCAT	1 cut(s)	95
MroNI	GCCGGC	1 cut(s)	453
MseI	TTAA	2 cut(s)	585, 716
MspI	CCGG	2 cut(s)	40, 454
MspR9I	CCNGG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	2 cut(s)	93, 478
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	3 cut(s)	191, 308, 454
NaeI	GCCGGC	1 cut(s)	455
NdeII	GATC	2 cut(s)	208, 553
NgoMIV	GCCGGC	1 cut(s)	453
NlaIII	CATG	2 cut(s)	167, 224
NlaIV	GGNNCC	1 cut(s)	345
NsiI	ATGCAT	1 cut(s)	95
PceI	AGGCCT	1 cut(s)	246
PctI	GAATGC	2 cut(s)	93, 478
PdiI	GCCGGC	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	332, 374
PflMI	CCANNNNNTGG	1 cut(s)	718
PkrI	GCNGC	3 cut(s)	23, 310, 313
PshBI	ATTAAT	1 cut(s)	585
PsiI	TTATAA	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	369
PspFI	CCCAGC	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	451
PstI	CTGCAG	2 cut(s)	23, 298
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	585, 716
SatI	GCNGC	3 cut(s)	22, 309, 312
Sau3AI	GATC	2 cut(s)	208, 553
Sau96I	GGNCC	1 cut(s)	451
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	8 cut(s)	138, 310, 345, 469, 513, 530, 630, 675
SfaNI	GCATC	2 cut(s)	400, 427
SfcI	CTRYAG	2 cut(s)	19, 294
Sse9I	AATT	1 cut(s)	180
SseBI	AGGCCT	1 cut(s)	246
SspMI	CTAG	1 cut(s)	108
StuI	AGGCCT	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	103, 280
TaiI	ACGT	1 cut(s)	630
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	180
TatI	WGTACW	1 cut(s)	493
TfiI	GAWTC	2 cut(s)	332, 374
Tru1I	TTAA	2 cut(s)	585, 716
Tru9I	TTAA	2 cut(s)	585, 716
TscAI	CASTG	1 cut(s)	708
TseI	GCWGC	3 cut(s)	21, 308, 311
TspDTI	ATGAA	1 cut(s)	44
TspGWI	ACGGA	3 cut(s)	272, 395, 630
TspRI	CASTG	1 cut(s)	708
Van91I	CCANNNNNTGG	1 cut(s)	718
VspI	ATTAAT	1 cut(s)	585
XspI	CTAG	1 cut(s)	108
Zsp2I	ATGCAT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.