Rroxscaffold_6G00427150

Translational activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0004626
Physical Location & Seq
Forward (+)
47771205 .. 47792878
21674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427150.1

Sequence Viewer

Length: 7782 bp
ATGGCGGCTCCGCCAGAGTCTCTTCTCTCCGTCGCCGTGTCGGTCTCCACCGCCTCCACTCAGAAGCGGGTTCGGATCTTCCGAGATGAAATTCCGGCCATTATCGACGGCTCCGAAATATGTGCGGAGTCTGCAACACTTTTGGTAGATATAATATTTAAAACATTGTACATTTATGAGGATCGTGGGTCCAAGAAAGCTGTCGATGACATTATCACGAAATGTTTTCAAGAAGTTGCCTTCATGAAGAATTTTGCAGCAGCCCTTGTTCAGATGATGGAAAAAAATGTAAGGGTGCAATCACATGTTGGTGGCCACAGACTTTTCCAGTGGTCTTGTCTTCTTCTTAGCAAGAGTAAATTCGCCACAGTTTCCAAGAATGCATTCTGTAGAGTTGCCACAGTGCAGGCATCATTACTTCATATTGTTGTACAAACATCTCTCAGTGAGCAACGGGCTTGCAAGAAGACATTTTATCACTTACTTTCTCAGTCGCCGGACATCTACAATTTGTATATAGAGGAGTTGAAGGAAGCACGCATCCCATACAAAGATAGTCCTGAATTATTATGGTTCTTGATGGAATTCTCAAGTACCTCAAGAAAATCATCTTCTTTGTTTGAACAATGCAAGCCAATATTTCTTGATATATATCTCAAGGCAATTTTAAACGCAAAAGAAAAGCCAGCAAAGGGTCTTAGCGAAGCTTTTCGTCCACTTTTTCGGCATATGTTGCATGAAGATTTTCAAAATGTTGTGCTTCCATCTTCTGTTAAAATGCTGAAACGCAACCCTGAGATTGTATTGGAATCAGTTGGCATTCTCTTGAAGTCTGTCAACCTTGATTTGAGCAAGTATGCTGTCGAAATCCTTTCACTGGTCTTGCCACAGGCTCGGCATGCAGATGAAGGCCGGAGGGTTGGTGCACTGGAAATTGTACGATGTCTGAGCCAAAATTCTAGTAATCCAGATGCTATAGAAGCAATGTTCAATGCTGTCAAATCTGTCCTTGGAGGCTCAGAGGGAAGACTTACATTTCCTTACCAGAGAATTGGCATGATCAATGCACTGCAAGAATTGTGTAATGCTCCAGATGGGAAGCACCTTAATAGACTGTCACAGACCTCATGCAATTACCTTCGATCTTGTTACAAGGAGGATGGCAATGAGGAGGTCAAGCTTGCAATTTTGTCAGCTCTAGGTTCGTGGGCAGCAAGATCTGCTGATGTTGTTCAGTCAGATTTAGTTTCTTTTTTGTCTTCTGGGCTTAAGGAGAAAGAAGCTCTAAGAAGAGGGCATCTTCGTTGTCTACGAGCCATATGCAGAAATACAGATGCTGTTTATCGGTTATCATCATTACTAGAACCTCTCATTCAAGTTGTCAAAACTGGTTTTACTAAAGGAGTTCAGCGTTTGGATGGTATATATGCCTTGCTATTAGTTGGCAAAATTGCAGCAGTTGACATCAAAGCAGAGGAGACCGTGATGAAGGAAAAGATCTGGTCTGTGATATCTCAAAATGAGCCATCACTTCTTCCAATATCCTTGGCTTCAAAATTGTTGACTGAGGACTGCATGGCATGTGTTGATCTTCTTGAAGTCATGCTGGTGGAACATTTGCAGAGGGCGTTGGATTCCTTTTCTGTCAGATCACTGTCACAGTTGATAATATTTTTCATGTGCCACCCATGTTGGGATATTCGAAGAGTGGCTTATAATGCTACCAAAAAGATAGTTGCTGCTGCCCCACAATTAGCTGAACATCTTTTGATTGAATTCACGACTTTCATGTCTGTAGTTGAAGAGAAACATCGTATTTCAAAGTCAAGTGATACAGATAGTTCATTGGACTCCCAAGCACCATTCCTTCCCTCGATAGAGGTTTCAGTAAAGGCTTTACTTGTTATATCATCAGCAGTTCTACCTGCAGCTCCAAGTGCATCAATGCGAGTTTTATTATGCGGACATCATCCATACTTAGTTGGAACTGCAAAAAGAGATGCAGTTTGGAGGGGCCTACTGGAAACAATGTGGTTGTCCAGTACTACTCAATCAGAGCAGCAAGCAGCAATATCCTCATTAGCCACTCTGATGTCCATTGCACCTGGAGAAACGTATGTGGAGTTTGAAAAGCACTTGAAACACCTTCCTTACCGATATTCACATGATACGCTTTCCGAAAATGATATTCGGATTTTTCATACTCCTGAAGGCTTGCTTTCAAGTGAGCAAGGCGTCTACATAGCTGAGTCTGTTGCTGCCAAGAACATGAAACAAGCTAAGGGCCGTTTTCGGATGTATGAGGACCTAAATGACATGGATACTGGTGGTTCTAATCATTCTGCAAAAGTCGAGCCAAGCAGTAAAACTGGGAAGTCGACAAAGAAACCTGAGAAAACAAAGACTGCAAAAGAGGAGGCACGTGGGTTACAACTTAAGGAGGAGGCATCCATACGTGAGAAGGTCCGAGAAATACAGAAAAACCTGTCTTTAATGCTTAAAGCTCTTGGGGAAATGGCCATTGCAAATCCTGTTTTTGCACATAGTCGACTTCCTTCCCTGGTTAACTATGTCAATCCATTACTAAGGTCACCAATAGTCAGCGATATTGCATATGAAACTATGGTGAAACTCTCTAGATGTACTGCTCCCCCTCTTTGTAATTGGGGCCTTGACATTGCTACTGCTTTGCGCTTAGTTGTGACTGAAGAAGATCGTCTTCTGTTGGATATGATTTCATCGGTTGGGCAAGGGGAAGCCGATGATAGACCATCTTTGAGTCTATTTGAGCGAATTATTAACGCCATTTCTGCATCTTGTAAATCGGGACCTCTTCCTGTTGATTCTTTCACTTTTGTCTTCCCTATAATGGAGCGAATTCTTTTAAGCTCTAAGAAGACCGGGCTTCATGATAATGTGCTTCAGATTATTTACTTGCACATGGACCCCCTATTACCCCTCCCTAGGCTTCGAATGATTTCAGTTCTTTATCATGTTCTTGGTATTGTACAAGCTTATCAATCCTCTATTGGACCTGCGTTGAATGAGTTGTGTCTTGGTCTGCAGCCAGATGAAGTTGCACCGGCTTTATACGGGGTTTATGCAAAAGATGTTCATGTTAGAATGGCTTGTCTAACTGCTGTCAAATGCATTCCTACTGTTGCTAGTCGGTCTCTTATTCAGAATGTTGAGGTTGCTACAAGTATTTGGATTGCTTTACATGACCCAGAAAAGTCAGTTGCAGAAGCTGCAGAGGATTTGTGGGATCGCTATGGACATGACTTTGGGACTGACTATTCAGGCCTTTTCAAAGCACTTTCTCATATCCATTATACTGTCCGTTTTGCTGCTGCAGAGGCATTAGCTGCTGCTTTGGACGAAAATCCTGATTCTATACAGGAATCCCTTTCTACTTTATTCTCCCTGTATATCCGTGATGCTGGTTTGACTGAGAACAATGTCGATGCTGGTTGGCTGGGCCGGCAGGGTGTGGCTTTGGCATTGCATTCTTCTGCTGATGTACTGAGAACAAAAGACCTTCCTGTTGTTATGACCTTTTTGATTTCAAGAGCATTGGCAGATCCTAATGCTGATGCATCGGATGAGGAGACATATGATTTGGTTCGTGAGGGTGTTGTTATTTTCACTGGAGCGTTGGCAAAGCATTTGGCAAAGGATGATCCAAAAGTACATGCTGTTATAGAGAAGTTGTTGGATGTGTTGAACACTCCATCAGAAGCTGTTCAGCGGGCGGTTTCAACATGCCTATCACCATTAATGCAATCAAAGCAAGATGATGGCCAAGCTCTTGTTTCAAGGATTTTGGATCAATTGATGAACAGTGATAAGTATGGGGAACGCCGTGGAGCTGCTTTTGGGCTTGCTGGAGTAGTCAAGGGATTTGGTATTTCTTCCTTGAAGAAGTATGGAATTGTGAATATACTACAGGAAGGACTTGTTGATAGAATTAATCTTCTGACTACTGTTGAGAGTTTTGTGCTCTTTGCGGAGGGGATCAGCCTAAGGTTGTGCAAAGGTGCAAATGTTTGGGTGGATTGGAATTCTGCAAAACGTCGTGAAGGGGGTTTGCTTGGATTTGAGTGTCTATGTGAAACACTTGGAAAATTATTTGAACCGTATGTAATACAAATGTTGCCACTACTGTTGGTTTCATTTTCTGATCAAGTTGTTGCAGTTCGTGAAGGTGCTGAGTGTGCTGCTCGGGCAATGATGTCTCACCTTACTGCTCAGGGAGTGAAACTGGTCCTTCCATCTCTTTTGAAGGGTCTTGAAGATAAAGCTTGGCGAACAAAGCAAAGTAGTGTTCAACTGCTTGGTGCTATGGCCTATTGTGCTCCTAAGCAGCTGTCTCAATGTCTCCCTAAGATTGTACCGAAACTGACTGAGGTTTTAACAGACACCCACCCTAAAGTTCAGTCAGCAGGACAGGAAAACAGCACTTCAACAGGTGTTGGGAGCGTAATAAAGAATCCTGAGATAGCTTCATTGGTCCCTACTCTTCTTCTGGGTCTTACAGATCCAAATGACTATACAAAATATTCTCTGGATGTTCTCTTGGGAACAACATTCATCAATTCAATTGATGCTCCTTCACTTGCACTCTTGGTGCCGATAGTACATAGAGGGCTAAGGGAGAGGGGTGCAGAGACTAAAAAGAAAGCAGCCCAAATAGTTGGCAATATGTGTTCGTTAGTTACAGATCCAAATGATATGATTCCGTACATAGGGCTGCTTCTTCCTGAAGTGAAAAAGGTTCTTGTGGATCCAATTCCAGAAGTTAGGTCAGTTGCTGCAAGGGCGCTTGGATCCCTCATAAGGGGACTGGGCGAAGATCATTTCCCAGATCTTGTTCCCTGGTTGTTGGATACACTTAAATCAGATAATAGTAATGTTGAGCGATCTGGAGCTGCTCAAGGGTTAAGTGAGGTATTAGCTGCACTTGGGACTGAGTACTTTGAGCATGTACTTCCTGATGTTATCCGAAATTGTTCTCATCAAAAAGCATCTGTGCGTGATGGGCATTTGACATTATTCAAGTATTTACCAAGGTCCTTAGGCGTCCAATTCCAGAATTATTTACAGCAGGTGCTGCCTGCTATTATAGATGGTCTTGCTGATGAAAATGAGTCTGTACGTGAAGCAGCATTAGGTGCGGGACATGTTCTGGTTGAGCATTATGCTATAACGTCGTTACCTTTGCTCCTACCCGCTGTTGAGGATGGTATCTTTAATGATAGTTGGCGAATTCGACAAAGCTCTGTGGAATTATTGGGGGATCTCTTATTTAAGGTCGCGGGTACTTCTGGAAAAGCTTTACTGGAGGGTGGCAGTGATGATGAAGGTGCAAGTACTGAAGCACAGGGGCGGGCTATCATTGAGGTTCTTGGAAGGGATAAGCGTGATGAAATTCTCGCTGCATTATATATGGTTCGAACTGATGTCAGCCTATCAGTGCGTCAGGCTGCGTTGCATGTATGGAAAACTATAGTGGCAAATACCCCAAAAACTCTAAAGGAAATAATGCCAGTTCTAATGAATACTCTAATTACCTCTCTTGCATCATCATCCTTTGAAAGGCGGCAGGTCGCTGCACGTGCACTGGGTGAGCTTGTCAAGAAGCTTGGTGAAAGAGTGCTGCCATTGATCATCCCAATTTTATCCCAGGGATTGAAGGACTCTGACACCAGTAGACGACAAGGTGTATGCATTGGTCTGAGTGAAGTAATGGCATGTGCAGCTAAAAGTCATTTGTTGAGTTTCATGGATGAGCTGATTCCAACCATTCGAACTGCTCTTTCAGATAGCATGCCCGAAGTTCGTGAGTCTGCTGGAATAGCATTCAGCACTCTGTACAAGAATGCTGGAATGCAAGCGATTGATGAAATTGTTCCCAGTCTTTTGCATGCTTTGGAGGACGATCAAACTTCTGATACTGCACTTGATGGTCTCAAACAAATCTTAAGTGTCAGGATTACTGCGGTTTTACCCCACATTTTGCCCAAGCTTGTCCAGCTTCCACTAACTGCATTTAATGCACATGCTCTTGGAGCTGTAGCTGAGGTTGCTGGGCCTGGTCTTAACACTCATCTTGGTACCGTTCTTCCTGCTTTACTTACTTCAATGGGTGTTGATGCAAAGGATGTTCAAACATTGGCAAAGGAGGCTGCTGAAACTGTGGTCTTAGTTATAGATGAGGAAGGTGTTGAATATCTTACATCTGAGCTACTTAGAGCTGTCAGCGATAGTCAGGCTTCAATTAGAAGAAGTGCCGCGTATCTTATAGGCTATTTCTTCAAAAACAGTAAATTATATTTGGTTGATGAAGCTCCAAACATGATATCTACCTTGATTGTCTTGCTCAGTGATTCTGATTCAGCTACTGTGGCGGTATCTTGGGAAGCATTGTCAAGGGTTGTAAGTTCAGTCCCCAAGGAGGTACTTCCTTCATATATTAAATTAGTACGAGATGCTGTGTCGACTTCCAGAGATAAGGAGCGTAGGAAAAAGAAGGGAGGACCTATTGTCATACCTGGATTTTGTTTACCAAAAGCACTTCAACCGTTGCTTCCAATATTTCTCCAGGGTTTAATAAGTGGATCTGCTGAACTGAGAGAGCAAGCAGCACTGGGTCTTGGAGAACTGATTGAAGTGACTAGTGAAAAGGCACTCAAAGAGTTTGTCATTCCAATTACAGGGCCTCTTATCCGGATAATAGGTGACCGGTTCCCTTGGCAGGTGAAGAGTGCTATTTTATCTACCTTGACAATCATAATCAGAAAAGGTGGGATGGCCTTGAAACCATTTCTTCCGCAGCTTCAAACAACATTTGTCAAGTGTCTACAGGATAACACAAGAATTGTTCGCTCAAGTGCTGCCCTTGCTCTCGGAAAGCTTAGTGCTTTAAGTACCCGGGTGGACCCTCTAGTTGGAGACCTCCTGTCCAGTCTGCAGGCTTTGGATAGTGGGGTTCGGGAGGCAAGTTTGTCTGCTTTAGAAGGTGTCCTAAAGTATGCTGGAAAGAGCGTGAGCAGTGCTGTTAGAACTCGTGTCTACTTGCAGCTTAAGGATTTGATTCATCATGATGATGATGAGGTTCGAGTATCTGCTGCAAGCATTTTGGGTATCATGTCCCAGTACATTGAAGATACCCAGCTGACCGAGCTGCTTCAGGAACTATCAAGTTTTCCATCGTCCCTCAGCTGGACTGCTAGGCATGGTTCTGTACTTGCAATTTCATCCATGCTCAGGCACATCCCATCCACCATCTGTACTTCTCCTGTGTTTCCGTCTATCCTGGACCAGCTTAAAGCTGCCTTGACTGATGAGAAGTTCCCTCTTCGTGAAACTTCAACCAAGGCATTTGGGAGACTTCTTGTTTATAAAGTCCGAAGTGATCCTTCTAATACCTCAGTACAATTAGATATTATATCGTCTTTAGTCTCAGCATTGCATGATGATTCTAGCGAAGTTAGAAGAAAGGCGTTATCTGCTCTAAAGGCAGTTTCGAAGGAAAGTTCTTCACCTATTGCGGCCCATATCAATATTATTGGACCTGCACTGGCGGAATGTTTGAAGGATGGAAGTACACCCGTGAGACTTGCCGCAGAAAGATGTGCTCTGCATGCCTTCCAATTGACAAAGGGTCCTGAAAATGTTCAAGCTGCACAAAAGTTCATCACAGGCTTGGAAGCTAGACGAATATCAAAGTTTTCAGAACATAGTGATGATAGTGAAGGTGAGGATGACTTGGCAAGTGGCTGA

Protein Analysis

2593

Amino Acids

283.18

Weight (kDa)

6.34

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GNC1_N PF24993 211 - 344 2.3e-45 Stalled ribosome sensor GCN1 N-terminal
HEAT_EF3_N PF24987 1354 - 1483 2.1e-37 EF3 N-terminal HEAT repeat
HEAT_GCN1 PF23271 1368 - 1482 7.3e-07 Stalled ribosome sensor GCN1-like, HEAT repeats
HEAT_EF3_GNC1 PF24984 1525 - 1611 5.8e-26 Elongation factor 3/GNC1 HEAT repeat
HEAT_GCN1 PF23271 1599 - 1746 5.7e-11 Stalled ribosome sensor GCN1-like, HEAT repeats
HEAT_EF3_N PF24987 1640 - 1769 2.7e-08 EF3 N-terminal HEAT repeat
TPR_DNAAF5 PF25757 1808 - 1964 1.4e-06 Dynein axonemal assembly factor 5-like, TPR repeats
HEAT_GCN1 PF23271 1842 - 1987 2e-06 Stalled ribosome sensor GCN1-like, HEAT repeats
HEAT_EF3_N PF24987 1857 - 1950 3.1e-07 EF3 N-terminal HEAT repeat
HEAT_EF3_GNC1 PF24984 1878 - 1957 2.9e-06 Elongation factor 3/GNC1 HEAT repeat
HEAT_GCN1 PF23271 2001 - 2190 3.9e-52 Stalled ribosome sensor GCN1-like, HEAT repeats
HEAT_MROH2B_C PF23227 2284 - 2398 9.7e-07 MROH2B-like, HEAT repeats
HEAT_GCN1_C_2 PF25801 2313 - 2564 4.9e-32 Stalled ribosome sensor GCN1-like, HEAT repeats
HEAT_GCN1_C PF25786 2411 - 2565 5.4e-74 GCN1-like, C-terminal HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1716, 7401
AarI CACCTGC 2 cut(s) 5095, 6745
AasI GACNNNNNNGTC 1 cut(s) 1789
Acc36I ACCTGC 6 cut(s) 1933, 3043, 5095, 5593, 6745, 7582
Acc65I GGTACC 1 cut(s) 6113
AccB1I GGYRCC 2 cut(s) 4627, 6113
AccI GTMKAC 8 cut(s) 1309, 2238, 2378, 2548, 5710, 6497, 6859, 7071
AccII CGCG 2 cut(s) 5315, 6293
AccIII TCCGGA 1 cut(s) 6726
AcoI YGGCCR 4 cut(s) 96, 313, 2517, 3799
AcuI CTGAAG 6 cut(s) 2229, 2727, 2906, 4782, 5394, 7172
AcvI CACGTG 2 cut(s) 2423, 5615
AcyI GRCGYC 2 cut(s) 2235, 5079
AdeI CACNNNGTG 1 cut(s) 5624
AflII CTTAAG 4 cut(s) 1268, 2435, 5980, 7082
AflIII ACRYGT 2 cut(s) 304, 5179
AgeI ACCGGT 1 cut(s) 6741
AhdI GACNNNNNGTC 3 cut(s) 6542, 6958, 7662
AhlI ACTAGT 1 cut(s) 6674
AjnI CCWGG 8 cut(s) 2104, 2559, 4874, 5682, 6091, 6550, 6600, 7314
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
Alw21I GWGCWC 5 cut(s) 928, 4002, 4357, 5620, 7639
Alw44I GTGCAC 2 cut(s) 924, 5616
AlwNI CAGNNNCTG 6 cut(s) 1337, 3248, 3740, 4811, 5110, 6401
Ama87I CYCGRG 2 cut(s) 4221, 6930
Aor13HI TCCGGA 1 cut(s) 6726
ApaLI GTGCAC 2 cut(s) 924, 5616
ArsI GACNNNNNNTTYG 4 cut(s) 3601, 3633, 6684, 6716
AseI ATTAAT 2 cut(s) 3776, 3969
AsiGI ACCGGT 1 cut(s) 6741
Asp700I GAANNNNTTC 8 cut(s) 383, 708, 744, 2977, 3741, 5008, 5907, 7674
Asp718I GGTACC 1 cut(s) 6113
AspA2I CCTAGG 1 cut(s) 2963
AspLEI GCGC 2 cut(s) 2694, 4822
AsuC2I CCSGG 3 cut(s) 2902, 6931, 6932
AsuII TTCGAA 5 cut(s) 1702, 2971, 5452, 5806, 7526
AvaI CYCGRG 2 cut(s) 4221, 6930
AvrII CCTAGG 1 cut(s) 2963
AxyI CCTNAGG 2 cut(s) 4022, 5074
BaeGI GKGCMC 2 cut(s) 928, 5620
BalI TGGCCA 3 cut(s) 315, 2519, 3801
BamHI GGATCC 2 cut(s) 4783, 4826
BanI GGYRCC 2 cut(s) 4627, 6113
BauI CACGAG 1 cut(s) 7065
BbrPI CACGTG 2 cut(s) 2423, 5615
BbsI GAAGAC 7 cut(s) 332, 473, 1033, 1251, 2711, 2851, 2903
Bbv12I GWGCWC 5 cut(s) 928, 4002, 4357, 5620, 7639
BbvCI CCTCAGC 2 cut(s) 6078, 7217
BceAI ACGGC 4 cut(s) 20, 124, 2271, 3846
BcgI CGANNNNNNTGC 4 cut(s) 104, 138, 1302, 1336
BciT130I CCWGG 8 cut(s) 2106, 2561, 4876, 5684, 6093, 6552, 6602, 7316
BciVI GTATCC 2 cut(s) 2314, 4879
BclI TGATCA 3 cut(s) 1059, 4180, 5664
BcnI CCSGG 3 cut(s) 2902, 6931, 6932
BcuI ACTAGT 1 cut(s) 6674
BfoI RGCGCY 1 cut(s) 4823
BfrI CTTAAG 4 cut(s) 1268, 2435, 5980, 7082
BfuAI ACCTGC 6 cut(s) 1933, 3043, 5095, 5593, 6745, 7582
BfuI GTATCC 2 cut(s) 2314, 4879
BglII AGATCT 3 cut(s) 1217, 1497, 4864
BlnI CCTAGG 1 cut(s) 2963
BmcAI AGTACT 3 cut(s) 2044, 4973, 5371
BmeRI GACNNNNNGTC 3 cut(s) 6542, 6958, 7662
BmeT110I CYCGRG 2 cut(s) 4221, 6930
BmrI ACTGGG 6 cut(s) 2379, 4853, 5630, 5907, 6656, 7147
BmuI ACTGGG 6 cut(s) 2379, 4853, 5630, 5907, 6656, 7147
BpiI GAAGAC 7 cut(s) 332, 473, 1033, 1251, 2711, 2851, 2903
BpmI CTGGAG 7 cut(s) 1074, 2127, 3669, 3906, 4944, 5360, 6584
Bpu10I CCTNAGC 7 cut(s) 2280, 4248, 4359, 4649, 6078, 7217, 7265
Bpu14I TTCGAA 5 cut(s) 1702, 2971, 5452, 5806, 7526
BpuEI CTTGAG 5 cut(s) 574, 583, 641, 4917, 6871
BpuMI CCSGG 3 cut(s) 2902, 6931, 6932
BsaAI YACGTR 4 cut(s) 2423, 2456, 5156, 5615
BsaBI GATNNNNATC 1 cut(s) 651
BsaHI GRCGYC 2 cut(s) 2235, 5079
BsaI GGTCTC 5 cut(s) 49, 1472, 3177, 5972, 6945
BsaWI WCCGGW 2 cut(s) 6726, 6741
BsaXI ACNNNNNCTCC 4 cut(s) 907, 937, 5205, 5235
Bse118I RCCGGY 3 cut(s) 3082, 3480, 6741
Bse21I CCTNAGG 2 cut(s) 4022, 5074
Bse3DI GCAATG 8 cut(s) 990, 1171, 2097, 2520, 2676, 3500, 4233, 7466
Bse8I GATNNNNATC 1 cut(s) 651
BseAI TCCGGA 1 cut(s) 6726
BseBI CCWGG 8 cut(s) 2106, 2561, 4876, 5684, 6093, 6552, 6602, 7316
BseJI GATNNNNATC 1 cut(s) 651
BseMI GCAATG 8 cut(s) 990, 1171, 2097, 2520, 2676, 3500, 4233, 7466
BseRI GAGGAG 6 cut(s) 536, 1184, 1490, 2429, 2456, 3620
BseSI GKGCMC 2 cut(s) 928, 5620
BseYI CCCAGC 3 cut(s) 3475, 6086, 7170
BsgI GTGCAG 8 cut(s) 425, 4683, 4941, 5595, 5775, 5940, 7560, 7668
Bsh1236I CGCG 2 cut(s) 5315, 6293
BshNI GGYRCC 2 cut(s) 4627, 6113
BshTI ACCGGT 1 cut(s) 6741
BsiHKAI GWGCWC 5 cut(s) 928, 4002, 4357, 5620, 7639
BsiHKCI CYCGRG 2 cut(s) 4221, 6930
BsiSI CCGG 9 cut(s) 95, 497, 913, 2901, 3083, 3481, 6727, 6742, 6931
BslFI GGGAC 9 cut(s) 2841, 3301, 4496, 4854, 4978, 5190, 6431, 7135, 7198
BsmFI GGGAC 9 cut(s) 2841, 3301, 4496, 4854, 4978, 5190, 6431, 7135, 7198
BsmI GAATGC 8 cut(s) 383, 385, 819, 3150, 3505, 5858, 5884, 5892
Bso31I GGTCTC 5 cut(s) 49, 1472, 3177, 5972, 6945
BsoBI CYCGRG 2 cut(s) 4221, 6930
Bsp119I TTCGAA 5 cut(s) 1702, 2971, 5452, 5806, 7526
Bsp1286I GDGCHC 5 cut(s) 928, 4002, 4357, 5620, 7639
Bsp13I TCCGGA 1 cut(s) 6726
Bsp1407I TGTACA 4 cut(s) 168, 430, 3007, 5871
BspEI TCCGGA 1 cut(s) 6726
BspFNI CGCG 2 cut(s) 5315, 6293
BspHI TCATGA 3 cut(s) 243, 2908, 7099
BspMAI CTGCAG 5 cut(s) 1930, 3066, 3253, 3355, 6972
BspMI ACCTGC 6 cut(s) 1933, 3043, 5095, 5593, 6745, 7582
BspT104I TTCGAA 5 cut(s) 1702, 2971, 5452, 5806, 7526
BspT107I GGYRCC 2 cut(s) 4627, 6113
BspTI CTTAAG 4 cut(s) 1268, 2435, 5980, 7082
BspTNI GGTCTC 5 cut(s) 49, 1472, 3177, 5972, 6945
BsrDI GCAATG 8 cut(s) 990, 1171, 2097, 2520, 2676, 3500, 4233, 7466
BsrFI RCCGGY 3 cut(s) 3082, 3480, 6741
BsrGI TGTACA 4 cut(s) 168, 430, 3007, 5871
BssAI RCCGGY 3 cut(s) 3082, 3480, 6741
BssNI GRCGYC 2 cut(s) 2235, 5079
BssSI CACGAG 1 cut(s) 7065
BssT1I CCWWGG 7 cut(s) 1009, 1545, 2963, 5066, 6450, 6749, 7374
Bst2BI CACGAG 1 cut(s) 7065
Bst2UI CCWGG 8 cut(s) 2106, 2561, 4876, 5684, 6093, 6552, 6602, 7316
Bst6I CTCTTC 8 cut(s) 27, 1285, 1699, 1797, 2838, 4524, 6755, 7362
BstACI GRCGYC 2 cut(s) 2235, 5079
BstAFI CTTAAG 4 cut(s) 1268, 2435, 5980, 7082
BstAPI GCANNNNNTGC 7 cut(s) 733, 1220, 3248, 3365, 5110, 5171, 6053
BstAUI TGTACA 4 cut(s) 168, 430, 3007, 5871
BstBAI YACGTR 4 cut(s) 2423, 2456, 5156, 5615
BstBI TTCGAA 5 cut(s) 1702, 2971, 5452, 5806, 7526
BstDSI CCRYGG 1 cut(s) 3862
BstEII GGTNACC 2 cut(s) 2589, 6737
BstENI CCTNNNNNAGG 1 cut(s) 5593
BstFNI CGCG 2 cut(s) 5315, 6293
BstH2I RGCGCY 1 cut(s) 4823
BstHHI GCGC 2 cut(s) 2694, 4822
BstNI CCWGG 8 cut(s) 2106, 2561, 4876, 5684, 6093, 6552, 6602, 7316
BstPI GGTNACC 2 cut(s) 2589, 6737
BstSLI GKGCMC 2 cut(s) 928, 5620
BstUI CGCG 2 cut(s) 5315, 6293
BstV2I GAAGAC 7 cut(s) 332, 473, 1033, 1251, 2711, 2851, 2903
BstXI CCANNNNNNTGG 2 cut(s) 1052, 4694
Bsu36I CCTNAGG 2 cut(s) 4022, 5074
BsuI GTATCC 2 cut(s) 2314, 4879
BtgI CCRYGG 1 cut(s) 3862
BtsI GCAGTG 3 cut(s) 1067, 5356, 7057
BveI ACCTGC 6 cut(s) 1933, 3043, 5095, 5593, 6745, 7582
CaiI CAGNNNCTG 6 cut(s) 1337, 3248, 3740, 4811, 5110, 6401
CciI TCATGA 3 cut(s) 243, 2908, 7099
CfoI GCGC 2 cut(s) 2694, 4822
Cfr10I RCCGGY 3 cut(s) 3082, 3480, 6741
Cfr9I CCCGGG 1 cut(s) 6930
CseI GACGC 3 cut(s) 2224, 5068, 5465
CspAI ACCGGT 1 cut(s) 6741
CspCI CAANNNNNGTGG 4 cut(s) 1673, 1708, 4146, 4181
DraI TTTAAA 2 cut(s) 160, 669
DraIII CACNNNGTG 1 cut(s) 5624
DrdI GACNNNNNNGTC 1 cut(s) 1789
DriI GACNNNNNGTC 3 cut(s) 6542, 6958, 7662
DseDI GACNNNNNNGTC 1 cut(s) 1789
EaeI YGGCCR 4 cut(s) 96, 313, 2517, 3799
Eam1104I CTCTTC 8 cut(s) 27, 1285, 1699, 1797, 2838, 4524, 6755, 7362
Eam1105I GACNNNNNGTC 3 cut(s) 6542, 6958, 7662
EarI CTCTTC 8 cut(s) 27, 1285, 1699, 1797, 2838, 4524, 6755, 7362
EciI GGCGGA 1 cut(s) 7598
Eco130I CCWWGG 7 cut(s) 1009, 1545, 2963, 5066, 6450, 6749, 7374
Eco147I AGGCCT 1 cut(s) 3303
Eco31I GGTCTC 5 cut(s) 49, 1472, 3177, 5972, 6945
Eco32I GATATC 2 cut(s) 1512, 6360
Eco57I CTGAAG 6 cut(s) 2229, 2727, 2906, 4782, 5394, 7172
Eco72I CACGTG 2 cut(s) 2423, 5615
Eco81I CCTNAGG 2 cut(s) 4022, 5074
Eco88I CYCGRG 2 cut(s) 4221, 6930
Eco91I GGTNACC 2 cut(s) 2589, 6737
EcoNI CCTNNNNNAGG 1 cut(s) 5593
EcoO109I RGGNCCY 8 cut(s) 2014, 2305, 2668, 2828, 5070, 6536, 6716, 7664
EcoO65I GGTNACC 2 cut(s) 2589, 6737
EcoRI GAATTC 5 cut(s) 584, 1775, 2877, 4060, 5265
EcoRII CCWGG 8 cut(s) 2104, 2559, 4874, 5682, 6091, 6550, 6600, 7314
EcoRV GATATC 2 cut(s) 1512, 6360
EcoT14I CCWWGG 7 cut(s) 1009, 1545, 2963, 5066, 6450, 6749, 7374
EcoT22I ATGCAT 4 cut(s) 385, 3152, 3598, 5729
ErhI CCWWGG 7 cut(s) 1009, 1545, 2963, 5066, 6450, 6749, 7374
FalI AAGNNNNNCTT 8 cut(s) 1696, 1728, 2202, 2234, 2703, 2735, 7402, 7434
FaqI GGGAC 9 cut(s) 2841, 3301, 4496, 4854, 4978, 5190, 6431, 7135, 7198
FauI CCCGC 6 cut(s) 60, 3741, 5167, 5236, 5308, 5379
FauNDI CATATG 4 cut(s) 729, 1319, 2614, 3613
FbaI TGATCA 3 cut(s) 1059, 4180, 5664
FblI GTMKAC 8 cut(s) 1309, 2238, 2378, 2548, 5710, 6497, 6859, 7071
GlaI GCGC 2 cut(s) 2693, 4821
GsaI CCCAGC 3 cut(s) 3479, 6090, 7174
GsuI CTGGAG 7 cut(s) 1074, 2127, 3669, 3906, 4944, 5360, 6584
HaeII RGCGCY 1 cut(s) 4823
HapII CCGG 9 cut(s) 95, 497, 913, 2901, 3083, 3481, 6727, 6742, 6931
HgaI GACGC 3 cut(s) 2224, 5068, 5465
HhaI GCGC 2 cut(s) 2694, 4822
Hin1I GRCGYC 2 cut(s) 2235, 5079
Hin6I GCGC 2 cut(s) 2692, 4820
HinP1I GCGC 2 cut(s) 2692, 4820
HincII GTYRAC 7 cut(s) 838, 1462, 1563, 2379, 2549, 2566, 6498
HindII GTYRAC 7 cut(s) 838, 1462, 1563, 2379, 2549, 2566, 6498
HindIII AAGCTT 8 cut(s) 705, 1178, 3012, 4299, 5331, 5639, 6023, 6911
HpaI GTTAAC 1 cut(s) 2566
HpaII CCGG 9 cut(s) 95, 497, 913, 2901, 3083, 3481, 6727, 6742, 6931
Hpy99I CGWCG 4 cut(s) 35, 110, 4077, 5212
HpyCH4IV ACGT 7 cut(s) 2114, 2422, 2455, 4072, 5155, 5207, 5614
HpySE526I ACGT 7 cut(s) 2114, 2422, 2455, 4072, 5155, 5207, 5614
Hsp92I GRCGYC 2 cut(s) 2235, 5079
HspAI GCGC 2 cut(s) 2692, 4820
Kpn2I TCCGGA 1 cut(s) 6726
KpnI GGTACC 1 cut(s) 6117
KroI GCCGGC 1 cut(s) 3480
KroNI GCCGGC 1 cut(s) 3482
Ksp22I TGATCA 3 cut(s) 1059, 4180, 5664
KspAI GTTAAC 1 cut(s) 2566
MaeII ACGT 7 cut(s) 2114, 2422, 2455, 4072, 5155, 5207, 5614
MfeI CAATTG 3 cut(s) 3830, 4599, 7652
MhlI GDGCHC 5 cut(s) 928, 4002, 4357, 5620, 7639
MlsI TGGCCA 3 cut(s) 315, 2519, 3801
MluNI TGGCCA 3 cut(s) 315, 2519, 3801
MlyI GAGTC 8 cut(s) 26, 137, 1844, 2258, 2788, 5156, 5690, 5852
MmeI TCCRAC 7 cut(s) 1611, 1963, 2706, 3693, 4863, 5822, 6928
Mox20I TGGCCA 3 cut(s) 315, 2519, 3801
Mph1103I ATGCAT 4 cut(s) 385, 3152, 3598, 5729
MroI TCCGGA 1 cut(s) 6726
MroNI GCCGGC 1 cut(s) 3480
MroXI GAANNNNTTC 8 cut(s) 383, 708, 744, 2977, 3741, 5008, 5907, 7674
MscI TGGCCA 3 cut(s) 315, 2519, 3801
MslI CAYNNNNRTG 8 cut(s) 309, 903, 1607, 2090, 2913, 7101, 7104, 7743
Msp20I TGGCCA 3 cut(s) 315, 2519, 3801
MspA1I CMGCKG 5 cut(s) 3748, 4366, 5231, 7174, 7221
MspCI CTTAAG 4 cut(s) 1268, 2435, 5980, 7082
MspI CCGG 9 cut(s) 95, 497, 913, 2901, 3083, 3481, 6727, 6742, 6931
MunI CAATTG 3 cut(s) 3830, 4599, 7652
Mva1269I GAATGC 8 cut(s) 383, 385, 819, 3150, 3505, 5858, 5884, 5892
MvaI CCWGG 8 cut(s) 2106, 2561, 4876, 5684, 6093, 6552, 6602, 7316
MvnI CGCG 2 cut(s) 5315, 6293
NaeI GCCGGC 1 cut(s) 3482
NciI CCSGG 3 cut(s) 2902, 6931, 6932
NdeI CATATG 4 cut(s) 729, 1319, 2614, 3613
NgoMIV GCCGGC 1 cut(s) 3480
NmeAIII GCCGAG 1 cut(s) 874
NmuCI GTSAC 6 cut(s) 1116, 1656, 2589, 2701, 6670, 6737
NsiI ATGCAT 4 cut(s) 385, 3152, 3598, 5729
NspV TTCGAA 5 cut(s) 1702, 2971, 5452, 5806, 7526
PaeI GCATGC 4 cut(s) 902, 5830, 5927, 7646
PagI TCATGA 3 cut(s) 243, 2908, 7099
PaqCI CACCTGC 2 cut(s) 5095, 6745
PasI CCCWGGG 1 cut(s) 5683
PceI AGGCCT 1 cut(s) 3303
PciI ACATGT 2 cut(s) 304, 5179
PcsI WCGNNNNNNNCGW 3 cut(s) 79, 111, 1309
PctI GAATGC 8 cut(s) 383, 385, 819, 3150, 3505, 5858, 5884, 5892
PdiI GCCGGC 1 cut(s) 3482
PdmI GAANNNNTTC 8 cut(s) 383, 708, 744, 2977, 3741, 5008, 5907, 7674
PfoI TCCNGGA 1 cut(s) 7314
PinAI ACCGGT 1 cut(s) 6741
PleI GAGTC 8 cut(s) 25, 136, 1844, 2257, 2787, 5155, 5690, 5851
PmaCI CACGTG 2 cut(s) 2423, 5615
PmlI CACGTG 2 cut(s) 2423, 5615
PpsI GAGTC 8 cut(s) 25, 136, 1844, 2257, 2787, 5155, 5690, 5851
Ppu21I YACGTR 4 cut(s) 2423, 2456, 5156, 5615
PpuMI RGGWCCY 5 cut(s) 2305, 2828, 5070, 6536, 7664
PscI ACATGT 2 cut(s) 304, 5179
PshBI ATTAAT 2 cut(s) 3776, 3969
PsiI TTATAA 2 cut(s) 1716, 7401
Psp5II RGGWCCY 5 cut(s) 2305, 2828, 5070, 6536, 7664
Psp6I CCWGG 8 cut(s) 2104, 2559, 4874, 5682, 6091, 6550, 6600, 7314
PspCI CACGTG 2 cut(s) 2423, 5615
PspEI GGTNACC 2 cut(s) 2589, 6737
PspFI CCCAGC 3 cut(s) 3475, 6086, 7170
PspGI CCWGG 8 cut(s) 2104, 2559, 4874, 5682, 6091, 6550, 6600, 7314
PspPPI RGGWCCY 5 cut(s) 2305, 2828, 5070, 6536, 7664
PstI CTGCAG 5 cut(s) 1930, 3066, 3253, 3355, 6972
PstNI CAGNNNCTG 6 cut(s) 1337, 3248, 3740, 4811, 5110, 6401
PvuII CAGCTG 3 cut(s) 4366, 7174, 7221
RseI CAYNNNNRTG 8 cut(s) 309, 903, 1607, 2090, 2913, 7101, 7104, 7743
SalI GTCGAC 3 cut(s) 2377, 2547, 6496
ScaI AGTACT 3 cut(s) 2044, 4973, 5371
SchI GAGTC 8 cut(s) 26, 137, 1844, 2258, 2788, 5156, 5690, 5852
SduI GDGCHC 5 cut(s) 928, 4002, 4357, 5620, 7639
SfuI TTCGAA 5 cut(s) 1702, 2971, 5452, 5806, 7526
SmaI CCCGGG 1 cut(s) 6932
SmiMI CAYNNNNRTG 8 cut(s) 309, 903, 1607, 2090, 2913, 7101, 7104, 7743
SmlI CTYRAG 9 cut(s) 589, 598, 656, 1268, 2435, 4932, 5980, 6886, 7082
SmoI CTYRAG 9 cut(s) 589, 598, 656, 1268, 2435, 4932, 5980, 6886, 7082
SpeI ACTAGT 1 cut(s) 6674
SphI GCATGC 4 cut(s) 902, 5830, 5927, 7646
SseBI AGGCCT 1 cut(s) 3303
SspI AATATT 6 cut(s) 156, 639, 1671, 4559, 6594, 7564
StuI AGGCCT 1 cut(s) 3303
StyI CCWWGG 7 cut(s) 1009, 1545, 2963, 5066, 6450, 6749, 7374
TaiI ACGT 7 cut(s) 2117, 2425, 2458, 4075, 5158, 5210, 5617
TaqII GACCGA 3 cut(s) 31, 3159, 7193
TauI GCSGC 5 cut(s) 8, 5602, 6293, 7553, 7625
TseFI GTSAC 6 cut(s) 1116, 1656, 2589, 2701, 6670, 6737
Tsp45I GTSAC 6 cut(s) 1116, 1656, 2589, 2701, 6670, 6737
TspGWI ACGGA 5 cut(s) 19, 3329, 3422, 4728, 7296
TspMI CCCGGG 1 cut(s) 6930
Vha464I CTTAAG 4 cut(s) 1268, 2435, 5980, 7082
VneI GTGCAC 2 cut(s) 924, 5616
VspI ATTAAT 2 cut(s) 3776, 3969
XagI CCTNNNNNAGG 1 cut(s) 5593
XbaI TCTAGA 1 cut(s) 2636
XmaI CCCGGG 1 cut(s) 6930
XmaJI CCTAGG 1 cut(s) 2963
XmiI GTMKAC 8 cut(s) 1309, 2238, 2378, 2548, 5710, 6497, 6859, 7071
XmnI GAANNNNTTC 8 cut(s) 383, 708, 744, 2977, 3741, 5008, 5907, 7674
ZrmI AGTACT 3 cut(s) 2044, 4973, 5371
Zsp2I ATGCAT 4 cut(s) 385, 3152, 3598, 5729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.