Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004626

Physical Location & Seq

Genomic Coordinates Forward (+)

53069645 .. 53072581

Gene Structure 2937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G031850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

TCAATTGCAGAAGTTGCAGAGGATTTGTGGGATCGATATGGACATGACTTTGGGACTGACTATTCAGGCCTTTTCAAAGCACTTTCTCATATCCATTATACTGTCCGTTTTGCTACTGCAGAGGCATTAGCTGCTGCTTTGGACGAAAATCCTGATTCTATACAGGAATCCCTTTCTACTTTATTCTCCCTGTATATCCGTGATGCTGGTTTGACTGGGAACAATGTTGATGCTGGTTGGCTGGGCCGGCAGGGTGTAGCTTTGGCATTGCATTCTTCTCCTGATGTACTGAGAACAAAAGACCTTCCTTTTGTTATGACCTTTTTGATTTCAAGAGCATTGGGAGGCTTTGAAACCGAATCCGGTGGTGCTGGGAGCTCGAAAAGTTCTTCTTCGGTGCTTGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTGGAGCTAGTGCCGGGATGAGGGGCACTTGGAAGTTGTGGTTGACAATACCGGTATGTGATAAGCACCAGTTCGTGCTGTCATGGGCTTGCATTTTACAAACGACAGGTGTATTTGAAGAAAAGTATATATATGAACACACCAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009682 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT HEAT_2

Protein Analysis

195

Amino Acids

20.73

Weight (kDa)

5.26

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64790 AT1G64790 AT1G64790
fragaria_vesca	FvH4_6g01410 FvH4_6g01410
malus_domestica	MD04G1233800.v1.1 MD04G1233900.v1.1 MD04G1234100.v1.1 MD12G1252000.v1.1
prunus_persica	Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1 Prupe.6G353600_v2.0.a1
pyrus_communis	pycom04g20770 pycom04g20790 pycom07g20320 pycom12g23140
rosa_chinensis	RchiOBHm_Chr3g0449041 RchiOBHm_Chr6g0282721
rosa_laevigata	RLG00000025859
rosa_multiflora	Rmu_co8514751.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427150 Rroxscaffold_7G00190110
rosa_rugosa	Rorug02G0617500
rosa_samantha	Rh3AG016000 Rh3BG016200 Rh3CG015200 Rh3DG016500
rosa_wichuraiana	Rw3G001200 Rw5G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	456
AgeI	ACCGGT	1 cut(s)	487
AgsI	TTSAA	4 cut(s)	76, 333, 353, 554
AluBI	AGCT	4 cut(s)	131, 260, 378, 443
AluI	AGCT	4 cut(s)	131, 260, 378, 443
Alw21I	GWGCWC	1 cut(s)	380
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	2 cut(s)	67, 244
ApeKI	GCWGC	2 cut(s)	131, 134
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AsiGI	ACCGGT	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	2 cut(s)	118, 121
BcnI	CCSGG	1 cut(s)	451
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	2 cut(s)	132, 135
BlsI	GCNGC	2 cut(s)	133, 136
Bme1390I	CCNGG	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	451
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	193, 220
BmuI	ACTGGG	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	459
BpuMI	CCSGG	1 cut(s)	451
Bsa29I	ATCGAT	1 cut(s)	34
BsaWI	WCCGGW	2 cut(s)	362, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse118I	RCCGGY	2 cut(s)	246, 487
Bse1I	ACTGG	2 cut(s)	220, 505
Bse3DI	GCAATG	1 cut(s)	266
BseCI	ATCGAT	1 cut(s)	34
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	2 cut(s)	220, 505
BseSI	GKGCMC	1 cut(s)	464
BseXI	GCAGC	2 cut(s)	118, 121
BseYI	CCCAGC	2 cut(s)	241, 371
BshFI	GGCC	2 cut(s)	69, 246
BshTI	ACCGGT	1 cut(s)	487
BshVI	ATCGAT	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	4 cut(s)	247, 363, 450, 488
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	2 cut(s)	69, 246
Bsp1286I	GDGCHC	2 cut(s)	380, 464
Bsp143I	GATC	1 cut(s)	31
BspANI	GGCC	2 cut(s)	69, 246
BspCNI	CTCAG	1 cut(s)	282
BspDI	ATCGAT	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	266
BsrFI	RCCGGY	2 cut(s)	246, 487
BsrI	ACTGG	2 cut(s)	220, 505
BssAI	RCCGGY	2 cut(s)	246, 487
BssMI	GATC	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	103
BstAPI	GCANNNNNTGC	2 cut(s)	14, 131
BstC8I	GCNNGC	2 cut(s)	248, 526
BstDEI	CTNAG	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	459
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 131, 247
BstSCI	CCNGG	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	464
BstV1I	GCAGC	2 cut(s)	118, 121
Bsu15I	ATCGAT	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	69, 246
BsuTUI	ATCGAT	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	248, 526
Cfr10I	RCCGGY	2 cut(s)	246, 487
Cfr13I	GGNCC	1 cut(s)	244
ClaI	ATCGAT	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	287
CspAI	ACCGGT	1 cut(s)	487
CviAII	CATG	2 cut(s)	44, 519
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	378
Eco147I	AGGCCT	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	380
FaeI	CATG	2 cut(s)	47, 522
FalI	AAGNNNNNCTT	2 cut(s)	376, 408
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	2 cut(s)	43, 518
Fnu4HI	GCNGC	2 cut(s)	132, 135
FokI	GGATG	1 cut(s)	466
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	2 cut(s)	132, 135
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	2 cut(s)	132, 135
GsaI	CCCAGC	2 cut(s)	245, 375
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	69, 246
HapII	CCGG	4 cut(s)	247, 363, 450, 488
Hin1II	CATG	2 cut(s)	47, 522
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	3 cut(s)	155, 167, 359
HpaII	CCGG	4 cut(s)	247, 363, 450, 488
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188III	TCNNGA	3 cut(s)	152, 281, 333
Hpy8I	GTNNAC	1 cut(s)	480
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	5 cut(s)	8, 17, 119, 271, 528
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 131, 247
HpyF3I	CTNAG	1 cut(s)	290
Hsp92II	CATG	2 cut(s)	47, 522
KroI	GCCGGC	1 cut(s)	246
KroNI	GCCGGC	1 cut(s)	248
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	375, 440
Lsp1109I	GCAGC	2 cut(s)	118, 121
LweI	GCATC	2 cut(s)	193, 220
MaeI	CTAG	1 cut(s)	444
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	267, 381, 384, 566
MfeI	CAATTG	1 cut(s)	3
MhlI	GDGCHC	2 cut(s)	380, 464
MluCI	AATT	1 cut(s)	3
MnlI	CCTC	5 cut(s)	13, 115, 338, 400, 450
MroNI	GCCGGC	1 cut(s)	246
MspI	CCGG	4 cut(s)	247, 363, 450, 488
MspR9I	CCNGG	1 cut(s)	451
MunI	CAATTG	1 cut(s)	3
Mva1269I	GAATGC	1 cut(s)	271
MwoI	GCNNNNNNNGC	3 cut(s)	14, 131, 247
NaeI	GCCGGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	451
NdeII	GATC	1 cut(s)	31
NgoMIV	GCCGGC	1 cut(s)	246
NlaIII	CATG	2 cut(s)	47, 522
PceI	AGGCCT	1 cut(s)	69
PctI	GAATGC	1 cut(s)	271
PdiI	GCCGGC	1 cut(s)	248
PfeI	GAWTC	3 cut(s)	155, 167, 359
PinAI	ACCGGT	1 cut(s)	487
PkrI	GCNGC	2 cut(s)	133, 136
Psp124BI	GAGCTC	1 cut(s)	380
PspFI	CCCAGC	2 cut(s)	241, 371
PspPI	GGNCC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	121
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SacI	GAGCTC	1 cut(s)	380
SatI	GCNGC	2 cut(s)	132, 135
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	451
SduI	GDGCHC	2 cut(s)	380, 464
SetI	ASST	7 cut(s)	133, 262, 306, 323, 380, 445, 547
SfaNI	GCATC	2 cut(s)	193, 220
SfcI	CTRYAG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	3
SseBI	AGGCCT	1 cut(s)	69
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	1 cut(s)	380
StuI	AGGCCT	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	2 cut(s)	34, 380
TasI	AATT	1 cut(s)	3
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	3 cut(s)	155, 167, 359
TseI	GCWGC	2 cut(s)	131, 134
TspDTI	ATGAA	1 cut(s)	585
TspGWI	ACGGA	2 cut(s)	95, 188
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.