Encoded by
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD05G1225700.v1.1 MD05G1225900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr1g0350291 RchiOBHm_Chr3g0465941 RchiOBHm_Chr6g0256401 RchiOBHm_Chr7g0217151 RchiOBHm_Chr7g0219351 |
| rosa_laevigata | RLG00000009798 RLG00000014784 RLG00000017295 RLG00000024613 |
| rosa_roxburghii | Rroxscaffold_5G00337830 Rroxscaffold_6G00414880 Rroxscaffold_7G00190630 |
| rosa_rugosa | Rorug01G0468500 |
| rosa_samantha | Rh3BG145700 Rh3CG146800 Rh3DG235900 Rh6AG082200 Rh7AG228100 Rh7CG242600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 211 |
| Acc36I | ACCTGC | 1 cut(s) | 211 |
| AclWI | GGATC | 1 cut(s) | 152 |
| AcsI | RAATTY | 1 cut(s) | 137 |
| AcuI | CTGAAG | 1 cut(s) | 170 |
| AfaI | GTAC | 1 cut(s) | 220 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 107 |
| AgsI | TTSAA | 1 cut(s) | 33 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 128, 160 |
| Alw21I | GWGCWC | 1 cut(s) | 153 |
| Alw44I | GTGCAC | 1 cut(s) | 149 |
| AlwI | GGATC | 1 cut(s) | 152 |
| ApaLI | GTGCAC | 1 cut(s) | 149 |
| ApoI | RAATTY | 1 cut(s) | 137 |
| BaeGI | GKGCMC | 2 cut(s) | 133, 153 |
| Bbv12I | GWGCWC | 1 cut(s) | 153 |
| BfuAI | ACCTGC | 1 cut(s) | 211 |
| BmsI | GCATC | 2 cut(s) | 81, 120 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 107 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 107 |
| BseSI | GKGCMC | 2 cut(s) | 133, 153 |
| BsiHKAI | GWGCWC | 1 cut(s) | 153 |
| BsiWI | CGTACG | 1 cut(s) | 218 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 107 |
| Bsp1286I | GDGCHC | 2 cut(s) | 133, 153 |
| Bsp143I | GATC | 1 cut(s) | 157 |
| BspMI | ACCTGC | 1 cut(s) | 211 |
| BspPI | GGATC | 1 cut(s) | 152 |
| BspQI | GCTCTTC | 1 cut(s) | 234 |
| BssMI | GATC | 1 cut(s) | 157 |
| Bst6I | CTCTTC | 1 cut(s) | 234 |
| BstC8I | GCNNGC | 4 cut(s) | 225, 270, 274, 278 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 105 |
| BstKTI | GATC | 1 cut(s) | 160 |
| BstMBI | GATC | 1 cut(s) | 157 |
| BstSLI | GKGCMC | 2 cut(s) | 133, 153 |
| BtgZI | GCGATG | 1 cut(s) | 221 |
| BtsIMutI | CAGTG | 1 cut(s) | 131 |
| BveI | ACCTGC | 1 cut(s) | 211 |
| Cac8I | GCNNGC | 4 cut(s) | 225, 270, 274, 278 |
| Csp6I | GTAC | 1 cut(s) | 219 |
| CviQI | GTAC | 1 cut(s) | 219 |
| DpnI | GATC | 1 cut(s) | 159 |
| DpnII | GATC | 1 cut(s) | 157 |
| Eam1104I | CTCTTC | 1 cut(s) | 234 |
| EarI | CTCTTC | 1 cut(s) | 234 |
| Eco57I | CTGAAG | 1 cut(s) | 170 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 105 |
| FaiI | YATR | 5 cut(s) | 13, 77, 90, 107, 166 |
| HinfI | GANTC | 1 cut(s) | 49 |
| Hpy166II | GTNNAC | 1 cut(s) | 151 |
| Hpy188I | TCNGA | 3 cut(s) | 54, 157, 248 |
| Hpy188III | TCNNGA | 1 cut(s) | 33 |
| Hpy8I | GTNNAC | 1 cut(s) | 151 |
| HpyCH4V | TGCA | 3 cut(s) | 11, 151, 255 |
| Kzo9I | GATC | 1 cut(s) | 157 |
| LguI | GCTCTTC | 1 cut(s) | 234 |
| LpnPI | CCDG | 4 cut(s) | 24, 30, 110, 216 |
| LweI | GCATC | 2 cut(s) | 81, 120 |
| MalI | GATC | 1 cut(s) | 159 |
| MboI | GATC | 1 cut(s) | 157 |
| MboII | GAAGA | 2 cut(s) | 170, 221 |
| MhlI | GDGCHC | 2 cut(s) | 133, 153 |
| MluCI | AATT | 1 cut(s) | 137 |
| MnlI | CCTC | 1 cut(s) | 111 |
| MseI | TTAA | 2 cut(s) | 123, 240 |
| NdeII | GATC | 1 cut(s) | 157 |
| PaqCI | CACCTGC | 1 cut(s) | 211 |
| PciSI | GCTCTTC | 1 cut(s) | 234 |
| PfeI | GAWTC | 1 cut(s) | 49 |
| Pfl23II | CGTACG | 1 cut(s) | 218 |
| PspLI | CGTACG | 1 cut(s) | 218 |
| RsaI | GTAC | 1 cut(s) | 220 |
| RsaNI | GTAC | 1 cut(s) | 219 |
| SapI | GCTCTTC | 1 cut(s) | 234 |
| SaqAI | TTAA | 2 cut(s) | 123, 240 |
| Sau3AI | GATC | 1 cut(s) | 157 |
| SduI | GDGCHC | 2 cut(s) | 133, 153 |
| SetI | ASST | 1 cut(s) | 205 |
| SfaNI | GCATC | 2 cut(s) | 81, 120 |
| Sse9I | AATT | 1 cut(s) | 137 |
| TasI | AATT | 1 cut(s) | 137 |
| TfiI | GAWTC | 1 cut(s) | 49 |
| Tru1I | TTAA | 2 cut(s) | 123, 240 |
| Tru9I | TTAA | 2 cut(s) | 123, 240 |
| TscAI | CASTG | 1 cut(s) | 138 |
| TspDTI | ATGAA | 1 cut(s) | 224 |
| TspRI | CASTG | 1 cut(s) | 138 |
| VneI | GTGCAC | 1 cut(s) | 149 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 105 |
| XapI | RAATTY | 1 cut(s) | 137 |