RLG00000014784

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010605
Physical Location & Seq
Forward (+)
57452367 .. 57453304
938 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014784

Sequence Viewer

Length: 342 bp
ATGGGTCCTCACCAGTTTGTTCATATTTATAGCGGGGTTTTGAAGTTTGATGCTTGGTTGATTTGTGTAGTGGGAAAGAATGGGTTTTTATTGAGATTTTTCATCAACAAGGAAGATGGAGCTATCCCCGGTCTCACTTTGACAATTGAAGGAAACCTCCCTAAAGGTTTGAGAGGGTCAAGGATACAGAAATCTATCATTGTTGGGATCATAATCGTTCATTATGTGTTCCTGCCTCTGACAGGCATATTGATCATTAAAGGGGCGCTTAAATTTTTCTTAGTGCACTCTGATCCTTTGTATATATTTGCTATCCTGAGTCTGCACTCCCACCTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

114

Amino Acids

12.58

Weight (kDa)

9.67

Isoelectric Point (pI)

26.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 33
AclWI GGATC 2 cut(s) 215, 287
AcsI RAATTY 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 2 cut(s) 43, 149
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 137
Alw44I GTGCAC 1 cut(s) 284
AlwI GGATC 2 cut(s) 215, 287
ApaLI GTGCAC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 272
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 5
AsuC2I CCSGG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 288
BccI CCATC 1 cut(s) 110
BciVI GTATCC 1 cut(s) 177
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 137
BfoI RGCGCY 1 cut(s) 269
BfuI GTATCC 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 13
Bse8I GATNNNNATC 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 127
BseJI GATNNNNATC 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 13
BseSI GKGCMC 1 cut(s) 288
BsgI GTGCAG 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 137
Bso31I GGTCTC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 3 cut(s) 207, 252, 292
BspACI CCGC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 215, 287
BspTNI GGTCTC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 3 cut(s) 207, 252, 292
BstDEI CTNAG 2 cut(s) 280, 317
BstENI CCTNNNNNAGG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 3 cut(s) 210, 255, 295
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 3 cut(s) 207, 252, 292
BstSCI CCNGG 1 cut(s) 127
BstSLI GKGCMC 1 cut(s) 288
BsuI GTATCC 1 cut(s) 177
CfoI GCGC 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 5
CviJI RGCY 1 cut(s) 122
CviKI_1 RGCY 1 cut(s) 122
DdeI CTNAG 2 cut(s) 280, 317
DpnI GATC 3 cut(s) 209, 254, 294
DpnII GATC 3 cut(s) 207, 252, 292
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 5
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 5
FaiI YATR 7 cut(s) 24, 30, 212, 225, 248, 303, 305
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FauI CCCGC 1 cut(s) 26
FbaI TGATCA 1 cut(s) 252
GlaI GCGC 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 269
HapII CCGG 1 cut(s) 129
HhaI GCGC 1 cut(s) 268
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HinfI GANTC 1 cut(s) 319
HpaII CCGG 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 240, 292
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 143
HpyCH4V TGCA 3 cut(s) 286, 325, 337
HpyF3I CTNAG 2 cut(s) 280, 317
HspAI GCGC 1 cut(s) 266
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 3 cut(s) 207, 252, 292
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 5 cut(s) 26, 142, 228, 245, 329
LweI GCATC 1 cut(s) 40
MalI GATC 3 cut(s) 209, 254, 294
MboI GATC 3 cut(s) 207, 252, 292
MboII GAAGA 1 cut(s) 125
MfeI CAATTG 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 2 cut(s) 144, 272
MlyI GAGTC 1 cut(s) 328
MnlI CCTC 4 cut(s) 18, 167, 167, 246
MseI TTAA 2 cut(s) 258, 270
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 129
MunI CAATTG 1 cut(s) 144
NciI CCSGG 1 cut(s) 129
NdeII GATC 3 cut(s) 207, 252, 292
NlaIV GGNNCC 1 cut(s) 6
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
SaqAI TTAA 2 cut(s) 258, 270
Sau3AI GATC 3 cut(s) 207, 252, 292
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 288
SetI ASST 4 cut(s) 124, 159, 169, 336
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 1 cut(s) 5
Sse9I AATT 2 cut(s) 144, 272
SsiI CCGC 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 127
TasI AATT 2 cut(s) 144, 272
Tru1I TTAA 2 cut(s) 258, 270
Tru9I TTAA 2 cut(s) 258, 270
TspDTI ATGAA 3 cut(s) 11, 91, 209
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 5
XagI CCTNNNNNAGG 1 cut(s) 240
XapI RAATTY 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.