RchiOBHm_Chr7g0219351

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010605
Physical Location & Seq
Forward (+)
37733407 .. 37733592
186 bp
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UTR
Exon/CDS
Intron
PRQ19633

Sequence Viewer

Length: 186 bp
ATGTGCGACTGTTTCTCAATGCATGCTTTCTCTCTTAACATTATCCTTAATGTTTTGGCAGCAACCATCACTCAATTGTTCGGAGCAGGAGAGAAAGAGTGTTCAGTTATCATGCTGTGGACTTATGTTCTTGCTTCGGTAGCGCTTACTTTTTGGTCTGCCTTCTTCATGTGGCTTGTCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

61

Amino Acids

6.83

Weight (kDa)

4.65

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 18 - 52 1.9e-07 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfeI AGCGCT 1 cut(s) 144
Aor51HI AGCGCT 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BseXI GCAGC 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 145
CviAII CATG 3 cut(s) 23, 112, 169
CviJI RGCY 1 cut(s) 175
CviKI_1 RGCY 1 cut(s) 175
Eco47III AGCGCT 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 24
FaeI CATG 3 cut(s) 26, 115, 172
FaiI YATR 4 cut(s) 24, 113, 126, 170
FatI CATG 3 cut(s) 22, 111, 168
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
GlaI GCGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 146
HhaI GCGC 1 cut(s) 145
Hin1II CATG 3 cut(s) 26, 115, 172
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
Hsp92II CATG 3 cut(s) 26, 115, 172
HspAI GCGC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 1 cut(s) 72
Lsp1109I GCAGC 1 cut(s) 71
MboII GAAGA 1 cut(s) 157
MfeI CAATTG 1 cut(s) 74
MluCI AATT 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 24
MseI TTAA 2 cut(s) 36, 48
MunI CAATTG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 140
NlaIII CATG 3 cut(s) 26, 115, 172
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 1 cut(s) 26
PaeI GCATGC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 61
SaqAI TTAA 2 cut(s) 36, 48
SatI GCNGC 1 cut(s) 60
SgeI CNNG 5 cut(s) 35, 99, 124, 143, 181
SphI GCATGC 1 cut(s) 26
Sse9I AATT 1 cut(s) 74
TaaI ACNGT 1 cut(s) 11
TasI AATT 1 cut(s) 74
Tru1I TTAA 2 cut(s) 36, 48
Tru9I TTAA 2 cut(s) 36, 48
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 157
XceI RCATGY 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.