Rh3BG145700

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0010605
Physical Location & Seq
Reverse (-)
12333196 .. 12337923
4728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG145700.1

Sequence Viewer

Length: 234 bp
ATGGCGGCGTCGCTGCCGGTGGGCATTCCGGACTGGTCTAAGATCATGAGGAACGAGTACCGAGAAAACCGACGGAGGGACGATGACGAAGATGGAGCTATCCCCGGTCTCACTTTGACAATTGAAGGAAAACTCCCTAAAGGGTATGCAATGCCAATTATATACCAAAGTCTACATTTCCCAGATTCATGCTTAAGGAACCATCACCCAGTTGTTCGGAGCAGGAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

77

Amino Acids

8.89

Weight (kDa)

7.95

Isoelectric Point (pI)

75.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 172
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 76
AflII CTTAAG 1 cut(s) 193
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 113
Aor13HI TCCGGA 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 13
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 197
BccI CCATC 2 cut(s) 86, 210
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 113
BfrI CTTAAG 1 cut(s) 193
BisI GCNGC 2 cut(s) 6, 14
BlsI GCNGC 2 cut(s) 7, 15
Bme1390I CCNGG 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 105
BmrI ACTGGG 1 cut(s) 203
BmuI ACTGGG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 38, 209
Bse3DI GCAATG 1 cut(s) 156
BseAI TCCGGA 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 38, 209
BsiSI CCGG 3 cut(s) 17, 29, 105
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 24
Bso31I GGTCTC 1 cut(s) 113
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 28
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 200
BspTI CTTAAG 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 2 cut(s) 38, 209
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 42
BssNI GRCGYC 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 8
BstAFI CTTAAG 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 39
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 103
CciI TCATGA 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 16
Csp6I GTAC 1 cut(s) 58
CviAII CATG 2 cut(s) 46, 189
CviJI RGCY 1 cut(s) 98
CviKI_1 RGCY 1 cut(s) 98
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 113
FaeI CATG 2 cut(s) 49, 192
FaiI YATR 5 cut(s) 47, 147, 161, 163, 190
FaqI GGGAC 1 cut(s) 92
FatI CATG 2 cut(s) 45, 188
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 6, 14
Fsp4HI GCNGC 2 cut(s) 6, 14
GluI GCNGC 2 cut(s) 6, 14
HapII CCGG 3 cut(s) 17, 29, 105
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 2 cut(s) 49, 192
HinfI GANTC 1 cut(s) 185
HpaII CCGG 3 cut(s) 17, 29, 105
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 2 cut(s) 29, 46
Hpy8I GTNNAC 1 cut(s) 173
Hpy99I CGWCG 2 cut(s) 13, 75
HpyAV CCTTC 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 2 cut(s) 49, 192
Kpn2I TCCGGA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 2 cut(s) 95, 219
LpnPI CCDG 7 cut(s) 19, 30, 42, 118, 195, 208, 222
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 1 cut(s) 101
MfeI CAATTG 1 cut(s) 120
MluCI AATT 2 cut(s) 120, 156
MnlI CCTC 2 cut(s) 42, 69
MroI TCCGGA 1 cut(s) 28
MseI TTAA 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 193
MspI CCGG 3 cut(s) 17, 29, 105
MspR9I CCNGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 24
NciI CCSGG 1 cut(s) 105
NdeII GATC 1 cut(s) 42
NlaIII CATG 2 cut(s) 49, 192
NlaIV GGNNCC 1 cut(s) 200
PagI TCATGA 1 cut(s) 45
PctI GAATGC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 2 cut(s) 7, 15
PspN4I GGNNCC 1 cut(s) 200
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 2 cut(s) 6, 14
Sau3AI GATC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 105
SetI ASST 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 2 cut(s) 120, 156
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 103
TasI AATT 2 cut(s) 120, 156
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 88
Vha464I CTTAAG 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.