Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010605

Physical Location & Seq

Genomic Coordinates Forward (+)

37148464 .. 37152876

Gene Structure 4413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00414880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAAGACAAGAATTCTCATAGTCCACACCGATTCCGTTATCGATATTAACCGCCACATCGTCCACAGTGATGGAGCCAGTCGGAAGGAACTCCCTCTGATGTTCTTAATCTGCCTGAAAAGAAAGAGTAGGAAATCTTTTCAGGATTATTTGGTTGGGGGAAAAAGAAAAAAAGAGAGAAAGAAAGTAGGATCAATATTCGGGGCTGGAATTTTGGGGTCAAAGCTTAAACTGTTAAATTTAAGTGATTTGAGTGATCAATCAGTCCATTCTCTACTTGATCAAATGGGAGTGGATTGCTATATAGGAGTGCCTGCGATTCGAAAGCAAGCATTCAAACCTGCAGCAAGAAAACAATGTCGCGGCATCATTGGTCAAGAAACATTGGCTGGAGCTGCTTCTTTAGATACATCCAGTCAGGTTTACCCATTAAAATTATGCGCACAACCCACAAAGCAGAGTCAGAAGCTGGCTTTGCGAGCAAATCCAAAGAGAGCTTCTGTGGATGAGAACAACAAGAGTGAGGCTGGAAATGTATGCGTCCAGCATAAGAGGAGGGTAGTGCTTCAGGATGCAACCAATGCTTTCTGTAAACCTTCATATGGGGACTGCTTCAATGCAACTGAAGTTCAGATACTGATCTTTTTTGTCGTGATTGGTGACAGTTCTTATTCCAATGGCAATGCTAATGTGAATGGAAATGGGAAAGGAGTAAATGGAAATGGAGTGAAGAGAAAAAGCCATCGTGAAGAGCTGCTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010374 GO:0010389 GO:0010440 GO:0010444 GO:0010564 GO:0022402 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051726 GO:0065007 GO:0071704 GO:0090304 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1901576 GO:1901987 GO:1901990 GO:1902749 GO:1905392 GO:1905393 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

254

Amino Acids

27.83

Weight (kDa)

9.87

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010605)

Species	Orthologous Gene IDs
malus_domestica	MD05G1225700.v1.1 MD05G1225900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0350291 RchiOBHm_Chr3g0465941 RchiOBHm_Chr6g0256401 RchiOBHm_Chr7g0217151 RchiOBHm_Chr7g0219351
rosa_laevigata	RLG00000009798 RLG00000014784 RLG00000017295 RLG00000024613
rosa_roxburghii	Rroxscaffold_5G00337830 Rroxscaffold_6G00414880 Rroxscaffold_7G00190630
rosa_rugosa	Rorug01G0468500
rosa_samantha	Rh3BG145700 Rh3CG146800 Rh3DG235900 Rh6AG082200 Rh7AG228100 Rh7CG242600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	442
Acc36I	ACCTGC	1 cut(s)	349
AccII	CGCG	1 cut(s)	363
AciI	CCGC	2 cut(s)	52, 363
AclWI	GGATC	1 cut(s)	199
AcsI	RAATTY	3 cut(s)	12, 210, 238
AcuI	CTGAAG	2 cut(s)	551, 645
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	2 cut(s)	337, 616
AjuI	GAANNNNNNNTTGG	2 cut(s)	481, 513
AluBI	AGCT	5 cut(s)	226, 395, 469, 497, 754
AluI	AGCT	5 cut(s)	226, 395, 469, 497, 754
AlwI	GGATC	1 cut(s)	199
AlwNI	CAGNNNCTG	2 cut(s)	469, 637
ApeKI	GCWGC	3 cut(s)	344, 395, 754
ApoI	RAATTY	3 cut(s)	12, 210, 238
AspLEI	GCGC	1 cut(s)	443
AsuHPI	GGTGA	1 cut(s)	671
AsuII	TTCGAA	1 cut(s)	322
BarI	GAAGNNNNNNTAC	2 cut(s)	618, 650
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	3 cut(s)	356, 382, 741
BccI	CCATC	2 cut(s)	65, 750
BclI	TGATCA	2 cut(s)	256, 280
BfmI	CTRYAG	1 cut(s)	342
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	4 cut(s)	345, 364, 396, 755
BlsI	GCNGC	4 cut(s)	346, 365, 397, 756
BmiI	GGNNCC	1 cut(s)	76
BmsI	GCATC	2 cut(s)	375, 562
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	322
Bsa29I	ATCGAT	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	638
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	2 cut(s)	78, 414
Bse3DI	GCAATG	1 cut(s)	688
Bse8I	GATNNNNATC	1 cut(s)	638
BseCI	ATCGAT	1 cut(s)	42
BseGI	GGATG	3 cut(s)	410, 511, 577
BseJI	GATNNNNATC	1 cut(s)	638
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	1 cut(s)	688
BseNI	ACTGG	2 cut(s)	78, 414
BseRI	GAGGAG	1 cut(s)	568
BseXI	GCAGC	3 cut(s)	356, 382, 741
Bsh1236I	CGCG	1 cut(s)	363
BshVI	ATCGAT	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmFI	GGGAC	1 cut(s)	620
BsmI	GAATGC	1 cut(s)	332
Bsp119I	TTCGAA	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	191, 256, 280, 639
BspACI	CCGC	2 cut(s)	52, 363
BspDI	ATCGAT	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	346
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	744
BspT104I	TTCGAA	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	688
BsrI	ACTGG	2 cut(s)	78, 414
BssMI	GATC	4 cut(s)	191, 256, 280, 639
Bst4CI	ACNGT	3 cut(s)	68, 234, 665
Bst6I	CTCTTC	2 cut(s)	725, 744
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	4 cut(s)	315, 330, 471, 480
BstF5I	GGATG	3 cut(s)	410, 511, 577
BstFNI	CGCG	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	443
BstKTI	GATC	4 cut(s)	194, 259, 283, 642
BstMBI	GATC	4 cut(s)	191, 256, 280, 639
BstMWI	GCNNNNNNNGC	4 cut(s)	395, 475, 479, 581
BstSFI	CTRYAG	1 cut(s)	342
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	3 cut(s)	356, 382, 741
BstV2I	GAAGAC	1 cut(s)	11
BstXI	CCANNNNNNTGG	1 cut(s)	71
Bsu15I	ATCGAT	1 cut(s)	42
BsuTUI	ATCGAT	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	410, 511, 577
BtsIMutI	CAGTG	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	4 cut(s)	315, 330, 471, 480
CaiI	CAGNNNCTG	2 cut(s)	469, 637
CfoI	GCGC	1 cut(s)	443
ClaI	ATCGAT	1 cut(s)	42
CseI	GACGC	1 cut(s)	529
DpnI	GATC	4 cut(s)	193, 258, 282, 641
DpnII	GATC	4 cut(s)	191, 256, 280, 639
Eam1104I	CTCTTC	2 cut(s)	725, 744
EarI	CTCTTC	2 cut(s)	725, 744
Eco57I	CTGAAG	2 cut(s)	551, 645
EcoRI	GAATTC	1 cut(s)	12
FaiI	YATR	9 cut(s)	20, 303, 305, 439, 538, 549, 601, 603, 763
FaqI	GGGAC	1 cut(s)	620
FauNDI	CATATG	1 cut(s)	601
FbaI	TGATCA	2 cut(s)	256, 280
Fnu4HI	GCNGC	4 cut(s)	345, 364, 396, 755
FokI	GGATG	3 cut(s)	397, 518, 584
Fsp4HI	GCNGC	4 cut(s)	345, 364, 396, 755
FspAI	RTGCGCAY	1 cut(s)	442
FspI	TGCGCA	1 cut(s)	442
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	4 cut(s)	345, 364, 396, 755
GsuI	CTGGAG	1 cut(s)	411
HgaI	GACGC	1 cut(s)	529
HhaI	GCGC	1 cut(s)	443
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	3 cut(s)	32, 319, 460
HphI	GGTGA	1 cut(s)	671
Hpy166II	GTNNAC	4 cut(s)	25, 64, 424, 593
Hpy188I	TCNGA	4 cut(s)	84, 99, 465, 633
Hpy188III	TCNNGA	5 cut(s)	143, 377, 569, 652, 746
Hpy8I	GTNNAC	4 cut(s)	25, 64, 424, 593
HpyAV	CCTTC	2 cut(s)	79, 606
HpyCH4III	ACNGT	3 cut(s)	68, 234, 665
HpyCH4V	TGCA	3 cut(s)	344, 575, 620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	395, 475, 479, 581
HspAI	GCGC	1 cut(s)	441
Ksp22I	TGATCA	2 cut(s)	256, 280
Kzo9I	GATC	4 cut(s)	191, 256, 280, 639
LguI	GCTCTTC	1 cut(s)	744
LmnI	GCTCC	2 cut(s)	74, 392
Lsp1109I	GCAGC	3 cut(s)	356, 382, 741
LweI	GCATC	2 cut(s)	375, 562
MaeIII	GTNAC	1 cut(s)	659
MalI	GATC	4 cut(s)	193, 258, 282, 641
MboI	GATC	4 cut(s)	191, 256, 280, 639
MboII	GAAGA	3 cut(s)	16, 742, 761
MluCI	AATT	4 cut(s)	12, 210, 238, 434
MlyI	GAGTC	1 cut(s)	469
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	4 cut(s)	105, 517, 546, 549
MseI	TTAA	6 cut(s)	48, 107, 228, 236, 242, 431
MslI	CAYNNNNRTG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	332
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	4 cut(s)	395, 475, 479, 581
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	4 cut(s)	191, 256, 280, 639
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	659
NsbI	TGCGCA	1 cut(s)	442
NspV	TTCGAA	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	744
PctI	GAATGC	1 cut(s)	332
PfeI	GAWTC	2 cut(s)	32, 319
PkrI	GCNGC	4 cut(s)	346, 365, 397, 756
PleI	GAGTC	1 cut(s)	468
PpsI	GAGTC	1 cut(s)	468
PspN4I	GGNNCC	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	2 cut(s)	469, 637
RseI	CAYNNNNRTG	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	744
SaqAI	TTAA	6 cut(s)	48, 107, 228, 236, 242, 431
SatI	GCNGC	4 cut(s)	345, 364, 396, 755
Sau3AI	GATC	4 cut(s)	191, 256, 280, 639
SchI	GAGTC	1 cut(s)	469
SetI	ASST	8 cut(s)	228, 343, 397, 423, 471, 499, 598, 756
SfaNI	GCATC	2 cut(s)	375, 562
SfcI	CTRYAG	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	4 cut(s)	12, 210, 238, 434
SsiI	CCGC	2 cut(s)	52, 363
SspI	AATATT	1 cut(s)	198
TaaI	ACNGT	3 cut(s)	68, 234, 665
TaqI	TCGA	2 cut(s)	42, 322
TasI	AATT	4 cut(s)	12, 210, 238, 434
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	2 cut(s)	32, 319
Tru1I	TTAA	6 cut(s)	48, 107, 228, 236, 242, 431
Tru9I	TTAA	6 cut(s)	48, 107, 228, 236, 242, 431
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	3 cut(s)	344, 395, 754
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	2 cut(s)	17, 588
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	3 cut(s)	12, 210, 238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.