Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010605

Physical Location & Seq

Genomic Coordinates Forward (+)

37465108 .. 37467442

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024613

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGTCCTCACCAAGATGGAGCTATCCCCGGTCTCACTTTGACAATTGAAGGAAACCTCCCTAAAGGAACCATCACCCAGTTGTTCGGAGCAGGAGAGAATGAATGTTCAATAATCCTGCTGTGGACTAAAGTATTTGCTTCAGTATCACTCACTTTATGGTCTGCCTTCTTGATGTGGTTTGTGGCCGGGGTTGATGGATTGTTAAGCAGATTCTGTAATAGAACAGTGGGAGTGGATTGCTATATAGGAGTGCCTGCGATACGAAAGCAAGCATTCAAACCTGCAGCAAGAAAACAATATCACGGCATCATTGGTCAAGACACATTGGCTGGAGCTGCTTCTTTAGATACATCCAGTCAGGTTTACCCATTAAAATTATGTGCACAACCCACAAAGCAGAGTCAGAAGCTGACTTTGCGAGCGAATCCAAAGAGAGCTTCTGTGGATGAGAACAACAAGAGTGAGGCTGGAAATGCATGCGTCCAGCATAAGAGGAGGGTAGTGCTTCAGGATGTAACCAATGCTTTCTGTAAACCTTTATATGGGGACTGCTTCAATGCAACTGAAGTTCAGTTATTCCAATGGCAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010374 GO:0010389 GO:0010440 GO:0010444 GO:0010564 GO:0022402 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051726 GO:0065007 GO:0071704 GO:0090304 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1901576 GO:1901987 GO:1901990 GO:1902749 GO:1905392 GO:1905393 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

199

Amino Acids

21.62

Weight (kDa)

8.94

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010605)

Species	Orthologous Gene IDs
malus_domestica	MD05G1225700.v1.1 MD05G1225900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0350291 RchiOBHm_Chr3g0465941 RchiOBHm_Chr6g0256401 RchiOBHm_Chr7g0217151 RchiOBHm_Chr7g0219351
rosa_laevigata	RLG00000009798 RLG00000014784 RLG00000017295 RLG00000024613
rosa_roxburghii	Rroxscaffold_5G00337830 Rroxscaffold_6G00414880 Rroxscaffold_7G00190630
rosa_rugosa	Rorug01G0468500
rosa_samantha	Rh3BG145700 Rh3CG146800 Rh3DG235900 Rh6AG082200 Rh7AG228100 Rh7CG242600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	186
AcuI	CTGAAG	3 cut(s)	126, 494, 588
AfiI	CCNNNNNNNGG	1 cut(s)	545
AgsI	TTSAA	4 cut(s)	50, 111, 280, 559
AjuI	GAANNNNNNNTTGG	2 cut(s)	424, 456
AluBI	AGCT	4 cut(s)	23, 338, 412, 440
AluI	AGCT	4 cut(s)	23, 338, 412, 440
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	38
Alw44I	GTGCAC	1 cut(s)	384
AlwNI	CAGNNNCTG	2 cut(s)	216, 412
AoxI	GGCC	1 cut(s)	186
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	287, 338
AspS9I	GGNCC	1 cut(s)	5
AsuC2I	CCSGG	2 cut(s)	30, 190
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	2 cut(s)	299, 325
BccI	CCATC	3 cut(s)	11, 80, 191
BceAI	ACGGC	1 cut(s)	322
BcnI	CCSGG	2 cut(s)	30, 190
BcoDI	GTCTC	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	2 cut(s)	288, 339
BlsI	GCNGC	2 cut(s)	289, 340
Bme1390I	CCNGG	2 cut(s)	30, 190
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	2 cut(s)	6, 70
BmrFI	CCNGG	2 cut(s)	30, 190
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	318
BmuI	ACTGGG	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	354
BpuMI	CCSGG	2 cut(s)	30, 190
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	28, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse1I	ACTGG	2 cut(s)	79, 357
Bse3DI	GCAATG	1 cut(s)	596
BseDI	CCNNGG	2 cut(s)	28, 189
BseGI	GGATG	3 cut(s)	353, 454, 520
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMI	GCAATG	1 cut(s)	596
BseNI	ACTGG	2 cut(s)	79, 357
BseRI	GAGGAG	1 cut(s)	511
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	299, 325
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	30, 189
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	563
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	188
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	188
BspLI	GGNNCC	2 cut(s)	6, 70
BspMAI	CTGCAG	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	79, 357
BssECI	CCNNGG	2 cut(s)	28, 189
Bst4CI	ACNGT	1 cut(s)	229
BstC8I	GCNNGC	4 cut(s)	258, 273, 423, 481
BstF5I	GGATG	3 cut(s)	353, 454, 520
BstMAI	GTCTC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 418, 476
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	2 cut(s)	28, 188
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	299, 325
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	353, 454, 520
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	4 cut(s)	258, 273, 423, 481
CaiI	CAGNNNCTG	2 cut(s)	216, 412
Cfr13I	GGNCC	1 cut(s)	5
CseI	GACGC	1 cut(s)	472
CviAII	CATG	1 cut(s)	480
CviJI	RGCY	7 cut(s)	23, 188, 332, 338, 412, 440, 470
CviKI_1	RGCY	7 cut(s)	23, 188, 332, 338, 412, 440, 470
EaeI	YGGCCR	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	5
Eco57I	CTGAAG	3 cut(s)	126, 494, 588
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	481
FaeI	CATG	1 cut(s)	483
FaiI	YATR	8 cut(s)	160, 246, 248, 382, 481, 492, 544, 546
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	1 cut(s)	479
Fnu4HI	GCNGC	2 cut(s)	288, 339
FokI	GGATG	3 cut(s)	340, 461, 527
Fsp4HI	GCNGC	2 cut(s)	288, 339
GluI	GCNGC	2 cut(s)	288, 339
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	2 cut(s)	30, 189
HgaI	GACGC	1 cut(s)	472
Hin1II	CATG	1 cut(s)	483
HinfI	GANTC	3 cut(s)	213, 403, 427
HpaII	CCGG	2 cut(s)	30, 189
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	4 cut(s)	126, 367, 386, 536
Hpy188I	TCNGA	2 cut(s)	89, 408
Hpy188III	TCNNGA	3 cut(s)	172, 320, 512
Hpy8I	GTNNAC	4 cut(s)	126, 367, 386, 536
HpyAV	CCTTC	2 cut(s)	44, 178
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	287, 386, 479, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 418, 476
Hsp92II	CATG	1 cut(s)	483
LmnI	GCTCC	3 cut(s)	20, 89, 335
Lsp1109I	GCAGC	2 cut(s)	299, 325
LweI	GCATC	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	517
MfeI	CAATTG	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	2 cut(s)	45, 377
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	5 cut(s)	18, 68, 460, 489, 492
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	2 cut(s)	206, 374
MslI	CAYNNNNRTG	1 cut(s)	15
MspI	CCGG	2 cut(s)	30, 189
MspR9I	CCNGG	2 cut(s)	30, 190
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	338, 418, 476
NciI	CCSGG	2 cut(s)	30, 190
NlaIII	CATG	1 cut(s)	483
NlaIV	GGNNCC	2 cut(s)	6, 70
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	1 cut(s)	483
PaeI	GCATGC	1 cut(s)	483
PctI	GAATGC	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	213, 427
PkrI	GCNGC	2 cut(s)	289, 340
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	6, 70
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PstI	CTGCAG	1 cut(s)	289
PstNI	CAGNNNCTG	2 cut(s)	216, 412
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	206, 374
SatI	GCNGC	2 cut(s)	288, 339
Sau96I	GGNCC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	2 cut(s)	30, 190
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	8 cut(s)	25, 60, 286, 340, 366, 414, 442, 541
SfaNI	GCATC	1 cut(s)	318
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	15
SphI	GCATGC	1 cut(s)	483
Sse9I	AATT	2 cut(s)	45, 377
StyD4I	CCNGG	2 cut(s)	28, 188
TaaI	ACNGT	1 cut(s)	229
TasI	AATT	2 cut(s)	45, 377
TfiI	GAWTC	2 cut(s)	213, 427
Tru1I	TTAA	2 cut(s)	206, 374
Tru9I	TTAA	2 cut(s)	206, 374
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	2 cut(s)	287, 338
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	234
VneI	GTGCAC	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	5
XceI	RCATGY	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.