Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010605

Physical Location & Seq

Genomic Coordinates Reverse (-)

12523172 .. 12525072

Gene Structure 1901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43205

Sequence Viewer

CDS Protein Promoter (2k)

Length: 144 bp

ATGAATGTAGGAACCATCACCCAGTTGTTCGGAGCAGGAGAGAATGAGTGTTCAATAATCCTGCTGTGGACTAAAGTATTTGCTTCAGTATCCCTCACTTTATGGTCTGCCTTCTTGATGTGGTTTGTGGCCGGGCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

47

Amino Acids

5.18

Weight (kDa)

4.53

Isoelectric Point (pI)

18.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	1 - 35	1.7e-06	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010605)

Species	Orthologous Gene IDs
malus_domestica	MD05G1225700.v1.1 MD05G1225900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0350291 RchiOBHm_Chr3g0465941 RchiOBHm_Chr6g0256401 RchiOBHm_Chr7g0217151 RchiOBHm_Chr7g0219351
rosa_laevigata	RLG00000009798 RLG00000014784 RLG00000017295 RLG00000024613
rosa_roxburghii	Rroxscaffold_5G00337830 Rroxscaffold_6G00414880 Rroxscaffold_7G00190630
rosa_rugosa	Rorug01G0468500
rosa_samantha	Rh3BG145700 Rh3CG146800 Rh3DG235900 Rh6AG082200 Rh7AG228100 Rh7CG242600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	129
AcuI	CTGAAG	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	54
AoxI	GGCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	10
BccI	CCATC	1 cut(s)	23
BciVI	GTATCC	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	133
BfuI	GTATCC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	133
BmrI	ACTGGG	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	132
BsnI	GGCC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	131
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	131
CviJI	RGCY	1 cut(s)	131
CviKI_1	RGCY	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	69
FaiI	YATR	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	1 cut(s)	132
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	3 cut(s)	21, 35, 74
MnlI	CCTC	1 cut(s)	104
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	133
NciI	CCSGG	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	133
SgeI	CNNG	4 cut(s)	34, 48, 73, 127
StyD4I	CCNGG	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.