Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010605

Physical Location & Seq

Genomic Coordinates Forward (+)

56099381 .. 56100676

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0468500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCCAAACACTAACCCTAACCCAGCCATGAGCCTGAACCCCACATCCTCACCAACGGACCTGAACCCAGCCAAGAAGTCGAAGCCGAACAGCCCCGAGCTGCGAGAATATGAACTTCCCGAGTGCCAGATAGATGCCGATGTTCTAAAACTCTTGCCAGAAGAAAGGATGCGAAGGAGTTGGTTGGCCTTTGGCGAAGAGTTGAAGAAAAATCCTCCTCCAAAGGGAGTCTTACCCCATGGACCAAAATTCGATCCTTCACAACCTTTACCAAAGGGATATGCATGGAGTTCTTACATCCCTGGGAGTGGAATTAAATCTTTTCCTGTTAGGATGCATTGCATTGGCTGTGGCGTGGCTGGAGATCACTGGCCTGATGACTGCCCAAAAAAGGGTACCGAAGAGTTCAAGAGGAATTTCACCAGTATTGTCGAGAATTATCTTCATGAGACCGAGAAAAGGACCAAGACCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.77

Weight (kDa)

8.63

Isoelectric Point (pI)

59.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010605)

Species	Orthologous Gene IDs
malus_domestica	MD05G1225700.v1.1 MD05G1225900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0350291 RchiOBHm_Chr3g0465941 RchiOBHm_Chr6g0256401 RchiOBHm_Chr7g0217151 RchiOBHm_Chr7g0219351
rosa_laevigata	RLG00000009798 RLG00000014784 RLG00000017295 RLG00000024613
rosa_roxburghii	Rroxscaffold_5G00337830 Rroxscaffold_6G00414880 Rroxscaffold_7G00190630
rosa_rugosa	Rorug01G0468500
rosa_samantha	Rh3BG145700 Rh3CG146800 Rh3DG235900 Rh6AG082200 Rh7AG228100 Rh7CG242600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	395
AccB1I	GGYRCC	1 cut(s)	395
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	2 cut(s)	248, 415
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	5 cut(s)	224, 308, 391, 392, 459
AgsI	TTSAA	2 cut(s)	205, 409
AjnI	CCWGG	1 cut(s)	301
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	248
Ama87I	CYCGRG	2 cut(s)	95, 119
AoxI	GGCC	2 cut(s)	186, 371
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	2 cut(s)	248, 415
Asp718I	GGTACC	1 cut(s)	395
AspS9I	GGNCC	3 cut(s)	58, 242, 462
AsuHPI	GGTGA	2 cut(s)	42, 412
AvaI	CYCGRG	2 cut(s)	95, 119
AvaII	GGWCC	3 cut(s)	58, 242, 462
BanI	GGYRCC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	443
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	3 cut(s)	58, 242, 462
BmeT110I	CYCGRG	2 cut(s)	95, 119
BmgT120I	GGNCC	3 cut(s)	58, 242, 462
BmiI	GGNNCC	1 cut(s)	397
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	3 cut(s)	124, 159, 324
BpmI	CTGGAG	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	3 cut(s)	238, 301, 302
Bsc4I	CCNNNNNNNGG	5 cut(s)	224, 308, 391, 392, 459
Bse1I	ACTGG	2 cut(s)	374, 423
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	238, 301, 302
BseGI	GGATG	4 cut(s)	44, 174, 297, 339
BseLI	CCNNNNNNNGG	5 cut(s)	224, 308, 391, 392, 459
BseMI	GCAATG	1 cut(s)	337
BseNI	ACTGG	2 cut(s)	374, 423
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	87
BseYI	CCCAGC	2 cut(s)	22, 67
BshFI	GGCC	2 cut(s)	188, 373
BshNI	GGYRCC	1 cut(s)	395
BsiHKCI	CYCGRG	2 cut(s)	95, 119
BslI	CCNNNNNNNGG	5 cut(s)	224, 308, 391, 392, 459
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	2 cut(s)	188, 373
Bso31I	GGTCTC	1 cut(s)	443
BsoBI	CYCGRG	2 cut(s)	95, 119
Bsp143I	GATC	2 cut(s)	253, 364
Bsp19I	CCATGG	1 cut(s)	238
BspANI	GGCC	2 cut(s)	188, 373
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	397
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	374, 423
BssECI	CCNNGG	3 cut(s)	238, 301, 302
BssMI	GATC	2 cut(s)	253, 364
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	303
Bst6I	CTCTTC	2 cut(s)	192, 396
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	4 cut(s)	44, 174, 297, 339
BstKTI	GATC	2 cut(s)	256, 367
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	2 cut(s)	253, 364
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	188, 373
BtgI	CCRYGG	1 cut(s)	238
BtsCI	GGATG	4 cut(s)	44, 174, 297, 339
BtsIMutI	CAGTG	1 cut(s)	367
CciI	TCATGA	1 cut(s)	445
Cfr13I	GGNCC	3 cut(s)	58, 242, 462
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	4 cut(s)	28, 239, 285, 446
CviQI	GTAC	1 cut(s)	396
DpnI	GATC	2 cut(s)	255, 366
DpnII	GATC	2 cut(s)	253, 364
Eam1104I	CTCTTC	2 cut(s)	192, 396
EarI	CTCTTC	2 cut(s)	192, 396
Eco130I	CCWWGG	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	3 cut(s)	58, 242, 462
Eco88I	CYCGRG	2 cut(s)	95, 119
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	238
EcoT22I	ATGCAT	2 cut(s)	286, 339
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	4 cut(s)	31, 242, 288, 449
FaiI	YATR	6 cut(s)	29, 111, 240, 282, 286, 447
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	4 cut(s)	27, 238, 284, 445
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	4 cut(s)	31, 181, 284, 346
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
GsaI	CCCAGC	2 cut(s)	26, 71
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	188, 373
Hin1II	CATG	4 cut(s)	31, 242, 288, 449
HinfI	GANTC	1 cut(s)	228
HphI	GGTGA	2 cut(s)	42, 412
Hpy188III	TCNNGA	4 cut(s)	119, 409, 433, 446
HpyAV	CCTTC	2 cut(s)	168, 267
HpyCH4V	TGCA	3 cut(s)	284, 337, 342
Hsp92II	CATG	4 cut(s)	31, 242, 288, 449
KpnI	GGTACC	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	253, 364
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	3 cut(s)	124, 159, 324
MalI	GATC	2 cut(s)	255, 366
MboI	GATC	2 cut(s)	253, 364
MboII	GAAGA	5 cut(s)	173, 209, 217, 413, 434
MluCI	AATT	4 cut(s)	248, 312, 415, 436
MlyI	GAGTC	1 cut(s)	237
MnlI	CCTC	4 cut(s)	58, 225, 228, 405
Mph1103I	ATGCAT	2 cut(s)	286, 339
MseI	TTAA	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
NcoI	CCATGG	1 cut(s)	238
NdeII	GATC	2 cut(s)	253, 364
NlaIII	CATG	4 cut(s)	31, 242, 288, 449
NlaIV	GGNNCC	1 cut(s)	397
NsiI	ATGCAT	2 cut(s)	286, 339
PagI	TCATGA	1 cut(s)	445
PasI	CCCWGGG	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	102
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	2 cut(s)	22, 67
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	3 cut(s)	58, 242, 462
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	253, 364
Sau96I	GGNCC	3 cut(s)	58, 242, 462
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	3 cut(s)	63, 102, 268
SfaNI	GCATC	3 cut(s)	124, 159, 324
SinI	GGWCC	3 cut(s)	58, 242, 462
Sse9I	AATT	4 cut(s)	248, 312, 415, 436
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	238
TaqI	TCGA	3 cut(s)	80, 252, 432
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	4 cut(s)	248, 312, 415, 436
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	374
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	126, 434
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	374
VpaK11BI	GGWCC	3 cut(s)	58, 242, 462
XapI	RAATTY	2 cut(s)	248, 415
Zsp2I	ATGCAT	2 cut(s)	286, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.