Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010605

Physical Location & Seq

Genomic Coordinates Reverse (-)

12222333 .. 12241427

Gene Structure 19095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG082200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGTGGCATTTTGTATGTTTATGACATTTTGTATTGGACCATTTCATTAGTTTTATTAGATGGAGCTATCCCCGGTCTCACTTTGACAATTGAAGGAAACCTCCCTAAAGGTTTGAGAGGGTCAAGGATACAGAAATCTATCATTGTTGGGATCATAATCTCTGCACTCCCACCTGCAATGAACATAGGAACCATCACCAAATTGTTCGGAGCAGGAGAGAATGAGTGTTCAATAATCCTGCTGTGGACTAATGTATTTGCTTTAGTATCACCTACTTTATGGTCAGCCTTCTTCATGTGGTTTGTAGCCAGGTTCCAGGTTCAACCACATATCGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

113

Amino Acids

12.44

Weight (kDa)

7.91

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	39 - 95	4e-11	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010605)

Species	Orthologous Gene IDs
malus_domestica	MD05G1225700.v1.1 MD05G1225900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0350291 RchiOBHm_Chr3g0465941 RchiOBHm_Chr6g0256401 RchiOBHm_Chr7g0217151 RchiOBHm_Chr7g0219351
rosa_laevigata	RLG00000009798 RLG00000014784 RLG00000017295 RLG00000024613
rosa_roxburghii	Rroxscaffold_5G00337830 Rroxscaffold_6G00414880 Rroxscaffold_7G00190630
rosa_rugosa	Rorug01G0468500
rosa_samantha	Rh3BG145700 Rh3CG146800 Rh3DG235900 Rh6AG082200 Rh7AG228100 Rh7CG242600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	184
AclWI	GGATC	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	95, 234, 326
AjnI	CCWGG	2 cut(s)	311, 318
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	190, 264
AvaII	GGWCC	1 cut(s)	39
BccI	CCATC	2 cut(s)	56, 203
BciT130I	CCWGG	2 cut(s)	313, 320
BciVI	GTATCC	1 cut(s)	123
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	123
Bme1390I	CCNGG	3 cut(s)	75, 313, 320
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	193, 317
BmrFI	CCNGG	3 cut(s)	75, 313, 320
BpuMI	CCSGG	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	158
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	158
BseBI	CCWGG	2 cut(s)	313, 320
BseDI	CCNNGG	1 cut(s)	73
BseJI	GATNNNNATC	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	193, 317
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	313, 320
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	153
BstNI	CCWGG	2 cut(s)	313, 320
BstSCI	CCNGG	3 cut(s)	73, 311, 318
BsuI	GTATCC	1 cut(s)	123
BveI	ACCTGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	39
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	3 cut(s)	68, 290, 311
CviKI_1	RGCY	3 cut(s)	68, 290, 311
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	311, 318
FaeI	CATG	1 cut(s)	301
FaiI	YATR	7 cut(s)	18, 24, 158, 188, 283, 299, 333
FatI	CATG	1 cut(s)	297
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	1 cut(s)	301
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	190, 264
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	249
HpyAV	CCTTC	2 cut(s)	89, 301
HpyCH4V	TGCA	2 cut(s)	167, 179
Hsp92II	CATG	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	2 cut(s)	65, 212
LpnPI	CCDG	8 cut(s)	88, 189, 201, 254, 298, 305, 325, 332
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	1 cut(s)	286
MfeI	CAATTG	1 cut(s)	90
MluCI	AATT	2 cut(s)	90, 203
MnlI	CCTC	2 cut(s)	113, 113
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	3 cut(s)	75, 313, 320
MunI	CAATTG	1 cut(s)	90
MvaI	CCWGG	2 cut(s)	313, 320
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	2 cut(s)	193, 317
PaqCI	CACCTGC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	311, 318
PspGI	CCWGG	2 cut(s)	311, 318
PspN4I	GGNNCC	2 cut(s)	193, 317
PspPI	GGNCC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	39
ScrFI	CCNGG	3 cut(s)	75, 313, 320
SetI	ASST	7 cut(s)	70, 105, 115, 178, 277, 317, 324
SinI	GGWCC	1 cut(s)	39
Sse9I	AATT	2 cut(s)	90, 203
StyD4I	CCNGG	3 cut(s)	73, 311, 318
TasI	AATT	2 cut(s)	90, 203
TspDTI	ATGAA	3 cut(s)	36, 197, 286
VpaK11BI	GGWCC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.