RchiOBHm_Chr7g0217151

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010605
Physical Location & Seq
Forward (+)
35045454 .. 35047040
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19432

Sequence Viewer

Length: 528 bp
ATGTTTCAAATTCTAAATCTGAAAACGATATTTGCCCCTTCAACTATTGGAGCGATTGTTGGGTTTGCAATCGGAGTCATCCCTCAGATTCGTAAACTAATGATAGGAGATGGTGCTCCTCTAAGGGTGATCCATGGCACTACTAACTTGTTGGGAGATGGAGCTATCCCCGCTCTCACTTTGATAATTGGAGGAAACCTCCTTAAAGGTTTGAGAGGGTCAGGAATACAGAAATCTATTGTTGTTGGGATCATAATCGTTCGTTACGTGTTCCTGCCTCTTACAGGCATATTGATCATTAAAGGGGCGCTAAAATTTGGCCTGGTGCACTCTGATCCATTGTATCTTTTTGTTCTCCTTATTCAGTATACACTCCCACCTGCAATGAACATAGGAACGATCACCCAATTGTTCGGAGCCGGAGAGAACGAATGTTCAGTAATCCTGCTGTGGACTTATGTATTTGCAACAGCGTCACTTACTTTATGGTCTGCCTTCTTCATGTGGTTTGGGCCCAGGCAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

175

Amino Acids

18.84

Weight (kDa)

9.84

Isoelectric Point (pI)

17.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 3 - 163 1.6e-30 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 388
Acc36I ACCTGC 1 cut(s) 388
AccBSI CCGCTC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 368
AciI CCGC 1 cut(s) 171
AclWI GGATC 3 cut(s) 124, 257, 329
AcsI RAATTY 2 cut(s) 9, 314
AfiI CCNNNNNNNGG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 2 cut(s) 8, 42
AjnI CCWGG 2 cut(s) 321, 515
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 2 cut(s) 118, 330
Alw44I GTGCAC 1 cut(s) 326
AlwI GGATC 3 cut(s) 124, 257, 329
AoxI GGCC 2 cut(s) 319, 512
ApaI GGGCCC 1 cut(s) 516
ApaLI GTGCAC 1 cut(s) 326
ApoI RAATTY 2 cut(s) 9, 314
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 2 cut(s) 512, 513
AsuHPI GGTGA 2 cut(s) 139, 394
BaeGI GKGCMC 2 cut(s) 330, 516
BanII GRGCYC 1 cut(s) 516
Bbv12I GWGCWC 2 cut(s) 118, 330
BccI CCATC 2 cut(s) 104, 152
BciT130I CCWGG 2 cut(s) 323, 517
BclI TGATCA 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 388
Bme1390I CCNGG 2 cut(s) 323, 517
BmgT120I GGNCC 2 cut(s) 512, 513
BmiI GGNNCC 2 cut(s) 418, 514
BmrFI CCNGG 2 cut(s) 323, 517
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BsaAI YACGTR 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 133, 515
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 254
BseBI CCWGG 2 cut(s) 323, 517
BseDI CCNNGG 2 cut(s) 133, 515
BseGI GGATG 1 cut(s) 78
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 108
BseSI GKGCMC 2 cut(s) 330, 516
BshFI GGCC 2 cut(s) 321, 514
BsiHKAI GWGCWC 2 cut(s) 118, 330
BsiSI CCGG 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 284
BsnI GGCC 2 cut(s) 321, 514
Bsp120I GGGCCC 1 cut(s) 512
Bsp1286I GDGCHC 3 cut(s) 118, 330, 516
Bsp143I GATC 5 cut(s) 129, 249, 294, 334, 399
Bsp19I CCATGG 1 cut(s) 133
BspACI CCGC 1 cut(s) 171
BspANI GGCC 2 cut(s) 321, 514
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 418, 514
BspMI ACCTGC 1 cut(s) 388
BspPI GGATC 3 cut(s) 124, 257, 329
BsrBI CCGCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 390
BssECI CCNNGG 2 cut(s) 133, 515
BssMI GATC 5 cut(s) 129, 249, 294, 334, 399
BssNAI GTATAC 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 133
Bst1107I GTATAC 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 323, 517
BstBAI YACGTR 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 84, 122
BstDSI CCRYGG 1 cut(s) 133
BstENI CCTNNNNNAGG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 5 cut(s) 132, 252, 297, 337, 402
BstMBI GATC 5 cut(s) 129, 249, 294, 334, 399
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 2 cut(s) 323, 517
BstSCI CCNGG 2 cut(s) 321, 515
BstSLI GKGCMC 2 cut(s) 330, 516
BstZ17I GTATAC 1 cut(s) 369
BsuRI GGCC 2 cut(s) 321, 514
BtgI CCRYGG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 78
BveI ACCTGC 1 cut(s) 388
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 512, 513
CseI GACGC 1 cut(s) 462
CviAII CATG 2 cut(s) 134, 502
CviJI RGCY 4 cut(s) 164, 321, 419, 514
CviKI_1 RGCY 4 cut(s) 164, 321, 419, 514
DdeI CTNAG 2 cut(s) 84, 122
DpnI GATC 5 cut(s) 131, 251, 296, 336, 401
DpnII GATC 5 cut(s) 129, 249, 294, 334, 399
Eco130I CCWWGG 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 516
EcoNI CCTNNNNNAGG 1 cut(s) 282
EcoRII CCWGG 2 cut(s) 321, 515
EcoT14I CCWWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 2 cut(s) 137, 505
FaiI YATR 8 cut(s) 135, 254, 290, 369, 392, 459, 487, 503
FatI CATG 2 cut(s) 133, 501
FauI CCCGC 1 cut(s) 178
FbaI TGATCA 1 cut(s) 294
FblI GTMKAC 1 cut(s) 368
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 516
GlaI GCGC 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 2 cut(s) 321, 514
HapII CCGG 1 cut(s) 420
HgaI GACGC 1 cut(s) 462
HhaI GCGC 1 cut(s) 310
Hin1II CATG 2 cut(s) 137, 505
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HinfI GANTC 2 cut(s) 75, 88
HpaII CCGG 1 cut(s) 420
HphI GGTGA 2 cut(s) 139, 394
Hpy166II GTNNAC 4 cut(s) 95, 328, 369, 453
Hpy188I TCNGA 5 cut(s) 21, 74, 87, 334, 416
Hpy188III TCNNGA 1 cut(s) 222
Hpy8I GTNNAC 4 cut(s) 95, 328, 369, 453
HpyAV CCTTC 2 cut(s) 48, 505
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 4 cut(s) 68, 328, 383, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 84, 122
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 2 cut(s) 137, 505
HspAI GCGC 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 5 cut(s) 129, 249, 294, 334, 399
LmnI GCTCC 4 cut(s) 50, 121, 161, 416
LpnPI CCDG 9 cut(s) 207, 270, 287, 308, 335, 393, 433, 458, 502
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 2 cut(s) 263, 474
MalI GATC 5 cut(s) 131, 251, 296, 336, 401
MbiI CCGCTC 1 cut(s) 173
MboI GATC 5 cut(s) 129, 249, 294, 334, 399
MboII GAAGA 1 cut(s) 490
MfeI CAATTG 1 cut(s) 407
MhlI GDGCHC 3 cut(s) 118, 330, 516
MluCI AATT 4 cut(s) 9, 186, 314, 407
MlyI GAGTC 1 cut(s) 84
MnlI CCTC 6 cut(s) 93, 129, 185, 209, 209, 288
MseI TTAA 2 cut(s) 204, 300
MspI CCGG 1 cut(s) 420
MspR9I CCNGG 2 cut(s) 323, 517
MunI CAATTG 1 cut(s) 407
MvaI CCWGG 2 cut(s) 323, 517
MwoI GCNNNNNNNGC 1 cut(s) 170
NcoI CCATGG 1 cut(s) 133
NdeII GATC 5 cut(s) 129, 249, 294, 334, 399
NlaIII CATG 2 cut(s) 137, 505
NlaIV GGNNCC 2 cut(s) 418, 514
NmuCI GTSAC 1 cut(s) 474
PaqCI CACCTGC 1 cut(s) 388
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 1 cut(s) 88
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Ppu21I YACGTR 1 cut(s) 268
Psp6I CCWGG 2 cut(s) 321, 515
PspGI CCWGG 2 cut(s) 321, 515
PspN4I GGNNCC 2 cut(s) 418, 514
PspOMI GGGCCC 1 cut(s) 512
PspPI GGNCC 2 cut(s) 512, 513
SaqAI TTAA 2 cut(s) 204, 300
Sau3AI GATC 5 cut(s) 129, 249, 294, 334, 399
Sau96I GGNCC 2 cut(s) 512, 513
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 2 cut(s) 323, 517
SduI GDGCHC 3 cut(s) 118, 330, 516
SetI ASST 5 cut(s) 166, 201, 211, 270, 382
Sse9I AATT 4 cut(s) 9, 186, 314, 407
SsiI CCGC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 321, 515
StyI CCWWGG 1 cut(s) 133
TaiI ACGT 1 cut(s) 270
TasI AATT 4 cut(s) 9, 186, 314, 407
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 2 cut(s) 204, 300
Tru9I TTAA 2 cut(s) 204, 300
TseFI GTSAC 1 cut(s) 474
Tsp45I GTSAC 1 cut(s) 474
TspDTI ATGAA 2 cut(s) 401, 490
VneI GTGCAC 1 cut(s) 326
XagI CCTNNNNNAGG 1 cut(s) 282
XapI RAATTY 2 cut(s) 9, 314
XmiI GTMKAC 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.