Rh3CG146800

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0010605
Physical Location & Seq
Reverse (-)
12184313 .. 12189040
4728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG146800.1

Sequence Viewer

Length: 309 bp
ATGGCGGCGTCGCTGCCGGTGGGCATTCCGGACTGGTCTAAGATCATGAGGAACGAGTACCGAGAAAACCGACGGAGGGACGATGACGAGTTCTTCAACGGGAGCATTTATAGCGGGTTTTGGAAGTTTGATGCTTGGTTGATTTGTGTAGTGGGAAAGATTAGAGATGGAGCTATCCCCGGTCTCACTTTGACAATTGAAGGAAAACTCCCTAAAGGGTATGCAATGCCAATTATATACCAAAGTCTACATTTCCCAGATTCATGCTTAAGGAACCATCACCCAGTTGTTCGGAGCAGGAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

102

Amino Acids

11.82

Weight (kDa)

9.06

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 247
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 2 cut(s) 5, 114
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 76
AflII CTTAAG 1 cut(s) 268
AgsI TTSAA 2 cut(s) 97, 200
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 13
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 272
BccI CCATC 2 cut(s) 161, 285
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 188
BfrI CTTAAG 1 cut(s) 268
BisI GCNGC 2 cut(s) 6, 14
BlsI GCNGC 2 cut(s) 7, 15
Bme1390I CCNGG 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 180
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 38, 284
Bse3DI GCAATG 1 cut(s) 231
BseAI TCCGGA 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 2 cut(s) 38, 284
BsiSI CCGG 3 cut(s) 17, 29, 180
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 24
Bso31I GGTCTC 1 cut(s) 188
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 2 cut(s) 5, 114
BspEI TCCGGA 1 cut(s) 28
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 275
BspTI CTTAAG 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 2 cut(s) 38, 284
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 1 cut(s) 42
BssNI GRCGYC 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 8
BstAFI CTTAAG 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 39
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 178
CciI TCATGA 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 16
Csp6I GTAC 1 cut(s) 58
CviAII CATG 2 cut(s) 46, 264
CviJI RGCY 1 cut(s) 173
CviKI_1 RGCY 1 cut(s) 173
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 188
FaeI CATG 2 cut(s) 49, 267
FaiI YATR 6 cut(s) 47, 111, 222, 236, 238, 265
FaqI GGGAC 1 cut(s) 92
FatI CATG 2 cut(s) 45, 263
FauI CCCGC 1 cut(s) 107
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 6, 14
Fsp4HI GCNGC 2 cut(s) 6, 14
GluI GCNGC 2 cut(s) 6, 14
HapII CCGG 3 cut(s) 17, 29, 180
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 2 cut(s) 49, 267
HinfI GANTC 1 cut(s) 260
HpaII CCGG 3 cut(s) 17, 29, 180
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 2 cut(s) 29, 46
Hpy8I GTNNAC 1 cut(s) 248
Hpy99I CGWCG 2 cut(s) 13, 75
HpyAV CCTTC 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpyF3I CTNAG 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 2 cut(s) 49, 267
Kpn2I TCCGGA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 3 cut(s) 102, 170, 294
LpnPI CCDG 7 cut(s) 19, 30, 42, 193, 270, 283, 297
LweI GCATC 1 cut(s) 121
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 1 cut(s) 85
MfeI CAATTG 1 cut(s) 195
MluCI AATT 2 cut(s) 195, 231
MnlI CCTC 2 cut(s) 42, 69
MroI TCCGGA 1 cut(s) 28
MseI TTAA 1 cut(s) 269
MspCI CTTAAG 1 cut(s) 268
MspI CCGG 3 cut(s) 17, 29, 180
MspR9I CCNGG 1 cut(s) 180
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 111
NciI CCSGG 1 cut(s) 180
NdeII GATC 1 cut(s) 42
NlaIII CATG 2 cut(s) 49, 267
NlaIV GGNNCC 1 cut(s) 275
PagI TCATGA 1 cut(s) 45
PctI GAATGC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 7, 15
PspN4I GGNNCC 1 cut(s) 275
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 2 cut(s) 6, 14
Sau3AI GATC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 180
SetI ASST 1 cut(s) 175
SfaNI GCATC 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 2 cut(s) 195, 231
SsiI CCGC 2 cut(s) 5, 114
StyD4I CCNGG 1 cut(s) 178
TasI AATT 2 cut(s) 195, 231
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 252
TspGWI ACGGA 1 cut(s) 88
Vha464I CTTAAG 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.