Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010605

Physical Location & Seq

Genomic Coordinates Forward (+)

21587360 .. 21592469

Gene Structure 5110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG228100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTCTGCCTTCTTCATGCCGTTTGTGGCCAGGCAAGTGTGAAACAGCTACAAAGAACAGTGGGAGTGGATTGCTATAAGGAGTGCCTACAATACGAAAGCAAGCATTCAAACCTGCAGCAAGCAAACAATATAGCGGCATCATTGGTCAAGCAAACATTGGCCACTGCAAATGTTAAAGAGTTTCGTGGCTACACACGTGCTGGATCTGCTTCATTAGATACATCCAGTCAGGTTCACCCATTAAAATTATGCGCACAACCCACGAAGCAGAGTCAGAATCTGGCTTTTCGAGCAAATCCAAAGAGAGCTATAAATGAGCACAACAAGAATGAGGCTGGAAATGCATGTGTCCAGCATAAAAGGGGGGCAGCGCTTCAGGATGCAACCAATGCTTTTTGTAAACCTTCATATGGGGACTGCTTCAATGCAACTAAACTTCAGAAGTACCGGAGCAAGCTAACAAAGCCGCGGCAATGTGCGGGCTATCTCGCTAGTGCAATACTAAATATGAGGATACAGACCACAAACAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0007346 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010374 GO:0010389 GO:0010440 GO:0010444 GO:0010564 GO:0022402 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051726 GO:0065007 GO:0071704 GO:0090304 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1901576 GO:1901987 GO:1901990 GO:1902749 GO:1905392 GO:1905393 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

179

Amino Acids

19.69

Weight (kDa)

9.64

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010605)

Species	Orthologous Gene IDs
malus_domestica	MD05G1225700.v1.1 MD05G1225900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0350291 RchiOBHm_Chr3g0465941 RchiOBHm_Chr6g0256401 RchiOBHm_Chr7g0217151 RchiOBHm_Chr7g0219351
rosa_laevigata	RLG00000009798 RLG00000014784 RLG00000017295 RLG00000024613
rosa_roxburghii	Rroxscaffold_5G00337830 Rroxscaffold_6G00414880 Rroxscaffold_7G00190630
rosa_rugosa	Rorug01G0468500
rosa_samantha	Rh3BG145700 Rh3CG146800 Rh3DG235900 Rh6AG082200 Rh7AG228100 Rh7CG242600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	256
Acc36I	ACCTGC	1 cut(s)	123
AccII	CGCG	1 cut(s)	472
AciI	CCGC	4 cut(s)	137, 470, 472, 482
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	2 cut(s)	28, 162
AcuI	CTGAAG	2 cut(s)	362, 425
AcvI	CACGTG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	449
AfeI	AGCGCT	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	413
AflIII	ACRYGT	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	111, 427
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	3 cut(s)	49, 311, 460
AluI	AGCT	3 cut(s)	49, 311, 460
Alw21I	GWGCWC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	214
AlwNI	CAGNNNCTG	1 cut(s)	283
Aor51HI	AGCGCT	1 cut(s)	375
AoxI	GGCC	2 cut(s)	28, 162
ApeKI	GCWGC	2 cut(s)	118, 371
AspLEI	GCGC	2 cut(s)	257, 376
AsuHPI	GGTGA	1 cut(s)	230
BalI	TGGCCA	2 cut(s)	30, 164
BbrPI	CACGTG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	130, 383
BceAI	ACGGC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	510
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	510
BisI	GCNGC	5 cut(s)	119, 138, 372, 470, 473
BlsI	GCNGC	5 cut(s)	120, 139, 373, 471, 474
Bme1390I	CCNGG	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	2 cut(s)	149, 373
BsaAI	YACGTR	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	470
BsaWI	WCCGGW	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	2 cut(s)	224, 388
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	482
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	130, 383
Bsh1236I	CGCG	1 cut(s)	472
BshFI	GGCC	2 cut(s)	30, 164
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	451
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	431
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	30, 164
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	206
BspACI	CCGC	4 cut(s)	137, 470, 472, 482
BspANI	GGCC	2 cut(s)	30, 164
BspFNI	CGCG	1 cut(s)	472
BspMAI	CTGCAG	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	482
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	61
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	4 cut(s)	104, 123, 458, 484
BstDSI	CCRYGG	1 cut(s)	470
BstF5I	GGATG	2 cut(s)	224, 388
BstFNI	CGCG	1 cut(s)	472
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	2 cut(s)	257, 376
BstKTI	GATC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 293, 344, 392, 466
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	116
BstUI	CGCG	1 cut(s)	472
BstV1I	GCAGC	2 cut(s)	130, 383
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	30, 164
BtgI	CCRYGG	1 cut(s)	470
BtsCI	GGATG	2 cut(s)	224, 388
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	66, 165
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	4 cut(s)	104, 123, 458, 484
CaiI	CAGNNNCTG	1 cut(s)	283
CfoI	GCGC	2 cut(s)	257, 376
Cfr42I	CCGCGG	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	2 cut(s)	17, 348
CviQI	GTAC	1 cut(s)	448
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
EaeI	YGGCCR	2 cut(s)	28, 162
Eco47III	AGCGCT	1 cut(s)	375
Eco57I	CTGAAG	2 cut(s)	362, 425
Eco72I	CACGTG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	349
FaeI	CATG	2 cut(s)	20, 351
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	2 cut(s)	16, 347
FauI	CCCGC	1 cut(s)	475
FauNDI	CATATG	1 cut(s)	412
Fnu4HI	GCNGC	5 cut(s)	119, 138, 372, 470, 473
FokI	GGATG	2 cut(s)	211, 395
Fsp4HI	GCNGC	5 cut(s)	119, 138, 372, 470, 473
FspAI	RTGCGCAY	1 cut(s)	256
FspBI	CTAG	1 cut(s)	495
FspI	TGCGCA	1 cut(s)	256
GlaI	GCGC	2 cut(s)	256, 375
GluI	GCNGC	5 cut(s)	119, 138, 372, 470, 473
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	30, 164
HapII	CCGG	1 cut(s)	451
HhaI	GCGC	2 cut(s)	257, 376
Hin1II	CATG	2 cut(s)	20, 351
Hin6I	GCGC	2 cut(s)	255, 374
HinP1I	GCGC	2 cut(s)	255, 374
HinfI	GANTC	2 cut(s)	274, 280
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	2 cut(s)	238, 404
Hpy188I	TCNGA	2 cut(s)	279, 444
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	2 cut(s)	238, 404
HpyAV	CCTTC	2 cut(s)	20, 417
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	6 cut(s)	118, 170, 347, 386, 431, 500
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 293, 344, 392, 466
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	2 cut(s)	20, 351
HspAI	GCGC	2 cut(s)	255, 374
KspI	CCGCGG	1 cut(s)	473
Kzo9I	GATC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	453
Lsp1109I	GCAGC	2 cut(s)	130, 383
LweI	GCATC	2 cut(s)	149, 373
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	199
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MboII	GAAGA	1 cut(s)	5
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	324
MlsI	TGGCCA	2 cut(s)	30, 164
MluCI	AATT	1 cut(s)	248
MluNI	TGGCCA	2 cut(s)	30, 164
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	2 cut(s)	328, 507
Mox20I	TGGCCA	2 cut(s)	30, 164
Mph1103I	ATGCAT	1 cut(s)	349
MscI	TGGCCA	2 cut(s)	30, 164
MseI	TTAA	2 cut(s)	177, 245
Msp20I	TGGCCA	2 cut(s)	30, 164
MspA1I	CMGCKG	1 cut(s)	472
MspI	CCGG	1 cut(s)	451
MspR9I	CCNGG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	472
MwoI	GCNNNNNNNGC	5 cut(s)	209, 293, 344, 392, 466
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	1 cut(s)	206
NlaIII	CATG	2 cut(s)	20, 351
NsbI	TGCGCA	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	1 cut(s)	351
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	5 cut(s)	120, 139, 373, 471, 474
PleI	GAGTC	1 cut(s)	282
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	282
Ppu21I	YACGTR	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	30
PspCI	CACGTG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SacII	CCGCGG	1 cut(s)	473
SaqAI	TTAA	2 cut(s)	177, 245
SatI	GCNGC	5 cut(s)	119, 138, 372, 470, 473
Sau3AI	GATC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	7 cut(s)	51, 117, 202, 237, 313, 409, 462
SfaNI	GCATC	2 cut(s)	149, 373
SfcI	CTRYAG	1 cut(s)	116
Sfr303I	CCGCGG	1 cut(s)	473
SgrBI	CCGCGG	1 cut(s)	473
Sse9I	AATT	1 cut(s)	248
SsiI	CCGC	4 cut(s)	137, 470, 472, 482
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	292
TasI	AATT	1 cut(s)	248
TauI	GCSGC	3 cut(s)	140, 472, 475
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	177, 245
Tru9I	TTAA	2 cut(s)	177, 245
TscAI	CASTG	2 cut(s)	66, 172
TseI	GCWGC	2 cut(s)	118, 371
TspDTI	ATGAA	3 cut(s)	5, 204, 399
TspRI	CASTG	2 cut(s)	66, 172
XceI	RCATGY	1 cut(s)	351
XspI	CTAG	1 cut(s)	495
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.