MD05G1272600.v1.1

WPP domain-associated

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
40774573 .. 40775486
914 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1272600.v1.1.491

Sequence Viewer

Length: 276 bp
ATGGAGAGACTGGAATTACTCATTTCAGAAAACCGCCACCTCAGAGATTTGCTTGCAAATAAGAATAGGGAAGTTCAGTGTCTTTCACTTCAAGTTTCTGAAGCTGCTGAGAAAATGAAAGAGTTGTGCGAAGAGAGGAGAATGCTTCTTGGTGCTAACCAAGAGAAGTATAATGTTTTTTCTTTGTTTGAAGCAAAAGAAAGGGAGCACAAGCAACAATTGGAATCAATGGCTGTGAATATTCGTGAAATATTGGATCGTATTCAGTTCTTATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.89

Weight (kDa)

5.74

Isoelectric Point (pI)

56.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 274
AciI CCGC 1 cut(s) 34
AclWI GGATC 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 120
AgsI TTSAA 2 cut(s) 92, 191
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 1 cut(s) 264
ApeKI GCWGC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 91
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 55, 99
BseNI ACTGG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 210
BsmI GAATGC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 1 cut(s) 34
BspCNI CTCAG 2 cut(s) 54, 100
BspPI GGATC 1 cut(s) 264
BsrI ACTGG 1 cut(s) 15
BssMI GATC 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 41, 108
BstKTI GATC 1 cut(s) 259
BstMBI GATC 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 54
CviJI RGCY 2 cut(s) 104, 233
CviKI_1 RGCY 2 cut(s) 104, 233
DdeI CTNAG 2 cut(s) 41, 108
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 120
FaiI YATR 2 cut(s) 171, 274
Fnu4HI GCNGC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 105
HinfI GANTC 1 cut(s) 224
Hpy188I TCNGA 3 cut(s) 28, 44, 100
Hpy188III TCNNGA 1 cut(s) 245
HpyCH4V TGCA 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 41, 108
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 1 cut(s) 91
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 1 cut(s) 143
MfeI CAATTG 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 2 cut(s) 14, 218
MnlI CCTC 2 cut(s) 50, 129
MunI CAATTG 1 cut(s) 218
Mva1269I GAATGC 1 cut(s) 147
NdeII GATC 1 cut(s) 256
PctI GAATGC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 106
PsiI TTATAA 1 cut(s) 274
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 210
SetI ASST 2 cut(s) 42, 106
SgeI CNNG 7 cut(s) 23, 65, 104, 161, 173, 223, 257
Sse9I AATT 2 cut(s) 14, 218
SsiI CCGC 1 cut(s) 34
SspI AATATT 2 cut(s) 241, 252
TasI AATT 2 cut(s) 14, 218
TfiI GAWTC 1 cut(s) 224
TscAI CASTG 1 cut(s) 83
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.