Rmu_sc0007230.1_g000007

WPP domain-associated

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007230.1
Physical Location & Seq
Forward (+)
35916 .. 38448
2533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007230.1_g000007.1.cds

Sequence Viewer

Length: 1545 bp
atggaagatgcgcatattgaagctttaattggtgaagatttattttctggtattgtctgggaagtggtggatgagattaaatgcattcctgaagagtcacaggtggagaatagtactaagcatgaaatttacaaaagcaaattcaaagaagcttctcatgaagctgaacttgctaccaaacgtgaattggaagatttggatacggagtccatcatcacgcaagaagtatgtggtgttatattcaaaggcgctttgaagaatgcagaggagaaactcaatgagctgaacattaaatatattgaggaatatgaacatcgggttttgcaggagatggacaaacgagaaaaggaaaaacaattagaagtggaggttgcaaacaaagtgagattacagcaagaagtactttttctgggagaagaaagggagcagttggcacgagatgcagcagttgcattggcaaacgaaaaagaaagatatgaattagctgctcaagaggttgaaaatttaaggggtgagacttgtcaacatcagaaattgatttcagaaagcgttgaagtgtcaaatgctgcaaagagtgatttggttgaggcgttggagcaaaatgaaagacacagggcagacatatgtgtgttagaacaaaagcttggagcagcagtgaaagagttgaggcaagctgaggaagatttctatcaacagaagcagattgctgtatcattgttcgaagcaaaagaaagggagcttagcgagaaatttgaatcaatagctgtctatgtccgtgaattattgaaagcgttcactgattttgaatgtagagtgacacgagatatttcagagaaatgttcgaggttgaaaagtttgacttctcaatcacatttgcttaaacaaaaagctgatgtacttgtaagacgaggattgctgtacaagcaaagactggacaagaaatgttctgaccttgagaaagctgaaactgagataaactcgcctcacaccccaacctactcctccatcacctcccctaccccaaaccccattttaccaccatcatctgatgaccccttgcctctcccgcccactgtggttctcagtatttcatcttacttggagcgcctgcgtttaaagagatcggtgattgagactgtggttaatgaggatcgagtttctaaacgcccccggcgttctgctcgaatcgctccacctgctcagagttcgcaccctactgcttttcctcctcaacaagaagaacttggagacccacctgttccaattcgacaagcagagcatggagttccgcccactcctctggtccgtcgcactcgtcgacctcgacaacccggcggttcacgggcttctacttcggccccccgtgctcggggtggccgaggccgcgggtctcgagcacgccaagcaacggtcacagtgacaacccctgaaactgttgttgctggaattgaggttgcttctattgaggatcttcttgcgactcaacttcaactatctgagatcattcaggccctacccatcagcttccccagttccggagtttaa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

514

Amino Acids

57.84

Weight (kDa)

5.48

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1204
Acc16I TGCGCA 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 1204
AccI GTMKAC 1 cut(s) 1318
AccII CGCG 1 cut(s) 1386
AccIII TCCGGA 1 cut(s) 1535
AciI CCGC 5 cut(s) 1067, 1289, 1335, 1384, 1386
AclWI GGATC 2 cut(s) 1158, 1476
AcoI YGGCCR 1 cut(s) 1375
AcsI RAATTY 4 cut(s) 126, 140, 502, 749
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 4 cut(s) 115, 402, 897, 920
AfiI CCNNNNNNNGG 4 cut(s) 1368, 1369, 1408, 1535
AjuI GAANNNNNNNTTGG 4 cut(s) 12, 44, 627, 659
Alw21I GWGCWC 2 cut(s) 1369, 1399
Alw26I GTCTC 4 cut(s) 509, 1127, 1242, 1395
AlwI GGATC 2 cut(s) 1158, 1476
Ama87I CYCGRG 2 cut(s) 1368, 1392
Aor13HI TCCGGA 1 cut(s) 1535
AoxI GGCC 4 cut(s) 1356, 1375, 1381, 1509
ApeKI GCWGC 4 cut(s) 443, 485, 566, 650
ApoI RAATTY 4 cut(s) 126, 140, 502, 749
Asp700I GAANNNNTTC 1 cut(s) 791
AspLEI GCGC 3 cut(s) 13, 251, 1107
AspS9I GGNCC 3 cut(s) 1303, 1357, 1510
AsuC2I CCSGG 2 cut(s) 1171, 1332
AsuHPI GGTGA 4 cut(s) 44, 524, 1000, 1138
AsuII TTCGAA 1 cut(s) 720
AvaI CYCGRG 2 cut(s) 1368, 1392
AvaII GGWCC 1 cut(s) 1303
BauI CACGAG 2 cut(s) 435, 819
Bbv12I GWGCWC 2 cut(s) 1369, 1399
BbvCI CCTCAGC 1 cut(s) 675
BbvI GCAGC 4 cut(s) 455, 472, 553, 662
BccI CCATC 5 cut(s) 218, 325, 1013, 1048, 1526
BciVI GTATCC 1 cut(s) 193
BcnI CCSGG 2 cut(s) 1171, 1332
BcoDI GTCTC 4 cut(s) 509, 1127, 1242, 1395
BfoI RGCGCY 2 cut(s) 252, 1108
BfuAI ACCTGC 1 cut(s) 1204
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 5 cut(s) 444, 486, 567, 651, 1384
BlpI GCTNAGC 1 cut(s) 740
BlsI GCNGC 5 cut(s) 445, 487, 568, 652, 1385
BmcAI AGTACT 2 cut(s) 115, 402
Bme1390I CCNGG 2 cut(s) 1171, 1332
Bme18I GGWCC 1 cut(s) 1303
BmeT110I CYCGRG 2 cut(s) 1368, 1392
BmgT120I GGNCC 3 cut(s) 1303, 1357, 1510
BmiI GGNNCC 1 cut(s) 1359
BmrFI CCNGG 2 cut(s) 1171, 1332
BmrI ACTGGG 1 cut(s) 1524
BmsI GCATC 1 cut(s) 430
BmuI ACTGGG 1 cut(s) 1524
BplI GAGNNNNNCTC 2 cut(s) 962, 994
Bpu10I CCTNAGC 1 cut(s) 675
Bpu1102I GCTNAGC 1 cut(s) 740
Bpu14I TTCGAA 1 cut(s) 720
BpuEI CTTGAG 2 cut(s) 474, 974
BpuMI CCSGG 2 cut(s) 1171, 1332
BsaBI GATNNNNATC 1 cut(s) 687
BsaI GGTCTC 2 cut(s) 1242, 1395
BsaJI CCNNGG 3 cut(s) 1169, 1378, 1384
BsaWI WCCGGW 1 cut(s) 1535
BsaXI ACNNNNNCTCC 2 cut(s) 639, 669
Bsc4I CCNNNNNNNGG 4 cut(s) 1368, 1369, 1408, 1535
Bse1I ACTGG 2 cut(s) 936, 1530
Bse8I GATNNNNATC 1 cut(s) 687
BseAI TCCGGA 1 cut(s) 1535
BseDI CCNNGG 3 cut(s) 1169, 1378, 1384
BseGI GGATG 1 cut(s) 76
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 4 cut(s) 1368, 1369, 1408, 1535
BseMII CTCAG 5 cut(s) 666, 960, 1096, 1214, 1488
BseNI ACTGG 2 cut(s) 936, 1530
BseRI GAGGAG 4 cut(s) 281, 991, 1218, 1287
BseXI GCAGC 4 cut(s) 455, 472, 553, 662
Bsh1236I CGCG 1 cut(s) 1386
BshFI GGCC 4 cut(s) 1358, 1377, 1383, 1511
BsiHKAI GWGCWC 2 cut(s) 1369, 1399
BsiHKCI CYCGRG 2 cut(s) 1368, 1392
BsiSI CCGG 3 cut(s) 1171, 1332, 1536
BslI CCNNNNNNNGG 4 cut(s) 1368, 1369, 1408, 1535
BsmAI GTCTC 4 cut(s) 509, 1127, 1242, 1395
BsmI GAATGC 2 cut(s) 84, 265
BsnI GGCC 4 cut(s) 1358, 1377, 1383, 1511
Bso31I GGTCTC 2 cut(s) 1242, 1395
BsoBI CYCGRG 2 cut(s) 1368, 1392
Bsp119I TTCGAA 1 cut(s) 720
Bsp1286I GDGCHC 2 cut(s) 1369, 1399
Bsp13I TCCGGA 1 cut(s) 1535
Bsp1407I TGTACA 1 cut(s) 918
Bsp143I GATC 4 cut(s) 1121, 1150, 1468, 1500
Bsp1720I GCTNAGC 1 cut(s) 740
BspACI CCGC 5 cut(s) 1067, 1289, 1335, 1384, 1386
BspANI GGCC 4 cut(s) 1358, 1377, 1383, 1511
BspCNI CTCAG 5 cut(s) 667, 961, 1095, 1213, 1489
BspEI TCCGGA 1 cut(s) 1535
BspFNI CGCG 1 cut(s) 1386
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 1359
BspMI ACCTGC 1 cut(s) 1204
BspPI GGATC 2 cut(s) 1158, 1476
BspT104I TTCGAA 1 cut(s) 720
BspTNI GGTCTC 2 cut(s) 1242, 1395
BsrGI TGTACA 1 cut(s) 918
BsrI ACTGG 2 cut(s) 936, 1530
BssECI CCNNGG 3 cut(s) 1169, 1378, 1384
BssMI GATC 4 cut(s) 1121, 1150, 1468, 1500
BssSI CACGAG 2 cut(s) 435, 819
Bst2BI CACGAG 2 cut(s) 435, 819
Bst4CI ACNGT 5 cut(s) 1075, 1138, 1411, 1417, 1435
Bst6I CTCTTC 1 cut(s) 87
BstAPI GCANNNNNTGC 2 cut(s) 440, 449
BstAUI TGTACA 1 cut(s) 918
BstBI TTCGAA 1 cut(s) 720
BstC8I GCNNGC 3 cut(s) 672, 1109, 1399
BstDEI CTNAG 7 cut(s) 117, 675, 740, 969, 1082, 1200, 1497
BstDSI CCRYGG 1 cut(s) 1384
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 1386
BstH2I RGCGCY 2 cut(s) 252, 1108
BstHHI GCGC 3 cut(s) 13, 251, 1107
BstKTI GATC 4 cut(s) 1124, 1153, 1471, 1503
BstMAI GTCTC 4 cut(s) 509, 1127, 1242, 1395
BstMBI GATC 4 cut(s) 1121, 1150, 1468, 1500
BstSCI CCNGG 2 cut(s) 1169, 1330
BstUI CGCG 1 cut(s) 1386
BstV1I GCAGC 4 cut(s) 455, 472, 553, 662
BstX2I RGATCY 1 cut(s) 1468
BstXI CCANNNNNNTGG 1 cut(s) 1300
BstYI RGATCY 1 cut(s) 1468
BsuI GTATCC 1 cut(s) 193
BsuRI GGCC 4 cut(s) 1358, 1377, 1383, 1511
BtgI CCRYGG 1 cut(s) 1384
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 4 cut(s) 660, 795, 1071, 1422
BveI ACCTGC 1 cut(s) 1204
Cac8I GCNNGC 3 cut(s) 672, 1109, 1399
CciI TCATGA 1 cut(s) 157
CfoI GCGC 3 cut(s) 13, 251, 1107
Cfr13I GGNCC 3 cut(s) 1303, 1357, 1510
Cfr42I CCGCGG 1 cut(s) 1387
Csp6I GTAC 4 cut(s) 114, 401, 896, 919
CviAII CATG 3 cut(s) 122, 158, 1280
CviQI GTAC 4 cut(s) 114, 401, 896, 919
DdeI CTNAG 7 cut(s) 117, 675, 740, 969, 1082, 1200, 1497
DpnI GATC 4 cut(s) 1123, 1152, 1470, 1502
DpnII GATC 4 cut(s) 1121, 1150, 1468, 1500
DraI TTTAAA 1 cut(s) 1116
EaeI YGGCCR 1 cut(s) 1375
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EciI GGCGGA 1 cut(s) 1278
Eco31I GGTCTC 2 cut(s) 1242, 1395
Eco47I GGWCC 1 cut(s) 1303
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 2 cut(s) 1368, 1392
EcoO109I RGGNCCY 1 cut(s) 1510
EcoT22I ATGCAT 1 cut(s) 86
FaeI CATG 3 cut(s) 125, 161, 1283
FalI AAGNNNNNCTT 8 cut(s) 153, 185, 387, 419, 844, 876, 1227, 1259
FatI CATG 3 cut(s) 121, 157, 1279
FauI CCCGC 2 cut(s) 1074, 1379
FauNDI CATATG 1 cut(s) 623
FblI GTMKAC 1 cut(s) 1318
Fnu4HI GCNGC 5 cut(s) 444, 486, 567, 651, 1384
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 5 cut(s) 444, 486, 567, 651, 1384
FspAI RTGCGCAY 1 cut(s) 12
FspI TGCGCA 1 cut(s) 12
GlaI GCGC 3 cut(s) 12, 250, 1106
GluI GCNGC 5 cut(s) 444, 486, 567, 651, 1384
HaeII RGCGCY 2 cut(s) 252, 1108
HaeIII GGCC 4 cut(s) 1358, 1377, 1383, 1511
HapII CCGG 3 cut(s) 1171, 1332, 1536
HhaI GCGC 3 cut(s) 13, 251, 1107
Hin1II CATG 3 cut(s) 125, 161, 1283
Hin6I GCGC 3 cut(s) 11, 249, 1105
HinP1I GCGC 3 cut(s) 11, 249, 1105
HincII GTYRAC 2 cut(s) 524, 1319
HindII GTYRAC 2 cut(s) 524, 1319
HindIII AAGCTT 3 cut(s) 21, 150, 641
HinfI GANTC 5 cut(s) 95, 206, 755, 1185, 1480
HpaII CCGG 3 cut(s) 1171, 1332, 1536
HphI GGTGA 4 cut(s) 44, 524, 1000, 1138
Hpy166II GTNNAC 4 cut(s) 524, 795, 1319, 1340
Hpy188I TCNGA 7 cut(s) 531, 544, 832, 949, 1048, 1203, 1498
Hpy188III TCNNGA 5 cut(s) 89, 158, 491, 1392, 1536
Hpy8I GTNNAC 4 cut(s) 524, 795, 1319, 1340
Hpy99I CGWCG 2 cut(s) 1311, 1320
HpyCH4III ACNGT 5 cut(s) 1075, 1138, 1411, 1417, 1435
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 7 cut(s) 84, 263, 325, 374, 443, 452, 569
HpyF3I CTNAG 7 cut(s) 117, 675, 740, 969, 1082, 1200, 1497
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 3 cut(s) 125, 161, 1283
HspAI GCGC 3 cut(s) 11, 249, 1105
Kpn2I TCCGGA 1 cut(s) 1535
KspI CCGCGG 1 cut(s) 1387
Kzo9I GATC 4 cut(s) 1121, 1150, 1468, 1500
LmnI GCTCC 6 cut(s) 424, 595, 647, 736, 1102, 1195
Lsp1109I GCAGC 4 cut(s) 455, 472, 553, 662
LweI GCATC 1 cut(s) 430
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 4 cut(s) 96, 814, 1411, 1417
MalI GATC 4 cut(s) 1123, 1152, 1470, 1502
MboI GATC 4 cut(s) 1121, 1150, 1468, 1500
MboII GAAGA 9 cut(s) 17, 47, 104, 203, 268, 428, 692, 1250, 1463
MflI RGATCY 1 cut(s) 1468
MhlI GDGCHC 2 cut(s) 1369, 1399
MlyI GAGTC 3 cut(s) 104, 215, 1474
MmeI TCCRAC 1 cut(s) 573
Mph1103I ATGCAT 1 cut(s) 86
MroI TCCGGA 1 cut(s) 1535
MroXI GAANNNNTTC 1 cut(s) 791
MseI TTAA 8 cut(s) 26, 78, 291, 506, 879, 1115, 1143, 1543
MslI CAYNNNNRTG 1 cut(s) 626
MspA1I CMGCKG 1 cut(s) 1386
MspI CCGG 3 cut(s) 1171, 1332, 1536
MspR9I CCNGG 2 cut(s) 1171, 1332
Mva1269I GAATGC 2 cut(s) 84, 265
MvnI CGCG 1 cut(s) 1386
NciI CCSGG 2 cut(s) 1171, 1332
NdeI CATATG 1 cut(s) 623
NdeII GATC 4 cut(s) 1121, 1150, 1468, 1500
NlaIII CATG 3 cut(s) 125, 161, 1283
NlaIV GGNNCC 1 cut(s) 1359
NmeAIII GCCGAG 1 cut(s) 1403
NmuCI GTSAC 4 cut(s) 96, 814, 1411, 1417
NsbI TGCGCA 1 cut(s) 12
NsiI ATGCAT 1 cut(s) 86
NspV TTCGAA 1 cut(s) 720
PaeR7I CTCGAG 1 cut(s) 1392
PagI TCATGA 1 cut(s) 157
PaqCI CACCTGC 1 cut(s) 1204
PcsI WCGNNNNNNNCGW 4 cut(s) 1171, 1315, 1321, 1375
PctI GAATGC 2 cut(s) 84, 265
PdmI GAANNNNTTC 1 cut(s) 791
PfeI GAWTC 2 cut(s) 755, 1185
PkrI GCNGC 5 cut(s) 445, 487, 568, 652, 1385
PleI GAGTC 3 cut(s) 103, 214, 1474
PpsI GAGTC 3 cut(s) 103, 214, 1474
PspN4I GGNNCC 1 cut(s) 1359
PspPI GGNCC 3 cut(s) 1303, 1357, 1510
PsuI RGATCY 1 cut(s) 1468
RsaI GTAC 4 cut(s) 115, 402, 897, 920
RsaNI GTAC 4 cut(s) 114, 401, 896, 919
RseI CAYNNNNRTG 1 cut(s) 626
SacII CCGCGG 1 cut(s) 1387
SalI GTCGAC 1 cut(s) 1317
SaqAI TTAA 8 cut(s) 26, 78, 291, 506, 879, 1115, 1143, 1543
SatI GCNGC 5 cut(s) 444, 486, 567, 651, 1384
Sau3AI GATC 4 cut(s) 1121, 1150, 1468, 1500
Sau96I GGNCC 3 cut(s) 1303, 1357, 1510
ScaI AGTACT 2 cut(s) 115, 402
SchI GAGTC 3 cut(s) 104, 215, 1474
ScrFI CCNGG 2 cut(s) 1171, 1332
SduI GDGCHC 2 cut(s) 1369, 1399
SfaNI GCATC 1 cut(s) 430
Sfr274I CTCGAG 1 cut(s) 1392
Sfr303I CCGCGG 1 cut(s) 1387
SfuI TTCGAA 1 cut(s) 720
SgrBI CCGCGG 1 cut(s) 1387
SinI GGWCC 1 cut(s) 1303
SlaI CTCGAG 1 cut(s) 1392
SmiMI CAYNNNNRTG 1 cut(s) 626
SmlI CTYRAG 3 cut(s) 489, 953, 1392
SmoI CTYRAG 3 cut(s) 489, 953, 1392
SsiI CCGC 5 cut(s) 1067, 1289, 1335, 1384, 1386
StyD4I CCNGG 2 cut(s) 1169, 1330
TaaI ACNGT 5 cut(s) 1075, 1138, 1411, 1417, 1435
TaiI ACGT 1 cut(s) 184
TaqI TCGA 8 cut(s) 720, 842, 1153, 1183, 1267, 1318, 1324, 1393
TatI WGTACW 4 cut(s) 113, 400, 895, 918
TauI GCSGC 1 cut(s) 1386
TfiI GAWTC 2 cut(s) 755, 1185
Tru1I TTAA 8 cut(s) 26, 78, 291, 506, 879, 1115, 1143, 1543
Tru9I TTAA 8 cut(s) 26, 78, 291, 506, 879, 1115, 1143, 1543
TscAI CASTG 4 cut(s) 660, 802, 1078, 1422
TseFI GTSAC 4 cut(s) 96, 814, 1411, 1417
TseI GCWGC 4 cut(s) 443, 485, 566, 650
Tsp45I GTSAC 4 cut(s) 96, 814, 1411, 1417
TspDTI ATGAA 6 cut(s) 138, 174, 324, 492, 618, 1080
TspGWI ACGGA 3 cut(s) 218, 764, 1295
TspRI CASTG 4 cut(s) 660, 802, 1078, 1422
VpaK11BI GGWCC 1 cut(s) 1303
XapI RAATTY 4 cut(s) 126, 140, 502, 749
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XhoI CTCGAG 1 cut(s) 1392
XmiI GTMKAC 1 cut(s) 1318
XmnI GAANNNNTTC 1 cut(s) 791
ZrmI AGTACT 2 cut(s) 115, 402
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.