Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001383

Physical Location & Seq

Genomic Coordinates Forward (+)

704358 .. 707130

Gene Structure 2773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G009100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAAGAAATAGTTGTAGTTATATTCAGAGAAGCCTTGAAGGATGCTGAGATGGAAAATCTAGAAAAAGGAAAACAACTAGAAGTTGAGGTTGCAAACAAAGAAAAGTTGAACCAAAAAATACTCTTTCTGGCAGAAGCAAAGAAGCGATTGGAACAAGAGGCAGCAGCTGCCTTGGAAAAGGAAAAGGAGCGATGTGAACTAGCTGCTCAAGAGCTTGAAAATTTAAGGGGTGAATCAAATGCTGCACATCGTAATTTGGTTGAAAGACATAAGGCAGAAATTTGCAAGTTAGATCAGATGCTTCTTGATGTCAACCAAGAGAAGCAGAATGCTGTGTCTTTGTTTGAAGCAAAAGAAAGGGAGTTCAAGCAGCAATTGAAATCATTAGTTGTCTATAGCTGTGGATTATTGAGAGCGATTACTGATTTTGAATGTAGAGTAACACAAGATATTTCAGGAAAATGTTCAAGGTTGAAGAGTTTGAGTTCTCAATCGCATTCGCTTAAACAAAAAGCTAAAGTACTTGTAAAAAGAACGATTCTATACAAGCAGGGATTTGAAAGGAAATGTTCTGACCTTCTAAAAGCTGAAGCCGAGGTTGATCTTTTGGGGCAGGAGGTGGACACTCTATCGAGCTTGGTTGAAAAAATATACATGGCCCTTGATCATTATTCACCAATATTGCAACATTATGCTGGAATACCTGAGATCTTGAAGCTCGTGAGAGGAAAATTACGTGGACGTACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

28.68

Weight (kDa)

8.41

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34730 AT2G34730
fragaria_vesca	FvH4_3g10170 FvH4_3g10170 FvH4_3g10170 FvH4_3g10170 FvH4_3g10170 FvH4_3g10170
malus_domestica	MD05G1272600.v1.1 MD05G1272700.v1.1 MD10G1252800.v1.1
prunus_persica	Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.6G009000_v2.0.a1 Prupe.6G009100_v2.0.a1 Prupe.6G066700_v2.0.a1
pyrus_communis	pycom10g20850
rosa_chinensis	RchiOBHm_Chr5g0016081 RchiOBHm_Chr5g0016211 RchiOBHm_Chr5g0016261
rosa_laevigata	RLG00000032239 RLG00000032244
rosa_multiflora	Rmu_co7978980.1_g000001 Rmu_co8206716.1_g000001 Rmu_sc0000299.1_g000011 Rmu_sc0005506.1_g000012 Rmu_sc0007230.1_g000007 Rmu_sc0015959.1_g000001 Rmu_sc0015959.1_g000002 Rmu_sc0015959.1_g000016
rosa_roxburghii	Rroxscaffold_1G00060550 Rroxscaffold_1G00060580
rosa_rugosa	Rorug05G0031100 Rorug05G0031500 Rorug05G0031600 Rorug05G0031700
rosa_samantha	Rh5AG124500 Rh5AG124700 Rh5AG124800 Rh5BG123500 Rh5BG123700 Rh5CG135100 Rh5CG135600 Rh5CG136000 Rh5DG122800 Rh5DG123200 Rh5DG123500
rosa_wichuraiana	Rw5G010790 Rw5G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	223, 282
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	2 cut(s)	525, 748
AluBI	AGCT	8 cut(s)	170, 206, 217, 402, 518, 590, 639, 721
AluI	AGCT	8 cut(s)	170, 206, 217, 402, 518, 590, 639, 721
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	660
ApeKI	GCWGC	6 cut(s)	164, 167, 170, 206, 245, 373
ApoI	RAATTY	2 cut(s)	223, 282
Asp700I	GAANNNNTTC	1 cut(s)	466
AspS9I	GGNCC	1 cut(s)	661
AsuHPI	GGTGA	2 cut(s)	245, 669
BauI	CACGAG	1 cut(s)	722
BbvI	GCAGC	6 cut(s)	157, 176, 179, 193, 232, 385
BccI	CCATC	1 cut(s)	46
BclI	TGATCA	1 cut(s)	667
BfaI	CTAG	3 cut(s)	62, 80, 203
BfmI	CTRYAG	1 cut(s)	397
BglII	AGATCT	1 cut(s)	711
BisI	GCNGC	6 cut(s)	165, 168, 171, 207, 246, 374
BlsI	GCNGC	6 cut(s)	166, 169, 172, 208, 247, 375
BmcAI	AGTACT	1 cut(s)	525
BmgT120I	GGNCC	1 cut(s)	661
BmsI	GCATC	2 cut(s)	34, 291
BpuEI	CTTGAG	1 cut(s)	195
BsaAI	YACGTR	1 cut(s)	740
BsaJI	CCNNGG	2 cut(s)	174, 597
BseDI	CCNNGG	2 cut(s)	174, 597
BseGI	GGATG	1 cut(s)	49
BseMII	CTCAG	2 cut(s)	39, 699
BseXI	GCAGC	6 cut(s)	157, 176, 179, 193, 232, 385
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	662
BsmI	GAATGC	2 cut(s)	337, 499
BsnI	GGCC	1 cut(s)	662
Bsp143I	GATC	4 cut(s)	295, 604, 667, 711
BspANI	GGCC	1 cut(s)	662
BspCNI	CTCAG	2 cut(s)	40, 700
BssECI	CCNNGG	2 cut(s)	174, 597
BssMI	GATC	4 cut(s)	295, 604, 667, 711
BssSI	CACGAG	1 cut(s)	722
BssT1I	CCWWGG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	722
Bst6I	CTCTTC	1 cut(s)	473
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	740
BstDEI	CTNAG	2 cut(s)	48, 708
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	4 cut(s)	298, 607, 670, 714
BstMBI	GATC	4 cut(s)	295, 604, 667, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	397
BstV1I	GCAGC	6 cut(s)	157, 176, 179, 193, 232, 385
BstX2I	RGATCY	1 cut(s)	711
BstYI	RGATCY	1 cut(s)	711
BsuRI	GGCC	1 cut(s)	662
BtgZI	GCGATG	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	661
Csp6I	GTAC	2 cut(s)	524, 747
CviAII	CATG	1 cut(s)	658
CviQI	GTAC	2 cut(s)	524, 747
DdeI	CTNAG	2 cut(s)	48, 708
DpnI	GATC	4 cut(s)	297, 606, 669, 713
DpnII	GATC	4 cut(s)	295, 604, 667, 711
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	612
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	661
FaiI	YATR	7 cut(s)	23, 273, 399, 547, 655, 659, 696
FatI	CATG	1 cut(s)	657
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	6 cut(s)	165, 168, 171, 207, 246, 374
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	6 cut(s)	165, 168, 171, 207, 246, 374
FspBI	CTAG	3 cut(s)	62, 80, 203
GluI	GCNGC	6 cut(s)	165, 168, 171, 207, 246, 374
HaeIII	GGCC	1 cut(s)	662
Hin1II	CATG	1 cut(s)	661
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	2 cut(s)	236, 541
HphI	GGTGA	2 cut(s)	245, 669
Hpy166II	GTNNAC	4 cut(s)	200, 316, 625, 743
Hpy188I	TCNGA	3 cut(s)	29, 300, 577
Hpy188III	TCNNGA	6 cut(s)	62, 212, 308, 459, 715, 724
Hpy8I	GTNNAC	4 cut(s)	200, 316, 625, 743
HpyAV	CCTTC	2 cut(s)	34, 590
HpyCH4IV	ACGT	2 cut(s)	739, 745
HpyCH4V	TGCA	5 cut(s)	4, 95, 248, 288, 688
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	48, 708
HpySE526I	ACGT	2 cut(s)	739, 745
Hsp92II	CATG	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	4 cut(s)	295, 604, 667, 711
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	6 cut(s)	116, 444, 539, 602, 684, 720
Lsp1109I	GCAGC	6 cut(s)	157, 176, 179, 193, 232, 385
LweI	GCATC	2 cut(s)	34, 291
MaeI	CTAG	3 cut(s)	62, 80, 203
MaeII	ACGT	2 cut(s)	739, 745
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	4 cut(s)	297, 606, 669, 713
MboI	GATC	4 cut(s)	295, 604, 667, 711
MboII	GAAGA	1 cut(s)	490
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	711
MluCI	AATT	5 cut(s)	223, 256, 282, 377, 734
MnlI	CCTC	5 cut(s)	82, 154, 592, 613, 722
MroXI	GAANNNNTTC	1 cut(s)	466
MseI	TTAA	2 cut(s)	227, 507
MspA1I	CMGCKG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	377
Mva1269I	GAATGC	2 cut(s)	337, 499
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	4 cut(s)	295, 604, 667, 711
NlaIII	CATG	1 cut(s)	661
NmeAIII	GCCGAG	1 cut(s)	622
PctI	GAATGC	2 cut(s)	337, 499
PdmI	GAANNNNTTC	1 cut(s)	466
PfeI	GAWTC	2 cut(s)	236, 541
PkrI	GCNGC	6 cut(s)	166, 169, 172, 208, 247, 375
Ppu21I	YACGTR	1 cut(s)	740
PspPI	GGNCC	1 cut(s)	661
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	711
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	525, 748
RsaNI	GTAC	2 cut(s)	524, 747
SaqAI	TTAA	2 cut(s)	227, 507
SatI	GCNGC	6 cut(s)	165, 168, 171, 207, 246, 374
Sau3AI	GATC	4 cut(s)	295, 604, 667, 711
Sau96I	GGNCC	1 cut(s)	661
ScaI	AGTACT	1 cut(s)	525
SfaNI	GCATC	2 cut(s)	34, 291
SfcI	CTRYAG	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	210
SmoI	CTYRAG	1 cut(s)	210
Sse9I	AATT	5 cut(s)	223, 256, 282, 377, 734
SspI	AATATT	1 cut(s)	684
SspMI	CTAG	3 cut(s)	62, 80, 203
StyI	CCWWGG	1 cut(s)	174
TaiI	ACGT	2 cut(s)	742, 748
TaqI	TCGA	1 cut(s)	635
TasI	AATT	5 cut(s)	223, 256, 282, 377, 734
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	2 cut(s)	236, 541
Tru1I	TTAA	2 cut(s)	227, 507
Tru9I	TTAA	2 cut(s)	227, 507
TseI	GCWGC	6 cut(s)	164, 167, 170, 206, 245, 373
XapI	RAATTY	2 cut(s)	223, 282
XbaI	TCTAGA	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	466
XspI	CTAG	3 cut(s)	62, 80, 203
ZrmI	AGTACT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.