Rorug05G0031100

WPP domain-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001383
Physical Location & Seq
Reverse (-)
2010027 .. 2012954
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0031100.1

Sequence Viewer

Length: 450 bp
ATGGCCAAGATTTTCAAATACATCTCTCAAATATTTGTTGTGAAGGAGCGTGAAATGGAAATTGGGTTCCCGACAGATGTGAAACATGTAGCTCACATTGGGTGGGATGGTCCGTCTGATAGTGCACCCAGTTGGATGAATGGGTTCAAAAATGGACCCGATTTCTCAACACTGGGTCGCAATAACACCGGTGATCGAAGGGACTCCTCCAGCAGCACGGCTCCTTCTCCTTGGGCCTCCCACGATTTTGAGCAATCCATGGGACGCCAGCCATCAACGAACTTGATAGACCTTCCTCCTAATGACCCTGCAAATGTTCCCAAGAAGCCAAAGCGGAAAAAGGTCAAATCTTCGTCTTCCTCTTCCTCATCATCGAGATCGTCACGACCAATGAAGGCGTCAAAGGCTACATATACGCAAATGGAACCTACACCAAACCTGCTAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.43

Weight (kDa)

9.82

Isoelectric Point (pI)

62.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 334
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 2 cut(s) 265, 398
AflIII ACRYGT 1 cut(s) 85
AgeI ACCGGT 1 cut(s) 188
AgsI TTSAA 2 cut(s) 16, 148
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw21I GWGCWC 1 cut(s) 127
Alw44I GTGCAC 1 cut(s) 123
AoxI GGCC 2 cut(s) 3, 234
ApaLI GTGCAC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 213
AsiGI ACCGGT 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 143
AspS9I GGNCC 3 cut(s) 110, 155, 234
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 2 cut(s) 110, 155
BaeGI GKGCMC 1 cut(s) 127
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 225
BccI CCATC 2 cut(s) 101, 280
BceAI ACGGC 1 cut(s) 234
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
Bme18I GGWCC 2 cut(s) 110, 155
BmgT120I GGNCC 3 cut(s) 110, 155, 234
BmiI GGNNCC 4 cut(s) 68, 157, 222, 426
BmrI ACTGGG 2 cut(s) 123, 182
BmuI ACTGGG 2 cut(s) 123, 182
BpiI GAAGAC 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 193
BsaHI GRCGYC 2 cut(s) 265, 398
BsaJI CCNNGG 2 cut(s) 230, 258
BsaWI WCCGGW 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 129, 177
BseDI CCNNGG 2 cut(s) 230, 258
BseGI GGATG 2 cut(s) 112, 141
BseNI ACTGG 2 cut(s) 129, 177
BseRI GAGGAG 1 cut(s) 196
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 1 cut(s) 225
BshFI GGCC 2 cut(s) 5, 236
BshTI ACCGGT 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 2 cut(s) 215, 276
BsmFI GGGAC 2 cut(s) 215, 276
BsnI GGCC 2 cut(s) 5, 236
Bsp1286I GDGCHC 1 cut(s) 127
Bsp143I GATC 2 cut(s) 193, 377
Bsp19I CCATGG 1 cut(s) 258
BspACI CCGC 1 cut(s) 334
BspANI GGCC 2 cut(s) 5, 236
BspLI GGNNCC 4 cut(s) 68, 157, 222, 426
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 2 cut(s) 129, 177
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 230, 258
BssMI GATC 2 cut(s) 193, 377
BssNI GRCGYC 2 cut(s) 265, 398
BssT1I CCWWGG 2 cut(s) 230, 258
Bst6I CTCTTC 1 cut(s) 367
BstACI GRCGYC 2 cut(s) 265, 398
BstC8I GCNNGC 1 cut(s) 269
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 112, 141
BstKTI GATC 2 cut(s) 196, 380
BstMBI GATC 2 cut(s) 193, 377
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNSI RCATGY 1 cut(s) 89
BstSLI GKGCMC 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 348
BsuRI GGCC 2 cut(s) 5, 236
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 2 cut(s) 112, 141
BtsIMutI CAGTG 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 269
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 3 cut(s) 110, 155, 234
CseI GACGC 2 cut(s) 273, 387
CspAI ACCGGT 1 cut(s) 188
CviAII CATG 2 cut(s) 86, 259
CviJI RGCY 7 cut(s) 5, 92, 221, 236, 271, 328, 407
CviKI_1 RGCY 7 cut(s) 5, 92, 221, 236, 271, 328, 407
DpnI GATC 2 cut(s) 195, 379
DpnII GATC 2 cut(s) 193, 377
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
Eco130I CCWWGG 2 cut(s) 230, 258
Eco47I GGWCC 2 cut(s) 110, 155
EcoT14I CCWWGG 2 cut(s) 230, 258
ErhI CCWWGG 2 cut(s) 230, 258
FaeI CATG 2 cut(s) 89, 262
FaiI YATR 5 cut(s) 87, 260, 412, 414, 448
FaqI GGGAC 2 cut(s) 215, 276
FatI CATG 2 cut(s) 85, 258
Fnu4HI GCNGC 1 cut(s) 214
FokI GGATG 2 cut(s) 119, 148
Fsp4HI GCNGC 1 cut(s) 214
GluI GCNGC 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 2 cut(s) 5, 236
HapII CCGG 1 cut(s) 189
HgaI GACGC 2 cut(s) 273, 387
Hin1I GRCGYC 2 cut(s) 265, 398
Hin1II CATG 2 cut(s) 89, 262
HinfI GANTC 1 cut(s) 203
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 3 cut(s) 70, 375, 384
Hpy8I GTNNAC 1 cut(s) 125
HpyAV CCTTC 5 cut(s) 37, 192, 234, 302, 388
HpyCH4V TGCA 2 cut(s) 125, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
Hsp92I GRCGYC 2 cut(s) 265, 398
Hsp92II CATG 2 cut(s) 89, 262
Kzo9I GATC 2 cut(s) 193, 377
LmnI GCTCC 2 cut(s) 46, 226
LpnPI CCDG 6 cut(s) 142, 158, 202, 223, 281, 321
Lsp1109I GCAGC 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 381
MalI GATC 2 cut(s) 195, 379
MboI GATC 2 cut(s) 193, 377
MboII GAAGA 3 cut(s) 342, 348, 354
MhlI GDGCHC 1 cut(s) 127
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 60
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 5 cut(s) 217, 247, 306, 370, 376
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 143
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 404
NcoI CCATGG 1 cut(s) 258
NdeII GATC 2 cut(s) 193, 377
NlaIII CATG 2 cut(s) 89, 262
NlaIV GGNNCC 4 cut(s) 68, 157, 222, 426
NmuCI GTSAC 1 cut(s) 381
NspI RCATGY 1 cut(s) 89
PciI ACATGT 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 143
PinAI ACCGGT 1 cut(s) 188
PkrI GCNGC 1 cut(s) 215
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PscI ACATGT 1 cut(s) 85
PspN4I GGNNCC 4 cut(s) 68, 157, 222, 426
PspPI GGNCC 3 cut(s) 110, 155, 234
SatI GCNGC 1 cut(s) 214
Sau3AI GATC 2 cut(s) 193, 377
Sau96I GGNCC 3 cut(s) 110, 155, 234
SchI GAGTC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 127
SetI ASST 5 cut(s) 94, 294, 345, 430, 441
SgrAI CRCCGGYG 1 cut(s) 188
SinI GGWCC 2 cut(s) 110, 155
Sse9I AATT 1 cut(s) 60
SsiI CCGC 1 cut(s) 334
SspI AATATT 1 cut(s) 33
StyI CCWWGG 2 cut(s) 230, 258
TaqI TCGA 2 cut(s) 196, 374
TasI AATT 1 cut(s) 60
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 381
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 381
TspDTI ATGAA 2 cut(s) 152, 407
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 1 cut(s) 177
VneI GTGCAC 1 cut(s) 123
VpaK11BI GGWCC 2 cut(s) 110, 155
XceI RCATGY 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.