Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7978980.1

Orthogroup ID

OG0001383

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 424

Gene Structure 424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7978980.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 391 bp

atggagcgtttaaaagtcatggataatgatgttaaatcgtgcaatggtgggatggagagtttagaggtcatgcgtaatggttttgtatcatgcaatggtgggttggtgcagcataattatagtgtgaaagaaagtgagaatccggatgttgatcttcttgaggatttggactcttacatggaagatatcaacgaacgattgaccatatcaaggatggtgagtgactcggtcatcaagggtatggtgaatgcagtaacagaagaggcagctgagaaaattgctcagaaagaacaagaggtgactaaattgaaggaactgttacatatttatcacgtgggtgctgatgagaacgaattctcggggtctttagtaatgctccgagagtcaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.64

Weight (kDa)

4.6

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34730 AT2G34730
fragaria_vesca	FvH4_3g10170 FvH4_3g10170 FvH4_3g10170 FvH4_3g10170 FvH4_3g10170 FvH4_3g10170
malus_domestica	MD05G1272600.v1.1 MD05G1272700.v1.1 MD10G1252800.v1.1
prunus_persica	Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.6G009000_v2.0.a1 Prupe.6G009100_v2.0.a1 Prupe.6G066700_v2.0.a1
pyrus_communis	pycom10g20850
rosa_chinensis	RchiOBHm_Chr5g0016081 RchiOBHm_Chr5g0016211 RchiOBHm_Chr5g0016261
rosa_laevigata	RLG00000032239 RLG00000032244
rosa_multiflora	Rmu_co7978980.1_g000001 Rmu_co8206716.1_g000001 Rmu_sc0000299.1_g000011 Rmu_sc0005506.1_g000012 Rmu_sc0007230.1_g000007 Rmu_sc0015959.1_g000001 Rmu_sc0015959.1_g000002 Rmu_sc0015959.1_g000016
rosa_roxburghii	Rroxscaffold_1G00060550 Rroxscaffold_1G00060580
rosa_rugosa	Rorug05G0031100 Rorug05G0031500 Rorug05G0031600 Rorug05G0031700
rosa_samantha	Rh5AG124500 Rh5AG124700 Rh5AG124800 Rh5BG123500 Rh5BG123700 Rh5CG135100 Rh5CG135600 Rh5CG136000 Rh5DG122800 Rh5DG123200 Rh5DG123500
rosa_wichuraiana	Rw5G010790 Rw5G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	353
AcvI	CACGTG	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	310
AleI	CACNNNNGTG	1 cut(s)	336
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	358
Aor13HI	TCCGGA	1 cut(s)	142
ApeKI	GCWGC	2 cut(s)	109, 266
ApoI	RAATTY	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	353
AsuHPI	GGTGA	3 cut(s)	229, 256, 310
AvaI	CYCGRG	1 cut(s)	358
BbrPI	CACGTG	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	121, 278
BccI	CCATC	2 cut(s)	46, 208
BisI	GCNGC	2 cut(s)	110, 267
BlsI	GCNGC	2 cut(s)	111, 268
BmeT110I	CYCGRG	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse3DI	GCAATG	2 cut(s)	49, 100
Bse8I	GATNNNNATC	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	142
BseGI	GGATG	3 cut(s)	57, 151, 219
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMI	GCAATG	2 cut(s)	49, 100
BseMII	CTCAG	2 cut(s)	261, 296
BseXI	GCAGC	2 cut(s)	121, 278
BsgI	GTGCAG	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	358
Bsp13I	TCCGGA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	151
BspCNI	CTCAG	2 cut(s)	262, 295
BspEI	TCCGGA	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	49, 100
BssMI	GATC	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	270, 282
BstF5I	GGATG	3 cut(s)	57, 151, 219
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	121, 278
BtsCI	GGATG	3 cut(s)	57, 151, 219
CviAII	CATG	4 cut(s)	19, 70, 90, 178
CviJI	RGCY	1 cut(s)	269
CviKI_1	RGCY	1 cut(s)	269
DdeI	CTNAG	2 cut(s)	270, 282
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
DraI	TTTAAA	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco32I	GATATC	1 cut(s)	187
Eco72I	CACGTG	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	358
EcoRI	GAATTC	1 cut(s)	353
EcoRV	GATATC	1 cut(s)	187
FaeI	CATG	4 cut(s)	22, 73, 93, 181
FaiI	YATR	9 cut(s)	20, 71, 91, 114, 120, 179, 206, 242, 324
FatI	CATG	4 cut(s)	18, 69, 89, 177
Fnu4HI	GCNGC	2 cut(s)	110, 267
FokI	GGATG	3 cut(s)	64, 158, 226
Fsp4HI	GCNGC	2 cut(s)	110, 267
GluI	GCNGC	2 cut(s)	110, 267
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	4 cut(s)	22, 73, 93, 181
HinfI	GANTC	4 cut(s)	139, 170, 224, 383
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	3 cut(s)	229, 256, 310
Hpy188I	TCNGA	2 cut(s)	285, 380
Hpy188III	TCNNGA	3 cut(s)	143, 158, 387
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	4 cut(s)	42, 93, 109, 251
HpyF3I	CTNAG	2 cut(s)	270, 282
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	4 cut(s)	22, 73, 93, 181
Kpn2I	TCCGGA	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	4, 381
LpnPI	CCDG	1 cut(s)	156
Lsp1109I	GCAGC	2 cut(s)	121, 278
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	4 cut(s)	221, 253, 298, 318
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	3 cut(s)	146, 194, 272
MluCI	AATT	4 cut(s)	115, 276, 305, 353
MlyI	GAGTC	2 cut(s)	164, 218
MnlI	CCTC	4 cut(s)	58, 154, 256, 289
MroI	TCCGGA	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	2 cut(s)	11, 33
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	253
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	4 cut(s)	22, 73, 93, 181
NmuCI	GTSAC	2 cut(s)	221, 298
OliI	CACNNNNGTG	1 cut(s)	336
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	139
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	111, 268
PleI	GAGTC	2 cut(s)	164, 218
PmaCI	CACGTG	1 cut(s)	334
PmlI	CACGTG	1 cut(s)	334
PpsI	GAGTC	2 cut(s)	164, 218
Ppu21I	YACGTR	1 cut(s)	334
PspCI	CACGTG	1 cut(s)	334
PsyI	GACNNNGTC	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	11, 33
SatI	GCNGC	2 cut(s)	110, 267
Sau3AI	GATC	1 cut(s)	151
SchI	GAGTC	2 cut(s)	164, 218
SetI	ASST	4 cut(s)	69, 271, 300, 336
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	4 cut(s)	115, 276, 305, 353
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	1 cut(s)	336
TaqII	GACCGA	1 cut(s)	217
TasI	AATT	4 cut(s)	115, 276, 305, 353
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	11, 33
Tru9I	TTAA	2 cut(s)	11, 33
TseFI	GTSAC	2 cut(s)	221, 298
TseI	GCWGC	2 cut(s)	109, 266
Tsp45I	GTSAC	2 cut(s)	221, 298
Tth111I	GACNNNGTC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.