Rmu_sc0015959.1_g000001

WPP domain-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015959.1
OG0001383
Physical Location & Seq
Reverse (-)
1 .. 3811
3811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015959.1_g000001.1.cds

Sequence Viewer

Length: 2274 bp
atgaagaggattaattccagttctggtttgggtgacatactgcaagataaagtatctgacaggtgggatgtggatagaaccttggatagtctaaagactacaatagcaggtgtctgtcaacaggtggaagaaatggttcacttgtcaaaggcatcagtatatgagtggcaggtggatcaggagtttaaagaaaaaattgaaggtgaaattgaagcgcttgtgatgaggaattgcatttggagcgttgaagaaaacatgtgggattgcttttctggtgcaaaaaatgtgaactgggatggaaggatcaaagggatatcaagtatacgtgatgaattagatgctatttctaaatcactatctgtctctgacaatgggcagctatcttctcatggatccttggaaggtgaagaagagagtagcaatggtaaaaagggtgccggttcttaccgcgaggtattgaacaatcttaaatcagcatcatcattaccatcaacaataacaacaacagcaacaacattatcaccatcagcatcatcatcttcatctgttcgggaagaaaatggtatacatgacgagtcagaaataaatatggaagaagatttagatccagctgccttgcttaagcatatgaagaaatgtaagaatgagattactgaattgaagagaaatcatgagttagaaatacaagatctgactgagcagcatttcagccacatgaaggaattgctgaaagaaaggagaccgtctttaacattgaagaataagttcgatatgttgagaaagagaatctctgaggtgatttctaaagtagatgaaattcttgtagaaaagggggaagtagctatattgcttcctcatacatttggcagcaatgaagaaagtctcagcagcttgaaagatagagtggaatcgctcctctcagaaaaccaccaactcagagatttgcttgaggataagaagagagaaattaagtgcctttcactacaagtttctgaagctgcagagaacctgtcgcaacactctctggctgaggcaaagttatcgaaaacagctggaaatattaaagcagctatggaagatgcgcatattgaagctttaattggtgaacatttatttgctgttattgtcaaggaagtggtggatgagattaaatgcattgctgaagagtcacaggtggagaatagtattatgaatgaagatttgaatatggagtccatcatcacgcaagaactatgtggtgttatgttcaaagatgatgaggagaaactcagtgagctgaacattaaatatattgaggaatatgaactttgggttttgcaggagatggacaaacaagaaaaggaaaaacaattagaagtggaggttgcaaacaaagtgagcttacagaaagaagtacattttctggtaggagaaaaggagcagttggcacgagatgcagcagctgcattggaaatcgaaaaagaaagatatgaatcagctgctcaagaggttgaaaatttaaggggtgagacgtgtcaacatcagaaattgatttcagaaagcgttgaagagtcaaatggtgcaaagcgtgatttggctgaggcgttggagcaaaatgaagaaaatgagcagttggcgcgagatgcagtagctgcattggcaatcgaaaaagaaagatatgaatcagctgctcaagaggttgaaaatttaaggggtgagatatgtcaacatcggaaattgatttcagaaagcgttgtaaagtcaaatgctgcaaagcgtgatttggctgaggcgttggagcaaaatgaaagacacaaggcagacatatgtaagttaggacaaaagcatgaagcagcagtgaaaaagctgaggcaagttgaggaagataggaggaggcttcttgatgtcaaccaagagaagcagattgctgtatctttgttcgaagcaaaagaaagggagcttagcgagcaacttaaatcaatagctgtctatatcagtggattattggaaacgttcgcttattttgaacgtagagtgacacaagatatttcagggaaatgttcgaggttgaaaagtttgacttctcaatcacatttgcttaaacaaaaagctgatgtacttgtaagacgaggattgctgtacaagcaaggactggaaaagaaatgttctgaccttgagaaagctgaaaccgaggtcgatcttttgggggataaggtggacactcagttgaagcttgttgaaaaaatatacattgcccttgatcattatgcaccaatattgcagcattatcctgga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
No domains found.

Protein Analysis

758

Amino Acids

85.81

Weight (kDa)

5.03

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 98, 160
Acc16I TGCGCA 1 cut(s) 1083
Acc36I ACCTGC 2 cut(s) 98, 160
AccB1I GGYRCC 1 cut(s) 434
AccI GTMKAC 2 cut(s) 322, 565
AccII CGCG 2 cut(s) 450, 1618
AciI CCGC 1 cut(s) 448
AclI AACGTT 1 cut(s) 1991
AclWI GGATC 5 cut(s) 183, 311, 387, 400, 599
AcsI RAATTY 3 cut(s) 816, 1495, 1684
AcuI CTGAAG 2 cut(s) 1014, 1182
AfaI GTAC 3 cut(s) 1395, 2097, 2120
AfeI AGCGCT 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 718
AflII CTTAAG 1 cut(s) 620
AflIII ACRYGT 2 cut(s) 255, 1511
AjiI CACGTC 1 cut(s) 1512
AjnI CCWGG 1 cut(s) 2269
AjuI GAANNNNNNNTTGG 2 cut(s) 1083, 1115
Alw26I GTCTC 4 cut(s) 367, 733, 887, 1502
AlwI GGATC 5 cut(s) 183, 311, 387, 400, 599
AlwNI CAGNNNCTG 2 cut(s) 1442, 1631
Aor51HI AGCGCT 1 cut(s) 216
ApoI RAATTY 3 cut(s) 816, 1495, 1684
AseI ATTAAT 1 cut(s) 12
Asp700I GAANNNNTTC 2 cut(s) 135, 764
AspLEI GCGC 3 cut(s) 217, 1084, 1618
AsuHPI GGTGA 8 cut(s) 44, 215, 416, 513, 808, 1115, 1517, 1706
AsuII TTCGAA 1 cut(s) 1920
BamHI GGATCC 1 cut(s) 392
BanI GGYRCC 1 cut(s) 434
BauI CACGAG 1 cut(s) 1428
BbvCI CCTCAGC 4 cut(s) 1029, 1578, 1767, 1847
BccI CCATC 5 cut(s) 290, 496, 532, 1223, 1318
BcgI CGANNNNNNTGC 2 cut(s) 1023, 1057
BciT130I CCWGG 1 cut(s) 2271
BclI TGATCA 1 cut(s) 2239
BcoDI GTCTC 4 cut(s) 367, 733, 887, 1502
BfmI CTRYAG 1 cut(s) 999
BfoI RGCGCY 1 cut(s) 218
BfrI CTTAAG 1 cut(s) 620
BfuAI ACCTGC 2 cut(s) 98, 160
BglII AGATCT 1 cut(s) 688
BlpI GCTNAGC 1 cut(s) 1940
Bme1390I CCNGG 1 cut(s) 2271
BmgBI CACGTC 1 cut(s) 1512
BmiI GGNNCC 2 cut(s) 394, 436
BmrFI CCNGG 1 cut(s) 2271
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 7 cut(s) 161, 328, 485, 539, 1069, 1423, 1612
BmuI ACTGGG 1 cut(s) 301
Bpu10I CCTNAGC 4 cut(s) 1029, 1578, 1767, 1847
Bpu1102I GCTNAGC 1 cut(s) 1940
Bpu14I TTCGAA 1 cut(s) 1920
BpuEI CTTGAG 4 cut(s) 968, 1467, 1656, 2174
BsaAI YACGTR 1 cut(s) 326
BsaBI GATNNNNATC 3 cut(s) 603, 1471, 1660
BsaI GGTCTC 1 cut(s) 733
BsaJI CCNNGG 3 cut(s) 81, 396, 2169
Bsc4I CCNNNNNNNGG 1 cut(s) 718
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 3 cut(s) 18, 296, 2136
Bse3DI GCAATG 4 cut(s) 427, 877, 1155, 2229
Bse8I GATNNNNATC 3 cut(s) 603, 1471, 1660
BseBI CCWGG 1 cut(s) 2271
BseDI CCNNGG 3 cut(s) 81, 396, 2169
BseGI GGATG 3 cut(s) 73, 301, 1147
BseJI GATNNNNATC 3 cut(s) 603, 1471, 1660
BseLI CCNNNNNNNGG 1 cut(s) 718
BseMI GCAATG 4 cut(s) 427, 877, 1155, 2229
BseNI ACTGG 3 cut(s) 18, 296, 2136
BseRI GAGGAG 3 cut(s) 905, 1274, 1885
Bsh1236I CGCG 2 cut(s) 450, 1618
BshNI GGYRCC 1 cut(s) 434
BsiSI CCGG 1 cut(s) 438
BslI CCNNNNNNNGG 1 cut(s) 718
BsmAI GTCTC 4 cut(s) 367, 733, 887, 1502
BsmBI CGTCTC 1 cut(s) 1502
Bso31I GGTCTC 1 cut(s) 733
Bsp119I TTCGAA 1 cut(s) 1920
Bsp1407I TGTACA 1 cut(s) 2118
Bsp143I GATC 7 cut(s) 175, 303, 392, 604, 688, 2176, 2239
Bsp1720I GCTNAGC 1 cut(s) 1940
BspACI CCGC 1 cut(s) 448
BspFNI CGCG 2 cut(s) 450, 1618
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 394, 436
BspMAI CTGCAG 1 cut(s) 1003
BspMI ACCTGC 2 cut(s) 98, 160
BspPI GGATC 5 cut(s) 183, 311, 387, 400, 599
BspT104I TTCGAA 1 cut(s) 1920
BspT107I GGYRCC 1 cut(s) 434
BspTI CTTAAG 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 733
BsrDI GCAATG 4 cut(s) 427, 877, 1155, 2229
BsrFI RCCGGY 1 cut(s) 437
BsrGI TGTACA 1 cut(s) 2118
BsrI ACTGG 3 cut(s) 18, 296, 2136
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 3 cut(s) 81, 396, 2169
BssMI GATC 7 cut(s) 175, 303, 392, 604, 688, 2176, 2239
BssNAI GTATAC 2 cut(s) 323, 566
BssSI CACGAG 1 cut(s) 1428
BssT1I CCWWGG 2 cut(s) 81, 396
Bst1107I GTATAC 2 cut(s) 323, 566
Bst2BI CACGAG 1 cut(s) 1428
Bst2UI CCWGG 1 cut(s) 2271
Bst4CI ACNGT 1 cut(s) 744
Bst6I CTCTTC 5 cut(s) 405, 656, 953, 1158, 1542
BstAFI CTTAAG 1 cut(s) 620
BstAPI GCANNNNNTGC 3 cut(s) 1433, 1442, 1631
BstAUI TGTACA 1 cut(s) 2118
BstBAI YACGTR 1 cut(s) 326
BstBI TTCGAA 1 cut(s) 1920
BstC8I GCNNGC 1 cut(s) 1946
BstF5I GGATG 3 cut(s) 73, 301, 1147
BstFNI CGCG 2 cut(s) 450, 1618
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 3 cut(s) 217, 1084, 1618
BstKTI GATC 7 cut(s) 178, 306, 395, 607, 691, 2179, 2242
BstMAI GTCTC 4 cut(s) 367, 733, 887, 1502
BstMBI GATC 7 cut(s) 175, 303, 392, 604, 688, 2176, 2239
BstMWI GCNNNNNNNGC 9 cut(s) 240, 1433, 1442, 1615, 1622, 1631, 1637, 1945, 2122
BstNI CCWGG 1 cut(s) 2271
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 2269
BstSFI CTRYAG 1 cut(s) 999
BstUI CGCG 2 cut(s) 450, 1618
BstX2I RGATCY 3 cut(s) 392, 604, 688
BstYI RGATCY 3 cut(s) 392, 604, 688
BstZ17I GTATAC 2 cut(s) 323, 566
BtrI CACGTC 1 cut(s) 1512
BtsCI GGATG 3 cut(s) 73, 301, 1147
BtsI GCAGTG 1 cut(s) 1842
BtsIMutI CAGTG 3 cut(s) 1276, 1842, 1981
BveI ACCTGC 2 cut(s) 98, 160
Cac8I GCNNGC 1 cut(s) 1946
CaiI CAGNNNCTG 2 cut(s) 1442, 1631
CciI TCATGA 1 cut(s) 670
CfoI GCGC 3 cut(s) 217, 1084, 1618
Cfr10I RCCGGY 1 cut(s) 437
Csp6I GTAC 3 cut(s) 1394, 2096, 2119
CviAII CATG 6 cut(s) 256, 389, 569, 671, 715, 1826
CviQI GTAC 3 cut(s) 1394, 2096, 2119
DpnI GATC 7 cut(s) 177, 305, 394, 606, 690, 2178, 2241
DpnII GATC 7 cut(s) 175, 303, 392, 604, 688, 2176, 2239
DraI TTTAAA 1 cut(s) 187
Eam1104I CTCTTC 5 cut(s) 405, 656, 953, 1158, 1542
EarI CTCTTC 5 cut(s) 405, 656, 953, 1158, 1542
Eco130I CCWWGG 2 cut(s) 81, 396
Eco31I GGTCTC 1 cut(s) 733
Eco32I GATATC 1 cut(s) 315
Eco47III AGCGCT 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 1014, 1182
EcoRII CCWGG 1 cut(s) 2269
EcoRV GATATC 1 cut(s) 315
EcoT14I CCWWGG 2 cut(s) 81, 396
EcoT22I ATGCAT 1 cut(s) 1157
ErhI CCWWGG 2 cut(s) 81, 396
Esp3I CGTCTC 1 cut(s) 1502
FaeI CATG 6 cut(s) 259, 392, 572, 674, 718, 1829
FalI AAGNNNNNCTT 2 cut(s) 2044, 2076
FatI CATG 6 cut(s) 255, 388, 568, 670, 714, 1825
FauNDI CATATG 2 cut(s) 627, 1805
FbaI TGATCA 1 cut(s) 2239
FblI GTMKAC 2 cut(s) 322, 565
FokI GGATG 3 cut(s) 80, 308, 1154
FspAI RTGCGCAY 1 cut(s) 1083
FspI TGCGCA 1 cut(s) 1083
GlaI GCGC 3 cut(s) 216, 1083, 1617
HaeII RGCGCY 1 cut(s) 218
HapII CCGG 1 cut(s) 438
HhaI GCGC 3 cut(s) 217, 1084, 1618
Hin1II CATG 6 cut(s) 259, 392, 572, 674, 718, 1829
Hin6I GCGC 3 cut(s) 215, 1082, 1616
HinP1I GCGC 3 cut(s) 215, 1082, 1616
HincII GTYRAC 4 cut(s) 119, 1517, 1706, 1888
HindII GTYRAC 4 cut(s) 119, 1517, 1706, 1888
HindIII AAGCTT 2 cut(s) 1092, 2210
HinfI GANTC 8 cut(s) 575, 786, 908, 1166, 1211, 1472, 1550, 1661
HpaII CCGG 1 cut(s) 438
HphI GGTGA 8 cut(s) 44, 215, 416, 513, 808, 1115, 1517, 1706
Hpy188III TCNNGA 6 cut(s) 179, 551, 671, 1484, 1673, 1880
HpyAV CCTTC 4 cut(s) 194, 294, 395, 712
HpyCH4III ACNGT 1 cut(s) 744
HpyCH4IV ACGT 4 cut(s) 325, 1511, 1991, 2008
HpyF10VI GCNNNNNNNGC 9 cut(s) 240, 1433, 1442, 1615, 1622, 1631, 1637, 1945, 2122
HpySE526I ACGT 4 cut(s) 325, 1511, 1991, 2008
Hsp92II CATG 6 cut(s) 259, 392, 572, 674, 718, 1829
HspAI GCGC 3 cut(s) 215, 1082, 1616
Ksp22I TGATCA 1 cut(s) 2239
Kzo9I GATC 7 cut(s) 175, 303, 392, 604, 688, 2176, 2239
LmnI GCTCC 6 cut(s) 240, 918, 1417, 1588, 1777, 1936
LweI GCATC 7 cut(s) 161, 328, 485, 539, 1069, 1423, 1612
MaeII ACGT 4 cut(s) 325, 1511, 1991, 2008
MaeIII GTNAC 3 cut(s) 32, 1167, 2014
MalI GATC 7 cut(s) 177, 305, 394, 606, 690, 2178, 2241
MboI GATC 7 cut(s) 175, 303, 392, 604, 688, 2176, 2239
MflI RGATCY 3 cut(s) 392, 604, 688
MlyI GAGTC 4 cut(s) 584, 1175, 1220, 1559
MmeI TCCRAC 2 cut(s) 1566, 1755
Mph1103I ATGCAT 1 cut(s) 1157
MroXI GAANNNNTTC 2 cut(s) 135, 764
MspA1I CMGCKG 5 cut(s) 611, 1052, 1442, 1478, 1667
MspCI CTTAAG 1 cut(s) 620
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 1 cut(s) 2271
MvaI CCWGG 1 cut(s) 2271
MvnI CGCG 2 cut(s) 450, 1618
MwoI GCNNNNNNNGC 9 cut(s) 240, 1433, 1442, 1615, 1622, 1631, 1637, 1945, 2122
NdeI CATATG 2 cut(s) 627, 1805
NdeII GATC 7 cut(s) 175, 303, 392, 604, 688, 2176, 2239
NlaIII CATG 6 cut(s) 259, 392, 572, 674, 718, 1829
NlaIV GGNNCC 2 cut(s) 394, 436
NmuCI GTSAC 3 cut(s) 32, 1167, 2014
NsbI TGCGCA 1 cut(s) 1083
NsiI ATGCAT 1 cut(s) 1157
NspI RCATGY 1 cut(s) 259
NspV TTCGAA 1 cut(s) 1920
PagI TCATGA 1 cut(s) 670
PaqCI CACCTGC 2 cut(s) 98, 160
PciI ACATGT 1 cut(s) 255
PdmI GAANNNNTTC 2 cut(s) 135, 764
PfeI GAWTC 4 cut(s) 786, 908, 1472, 1661
PfoI TCCNGGA 1 cut(s) 2269
PleI GAGTC 4 cut(s) 583, 1174, 1219, 1558
PpsI GAGTC 4 cut(s) 583, 1174, 1219, 1558
Ppu21I YACGTR 1 cut(s) 326
PscI ACATGT 1 cut(s) 255
PshBI ATTAAT 1 cut(s) 12
Psp1406I AACGTT 1 cut(s) 1991
Psp6I CCWGG 1 cut(s) 2269
PspGI CCWGG 1 cut(s) 2269
PspN4I GGNNCC 2 cut(s) 394, 436
PstI CTGCAG 1 cut(s) 1003
PstNI CAGNNNCTG 2 cut(s) 1442, 1631
PsuI RGATCY 3 cut(s) 392, 604, 688
PvuII CAGCTG 5 cut(s) 611, 1052, 1442, 1478, 1667
RsaI GTAC 3 cut(s) 1395, 2097, 2120
RsaNI GTAC 3 cut(s) 1394, 2096, 2119
Sau3AI GATC 7 cut(s) 175, 303, 392, 604, 688, 2176, 2239
SchI GAGTC 4 cut(s) 584, 1175, 1220, 1559
ScrFI CCNGG 1 cut(s) 2271
SfaNI GCATC 7 cut(s) 161, 328, 485, 539, 1069, 1423, 1612
SfcI CTRYAG 1 cut(s) 999
SfuI TTCGAA 1 cut(s) 1920
SmlI CTYRAG 5 cut(s) 620, 947, 1482, 1671, 2153
SmoI CTYRAG 5 cut(s) 620, 947, 1482, 1671, 2153
SsiI CCGC 1 cut(s) 448
SspI AATATT 2 cut(s) 1060, 2256
StyD4I CCNGG 1 cut(s) 2269
StyI CCWWGG 2 cut(s) 81, 396
TaaI ACNGT 1 cut(s) 744
TaiI ACGT 4 cut(s) 328, 1514, 1994, 2011
TaqI TCGA 7 cut(s) 768, 1043, 1455, 1644, 1920, 2042, 2175
TatI WGTACW 3 cut(s) 1393, 2095, 2118
TfiI GAWTC 4 cut(s) 786, 908, 1472, 1661
TscAI CASTG 3 cut(s) 1276, 1842, 1981
TseFI GTSAC 3 cut(s) 32, 1167, 2014
Tsp45I GTSAC 3 cut(s) 32, 1167, 2014
TspRI CASTG 3 cut(s) 1276, 1842, 1981
Vha464I CTTAAG 1 cut(s) 620
VspI ATTAAT 1 cut(s) 12
XapI RAATTY 3 cut(s) 816, 1495, 1684
XceI RCATGY 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XmiI GTMKAC 2 cut(s) 322, 565
XmnI GAANNNNTTC 2 cut(s) 135, 764
Zsp2I ATGCAT 1 cut(s) 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.