Rh5CG136000

WPP domain-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001383
Physical Location & Seq
Forward (+)
11409904 .. 11412870
2967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG136000.1

Sequence Viewer

Length: 2085 bp
ATGGTTCACTTGTCAAAGGCATCAGTACATGAATGGCAGCTGGAGCAGGAGTTTAGAGCAAAAATTGAAGAGCTTGTGATGATGAATTGTATTTGGAGCGTTGAAGGAAACATGTGGGATTGCTTTTATAGTGCAAAAAATGTGAACTTGCATGGAAGGAAGAAGGAGATATCAAGTATACGCGATGAATTAGATGCTATTTCTAAATCACTATCTGTTTGTGACAATGGACAGCTATCTTCAGAGGGATCCTTGGAAGTTGAAGAAGAGAGTGGTAACGGTAATAAGGGTGCCGGTTCACACCCCAAGGTTTTGAACAATCTTAAATCATCATCATCATTACCATCACCAATAACAACAGCAACAACATCATCACCATCAGCATCATCATCTTCATCTCTTTGCGAGGAAAATGGTATACATGATGAGTTAGAAACAAATATGGAAGAAGATTTAGATCCTGCCTTGCTTAAGCATATGAAGAAAGAAGAATTGATAAGCCATTGTAAGAGTAAGATTACTAAATTGAAGAGAAACCATGAGTTAGAAGTACAAGATCTGACTGAGCAGCATTTCGGCCACATGAGGGAAGTGCTGAGAGAAAGGAGATTCTCTTTAACATTGGAGAAGAATAAGGAGTTCGATATGTTGAGAAAGAGAATCTCTGAGGTGGTTTCTAAAGTAGATGAAATTCTTGTAGAAAAGGAGGAAGTAGCTACATTGCTTCCTCATACATTTGGCAGCAATGAAGAAAGTCTCAGCAGTTTGAAAGATGGAGTGGAATCACTCCTCTCAGAAAACCACCAACTCAGAGATTTGCTTGAAGATAAGAATGGACAAATTAAGTGCCTTTCACTACAAGATTCTGAAGCTGCAAAGAACCGGTCACAACACTCTCTGGCTGAGGCAAAGTTATTGAAAACAGTTGGAAATGTTAAAGCAGCTATGGAAGATGCGCATATTGAAGCTTTAATTGGTGAAGATTTATTTTCTTGTATTGTCAGGGAAGTGGTGGATGAGATTAAATGCATTGCTGAAGAGTCACAGGTGGAGAACAGTACTAAGCATGAAATTTACAAAAGCAAATTCAAAGAAGCTTCTCATGAAGCTGAACTTGCTACCAAACGTGAATTGGAAGATTTGGATATGGAGTCCATCATCACGCAAGAAGTATGTGGTGTTATATTCAAAGATGCTTTGAAGAATGCAGAAGAGAAACTCAATGAGCTGAACATTAAATATATTGAGGAATATGATCATCGGGTTTTGCAGGAGATGGACAAACGAGAAAAGGAAAAACAATTAGAAGTGGAGGTTGCAAACAAAGTGAGATTACAGCAAGAAGTACATTTTCTGGTAGAAGAAAAGGAGCAGTTGGCACGAGATGCAGCAGCTGCATTGGAAATCGAAAAAGAAATATATGAATTAGCTGCTCAAGAGGTTGAAAATTTAAGGGGTGAGACGTTTCAACATCAGAAATTGATTTCAGAAAGCGTTGAAGAGTCAAATGCTGCAAAGAGTGATTTGGTTGAGGCGTTGGAGCAAAATGAAAGACACAGGGCAGACATTTGTGTGTTAGAACAAAAGCTTGAAGCAGTAAGGGGTGAGACGTTTCCACATCAGAAATTGATTTCAGAAAGCGTTGAAGAGTCAAATGCTGCAAAGCGTGATTTGGTTGAGGCGTTGGAGCAAAATGAAAGACACAGGGCAGACATATGTGTGTTAGAACAAAAGCTTGGAGCAGCAGTGAAAGAGTTGAGGCAAGCTGAGGAAGATTTCTATCAACAGAAGCAGATTGCTGTATCATTGTTCGAAGCAAAAGAAAGGGAGCTTAGCGAGAAATTTGAATCAATAGCTGTCTATATCCGTGAATTATTGAAAGCGTTCACTGATTTTGAATGTAGAGTGACACGAGATATTTCAGAGAAATGTTCGAGGTTGAAAAGTTTGACTTCTCAATCACATTTGCTTAAACAAAAAGCTGACGTACTTGTAAGACGAGGATTGCTGTACAAGCAAAGACTGGAAAAGAAATGTTCTGACCTTGAGAAAGCTGAAACTGAGGTATGGATATTAGACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
No domains found.

Protein Analysis

694

Amino Acids

79.22

Weight (kDa)

5.08

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 957
AccB1I GGYRCC 1 cut(s) 290
AccI GTMKAC 2 cut(s) 178, 418
AccII CGCG 1 cut(s) 183
AclWI GGATC 3 cut(s) 243, 256, 452
AcoI YGGCCR 1 cut(s) 577
AcsI RAATTY 5 cut(s) 690, 1071, 1085, 1447, 1841
AcuI CTGAAG 3 cut(s) 225, 888, 1056
AfaI GTAC 6 cut(s) 27, 552, 1060, 1347, 1989, 2012
AfiI CCNNNNNNNGG 1 cut(s) 586
AflII CTTAAG 1 cut(s) 470
AflIII ACRYGT 1 cut(s) 111
AgeI ACCGGT 1 cut(s) 882
AjuI GAANNNNNNNTTGG 4 cut(s) 957, 989, 1719, 1751
Alw26I GTCTC 3 cut(s) 761, 1454, 1601
AlwI GGATC 3 cut(s) 243, 256, 452
AlwNI CAGNNNCTG 1 cut(s) 1394
AoxI GGCC 1 cut(s) 577
ApoI RAATTY 5 cut(s) 690, 1071, 1085, 1447, 1841
ArsI GACNNNNNNTTYG 2 cut(s) 869, 901
AsiGI ACCGGT 1 cut(s) 882
Asp700I GAANNNNTTC 1 cut(s) 1883
AspLEI GCGC 1 cut(s) 958
AsuHPI GGTGA 5 cut(s) 339, 366, 989, 1469, 1616
AsuII TTCGAA 1 cut(s) 1812
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 290
BauI CACGAG 2 cut(s) 1380, 1911
BbvCI CCTCAGC 2 cut(s) 903, 1767
BccI CCATC 5 cut(s) 352, 385, 767, 1163, 1270
BclI TGATCA 1 cut(s) 1255
BcoDI GTCTC 3 cut(s) 761, 1454, 1601
BfrI CTTAAG 1 cut(s) 470
BglII AGATCT 1 cut(s) 556
BlpI GCTNAGC 1 cut(s) 1832
BmcAI AGTACT 1 cut(s) 1060
BmiI GGNNCC 2 cut(s) 250, 292
BmsI GCATC 6 cut(s) 29, 184, 392, 943, 1183, 1375
BpmI CTGGAG 1 cut(s) 62
Bpu10I CCTNAGC 2 cut(s) 903, 1767
Bpu1102I GCTNAGC 1 cut(s) 1832
Bpu14I TTCGAA 1 cut(s) 1812
BpuEI CTTGAG 2 cut(s) 1419, 2066
BsaBI GATNNNNATC 2 cut(s) 456, 1779
BsaJI CCNNGG 2 cut(s) 252, 306
BsaWI WCCGGW 1 cut(s) 882
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 1731, 1761
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse118I RCCGGY 2 cut(s) 293, 882
Bse1I ACTGG 1 cut(s) 2028
Bse3DI GCAATG 3 cut(s) 719, 751, 1029
Bse8I GATNNNNATC 2 cut(s) 456, 1779
BseDI CCNNGG 2 cut(s) 252, 306
BseGI GGATG 1 cut(s) 1021
BseJI GATNNNNATC 2 cut(s) 456, 1779
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMI GCAATG 3 cut(s) 719, 751, 1029
BseMII CTCAG 9 cut(s) 555, 587, 657, 772, 807, 823, 894, 1758, 2052
BseNI ACTGG 1 cut(s) 2028
BseRI GAGGAG 1 cut(s) 779
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 579
BshNI GGYRCC 1 cut(s) 290
BshTI ACCGGT 1 cut(s) 882
BsiSI CCGG 2 cut(s) 294, 883
BslI CCNNNNNNNGG 1 cut(s) 586
BsmAI GTCTC 3 cut(s) 761, 1454, 1601
BsmBI CGTCTC 2 cut(s) 1454, 1601
BsmI GAATGC 1 cut(s) 1210
BsnI GGCC 1 cut(s) 579
Bsp119I TTCGAA 1 cut(s) 1812
Bsp1407I TGTACA 1 cut(s) 2010
Bsp143I GATC 4 cut(s) 248, 457, 556, 1255
Bsp1720I GCTNAGC 1 cut(s) 1832
BspANI GGCC 1 cut(s) 579
BspCNI CTCAG 9 cut(s) 556, 588, 658, 771, 806, 822, 895, 1759, 2053
BspFNI CGCG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 1102
BspLI GGNNCC 2 cut(s) 250, 292
BspPI GGATC 3 cut(s) 243, 256, 452
BspQI GCTCTTC 1 cut(s) 63
BspT104I TTCGAA 1 cut(s) 1812
BspT107I GGYRCC 1 cut(s) 290
BspTI CTTAAG 1 cut(s) 470
BsrDI GCAATG 3 cut(s) 719, 751, 1029
BsrFI RCCGGY 2 cut(s) 293, 882
BsrGI TGTACA 1 cut(s) 2010
BsrI ACTGG 1 cut(s) 2028
BssAI RCCGGY 2 cut(s) 293, 882
BssECI CCNNGG 2 cut(s) 252, 306
BssMI GATC 4 cut(s) 248, 457, 556, 1255
BssNAI GTATAC 2 cut(s) 179, 419
BssSI CACGAG 2 cut(s) 1380, 1911
BssT1I CCWWGG 2 cut(s) 252, 306
Bst1107I GTATAC 2 cut(s) 179, 419
Bst2BI CACGAG 2 cut(s) 1380, 1911
Bst4CI ACNGT 3 cut(s) 281, 925, 1058
Bst6I CTCTTC 7 cut(s) 63, 261, 524, 1032, 1206, 1494, 1641
BstAFI CTTAAG 1 cut(s) 470
BstAPI GCANNNNNTGC 2 cut(s) 1385, 1394
BstAUI TGTACA 1 cut(s) 2010
BstBI TTCGAA 1 cut(s) 1812
BstC8I GCNNGC 1 cut(s) 1764
BstF5I GGATG 1 cut(s) 1021
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 958
BstKTI GATC 4 cut(s) 251, 460, 559, 1258
BstMAI GTCTC 3 cut(s) 761, 1454, 1601
BstMBI GATC 4 cut(s) 248, 457, 556, 1255
BstMWI GCNNNNNNNGC 5 cut(s) 43, 1115, 1385, 1394, 2014
BstNSI RCATGY 1 cut(s) 115
BstUI CGCG 1 cut(s) 183
BstX2I RGATCY 3 cut(s) 248, 457, 556
BstYI RGATCY 3 cut(s) 248, 457, 556
BstZ17I GTATAC 2 cut(s) 179, 419
BsuRI GGCC 1 cut(s) 579
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 1021
BtsI GCAGTG 1 cut(s) 1752
BtsIMutI CAGTG 2 cut(s) 1752, 1887
Cac8I GCNNGC 1 cut(s) 1764
CaiI CAGNNNCTG 1 cut(s) 1394
CciI TCATGA 1 cut(s) 1102
CfoI GCGC 1 cut(s) 958
Cfr10I RCCGGY 2 cut(s) 293, 882
Csp6I GTAC 6 cut(s) 26, 551, 1059, 1346, 1988, 2011
CspAI ACCGGT 1 cut(s) 882
CviAII CATG 8 cut(s) 29, 112, 152, 422, 539, 583, 1067, 1103
CviQI GTAC 6 cut(s) 26, 551, 1059, 1346, 1988, 2011
DpnI GATC 4 cut(s) 250, 459, 558, 1257
DpnII GATC 4 cut(s) 248, 457, 556, 1255
EaeI YGGCCR 1 cut(s) 577
Eam1104I CTCTTC 7 cut(s) 63, 261, 524, 1032, 1206, 1494, 1641
EarI CTCTTC 7 cut(s) 63, 261, 524, 1032, 1206, 1494, 1641
Eco130I CCWWGG 2 cut(s) 252, 306
Eco32I GATATC 1 cut(s) 171
Eco57I CTGAAG 3 cut(s) 225, 888, 1056
EcoRV GATATC 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 252, 306
EcoT22I ATGCAT 1 cut(s) 1031
ErhI CCWWGG 2 cut(s) 252, 306
Esp3I CGTCTC 2 cut(s) 1454, 1601
FaeI CATG 8 cut(s) 32, 115, 155, 425, 542, 586, 1070, 1106
FalI AAGNNNNNCTT 4 cut(s) 1098, 1130, 1936, 1968
FatI CATG 8 cut(s) 28, 111, 151, 421, 538, 582, 1066, 1102
FauNDI CATATG 2 cut(s) 477, 1715
FbaI TGATCA 1 cut(s) 1255
FblI GTMKAC 2 cut(s) 178, 418
FokI GGATG 1 cut(s) 1028
FspAI RTGCGCAY 1 cut(s) 957
FspI TGCGCA 1 cut(s) 957
GlaI GCGC 1 cut(s) 957
GsuI CTGGAG 1 cut(s) 62
HaeIII GGCC 1 cut(s) 579
HapII CCGG 2 cut(s) 294, 883
HhaI GCGC 1 cut(s) 958
Hin1II CATG 8 cut(s) 32, 115, 155, 425, 542, 586, 1070, 1106
Hin6I GCGC 1 cut(s) 956
HinP1I GCGC 1 cut(s) 956
HindIII AAGCTT 4 cut(s) 966, 1095, 1586, 1733
HinfI GANTC 9 cut(s) 609, 660, 782, 863, 1040, 1151, 1502, 1649, 1847
HpaII CCGG 2 cut(s) 294, 883
HphI GGTGA 5 cut(s) 339, 366, 989, 1469, 1616
Hpy166II GTNNAC 6 cut(s) 7, 145, 179, 299, 419, 1887
Hpy188III TCNNGA 2 cut(s) 1103, 1436
Hpy8I GTNNAC 6 cut(s) 7, 145, 179, 299, 419, 1887
HpyAV CCTTC 3 cut(s) 98, 150, 157
HpyCH4III ACNGT 3 cut(s) 281, 925, 1058
HpyCH4IV ACGT 4 cut(s) 1126, 1463, 1610, 1986
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 1115, 1385, 1394, 2014
HpySE526I ACGT 4 cut(s) 1126, 1463, 1610, 1986
Hsp92II CATG 8 cut(s) 32, 115, 155, 425, 542, 586, 1070, 1106
HspAI GCGC 1 cut(s) 956
Ksp22I TGATCA 1 cut(s) 1255
Kzo9I GATC 4 cut(s) 248, 457, 556, 1255
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 7 cut(s) 43, 96, 1369, 1540, 1687, 1739, 1828
LweI GCATC 6 cut(s) 29, 184, 392, 943, 1183, 1375
MaeII ACGT 4 cut(s) 1126, 1463, 1610, 1986
MaeIII GTNAC 5 cut(s) 221, 275, 885, 1041, 1906
MalI GATC 4 cut(s) 250, 459, 558, 1257
MboI GATC 4 cut(s) 248, 457, 556, 1255
MflI RGATCY 3 cut(s) 248, 457, 556
MlyI GAGTC 4 cut(s) 1049, 1160, 1511, 1658
MmeI TCCRAC 3 cut(s) 907, 1518, 1665
Mph1103I ATGCAT 1 cut(s) 1031
MroXI GAANNNNTTC 1 cut(s) 1883
MslI CAYNNNNRTG 2 cut(s) 1571, 1718
MspA1I CMGCKG 2 cut(s) 40, 1394
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 2 cut(s) 294, 883
Mva1269I GAATGC 1 cut(s) 1210
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 5 cut(s) 43, 1115, 1385, 1394, 2014
NdeI CATATG 2 cut(s) 477, 1715
NdeII GATC 4 cut(s) 248, 457, 556, 1255
NlaIII CATG 8 cut(s) 32, 115, 155, 425, 542, 586, 1070, 1106
NlaIV GGNNCC 2 cut(s) 250, 292
NmuCI GTSAC 4 cut(s) 221, 885, 1041, 1906
NsbI TGCGCA 1 cut(s) 957
NsiI ATGCAT 1 cut(s) 1031
NspI RCATGY 1 cut(s) 115
NspV TTCGAA 1 cut(s) 1812
PagI TCATGA 1 cut(s) 1102
PciI ACATGT 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 63
PctI GAATGC 1 cut(s) 1210
PdmI GAANNNNTTC 1 cut(s) 1883
PfeI GAWTC 5 cut(s) 609, 660, 782, 863, 1847
PinAI ACCGGT 1 cut(s) 882
PleI GAGTC 4 cut(s) 1048, 1159, 1510, 1657
PpsI GAGTC 4 cut(s) 1048, 1159, 1510, 1657
PscI ACATGT 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 250, 292
PstNI CAGNNNCTG 1 cut(s) 1394
PsuI RGATCY 3 cut(s) 248, 457, 556
PvuII CAGCTG 2 cut(s) 40, 1394
RsaI GTAC 6 cut(s) 27, 552, 1060, 1347, 1989, 2012
RsaNI GTAC 6 cut(s) 26, 551, 1059, 1346, 1988, 2011
RseI CAYNNNNRTG 2 cut(s) 1571, 1718
SapI GCTCTTC 1 cut(s) 63
Sau3AI GATC 4 cut(s) 248, 457, 556, 1255
ScaI AGTACT 1 cut(s) 1060
SchI GAGTC 4 cut(s) 1049, 1160, 1511, 1658
SfaNI GCATC 6 cut(s) 29, 184, 392, 943, 1183, 1375
SfuI TTCGAA 1 cut(s) 1812
SmiMI CAYNNNNRTG 2 cut(s) 1571, 1718
SmlI CTYRAG 3 cut(s) 470, 1434, 2045
SmoI CTYRAG 3 cut(s) 470, 1434, 2045
StyI CCWWGG 2 cut(s) 252, 306
TaaI ACNGT 3 cut(s) 281, 925, 1058
TaiI ACGT 4 cut(s) 1129, 1466, 1613, 1989
TaqI TCGA 4 cut(s) 642, 1407, 1812, 1934
TatI WGTACW 5 cut(s) 25, 550, 1058, 1345, 2010
TfiI GAWTC 5 cut(s) 609, 660, 782, 863, 1847
TscAI CASTG 2 cut(s) 1752, 1894
TseFI GTSAC 4 cut(s) 221, 885, 1041, 1906
Tsp45I GTSAC 4 cut(s) 221, 885, 1041, 1906
TspGWI ACGGA 1 cut(s) 1856
TspRI CASTG 2 cut(s) 1752, 1894
Vha464I CTTAAG 1 cut(s) 470
XapI RAATTY 5 cut(s) 690, 1071, 1085, 1447, 1841
XceI RCATGY 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 1129
XmiI GTMKAC 2 cut(s) 178, 418
XmnI GAANNNNTTC 1 cut(s) 1883
ZrmI AGTACT 1 cut(s) 1060
Zsp2I ATGCAT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.