Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015959.1

Orthogroup ID

OG0001383

Physical Location & Seq

Genomic Coordinates Reverse (-)

3909 .. 4595

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015959.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggagattttagaagtcatggataatgatgttaaatcgtgcaatggtgggatggagagtttagaggtcatgcgtaatggttttcaatcatgcaatggtttgttggtgcagcataattatagtgtgaaagaaaatgagaatccggatgttgatcttcttgaggatttggactcttacatggaagatatcaacgaacggttgaccatatcaaggatggtgagtgacacggtcatcaagggtatggtgaatgcagtaacagaagaggcagctgagaaaattgctcagaaagaacaagaggtgactaaattgaaggaaatgttacatatttatcacgtgggtgttcatgagaacgaattctcggggtctttagtaatgctccgagagtcaagaggtacccaacacggacttactcatatgggtagcaaagatcgaacgcagcagcctacttcatttgaagctgttgctggtcatgatagaatagcagaaactttggtccacttaagagggactactaatgaggaattcaagaagctcaaaaaagaaattgatagcattagagggcgtaattcaatgaagaggattaattccagttctggtttgggtggcgtactgcaagataaagtatctgacaggtgggatgtggatagaaccttggatagtctaaagactacaatagaaagtgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

25.68

Weight (kDa)

5.16

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34730 AT2G34730
fragaria_vesca	FvH4_3g10170 FvH4_3g10170 FvH4_3g10170 FvH4_3g10170 FvH4_3g10170 FvH4_3g10170
malus_domestica	MD05G1272600.v1.1 MD05G1272700.v1.1 MD10G1252800.v1.1
prunus_persica	Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.6G009000_v2.0.a1 Prupe.6G009100_v2.0.a1 Prupe.6G066700_v2.0.a1
pyrus_communis	pycom10g20850
rosa_chinensis	RchiOBHm_Chr5g0016081 RchiOBHm_Chr5g0016211 RchiOBHm_Chr5g0016261
rosa_laevigata	RLG00000032239 RLG00000032244
rosa_multiflora	Rmu_co7978980.1_g000001 Rmu_co8206716.1_g000001 Rmu_sc0000299.1_g000011 Rmu_sc0005506.1_g000012 Rmu_sc0007230.1_g000007 Rmu_sc0015959.1_g000001 Rmu_sc0015959.1_g000002 Rmu_sc0015959.1_g000016
rosa_roxburghii	Rroxscaffold_1G00060550 Rroxscaffold_1G00060580
rosa_rugosa	Rorug05G0031100 Rorug05G0031500 Rorug05G0031600 Rorug05G0031700
rosa_samantha	Rh5AG124500 Rh5AG124700 Rh5AG124800 Rh5BG123500 Rh5BG123700 Rh5CG135100 Rh5CG135600 Rh5CG136000 Rh5DG122800 Rh5DG123200 Rh5DG123500
rosa_wichuraiana	Rw5G010790 Rw5G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AccIII	TCCGGA	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	353, 521
AcvI	CACGTG	1 cut(s)	334
AfaI	GTAC	2 cut(s)	394, 609
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflII	CTTAAG	1 cut(s)	499
AgsI	TTSAA	5 cut(s)	86, 310, 455, 526, 570
AleI	CACNNNNGTG	1 cut(s)	336
AluBI	AGCT	3 cut(s)	269, 458, 532
AluI	AGCT	3 cut(s)	269, 458, 532
Ama87I	CYCGRG	1 cut(s)	358
Aor13HI	TCCGGA	1 cut(s)	142
ApeKI	GCWGC	4 cut(s)	109, 266, 436, 439
ApoI	RAATTY	2 cut(s)	353, 521
AseI	ATTAAT	1 cut(s)	582
Asp700I	GAANNNNTTC	1 cut(s)	353
Asp718I	GGTACC	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	3 cut(s)	229, 256, 310
AvaI	CYCGRG	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	493
BanI	GGYRCC	1 cut(s)	392
BbrPI	CACGTG	1 cut(s)	334
BbvI	GCAGC	4 cut(s)	121, 278, 448, 451
BccI	CCATC	2 cut(s)	46, 208
BfrI	CTTAAG	1 cut(s)	499
BisI	GCNGC	4 cut(s)	110, 267, 437, 440
BlsI	GCNGC	4 cut(s)	111, 268, 438, 441
Bme18I	GGWCC	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	651
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	588
Bse3DI	GCAATG	2 cut(s)	49, 100
Bse8I	GATNNNNATC	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	4 cut(s)	57, 151, 219, 643
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMI	GCAATG	2 cut(s)	49, 100
BseMII	CTCAG	2 cut(s)	261, 296
BseNI	ACTGG	1 cut(s)	588
BseXI	GCAGC	4 cut(s)	121, 278, 448, 451
BsgI	GTGCAG	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	392
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	520
BsmI	GAATGC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	358
Bsp13I	TCCGGA	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	151, 427
BspCNI	CTCAG	2 cut(s)	262, 295
BspEI	TCCGGA	1 cut(s)	142
BspHI	TCATGA	2 cut(s)	343, 469
BspLI	GGNNCC	1 cut(s)	394
BspT107I	GGYRCC	1 cut(s)	392
BspTI	CTTAAG	1 cut(s)	499
BsrDI	GCAATG	2 cut(s)	49, 100
BsrI	ACTGG	1 cut(s)	588
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	2 cut(s)	151, 427
BssT1I	CCWWGG	1 cut(s)	651
Bst4CI	ACNGT	2 cut(s)	198, 229
Bst6I	CTCTTC	2 cut(s)	255, 569
BstAFI	CTTAAG	1 cut(s)	499
BstBAI	YACGTR	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	270, 282
BstF5I	GGATG	4 cut(s)	57, 151, 219, 643
BstKTI	GATC	2 cut(s)	154, 430
BstMBI	GATC	2 cut(s)	151, 427
BstV1I	GCAGC	4 cut(s)	121, 278, 448, 451
BtsCI	GGATG	4 cut(s)	57, 151, 219, 643
CciI	TCATGA	2 cut(s)	343, 469
Cfr13I	GGNCC	1 cut(s)	493
Csp6I	GTAC	2 cut(s)	393, 608
CviAII	CATG	6 cut(s)	19, 70, 90, 178, 344, 470
CviJI	RGCY	4 cut(s)	269, 442, 458, 532
CviKI_1	RGCY	4 cut(s)	269, 442, 458, 532
CviQI	GTAC	2 cut(s)	393, 608
DdeI	CTNAG	2 cut(s)	270, 282
DpnI	GATC	2 cut(s)	153, 429
DpnII	GATC	2 cut(s)	151, 427
Eam1104I	CTCTTC	2 cut(s)	255, 569
EarI	CTCTTC	2 cut(s)	255, 569
Eco130I	CCWWGG	1 cut(s)	651
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	493
Eco72I	CACGTG	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	358
EcoRI	GAATTC	2 cut(s)	353, 521
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	6 cut(s)	22, 73, 93, 181, 347, 473
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	6 cut(s)	18, 69, 89, 177, 343, 469
FauNDI	CATATG	1 cut(s)	414
Fnu4HI	GCNGC	4 cut(s)	110, 267, 437, 440
FokI	GGATG	4 cut(s)	64, 158, 226, 650
Fsp4HI	GCNGC	4 cut(s)	110, 267, 437, 440
GluI	GCNGC	4 cut(s)	110, 267, 437, 440
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	6 cut(s)	22, 73, 93, 181, 347, 473
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	3 cut(s)	139, 170, 383
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	3 cut(s)	229, 256, 310
Hpy166II	GTNNAC	2 cut(s)	201, 496
Hpy188I	TCNGA	3 cut(s)	285, 380, 628
Hpy188III	TCNNGA	6 cut(s)	143, 158, 344, 387, 470, 526
Hpy8I	GTNNAC	2 cut(s)	201, 496
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	2 cut(s)	198, 229
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	5 cut(s)	42, 93, 109, 251, 613
HpyF3I	CTNAG	2 cut(s)	270, 282
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	6 cut(s)	22, 73, 93, 181, 347, 473
Kpn2I	TCCGGA	1 cut(s)	142
KpnI	GGTACC	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	151, 427
LmnI	GCTCC	1 cut(s)	381
LpnPI	CCDG	5 cut(s)	156, 450, 579, 601, 616
Lsp1109I	GCAGC	4 cut(s)	121, 278, 448, 451
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	4 cut(s)	221, 253, 298, 318
MalI	GATC	2 cut(s)	153, 429
MboI	GATC	2 cut(s)	151, 427
MboII	GAAGA	4 cut(s)	146, 194, 272, 586
MluCI	AATT	8 cut(s)	115, 276, 305, 353, 521, 543, 565, 583
MlyI	GAGTC	2 cut(s)	164, 392
MnlI	CCTC	9 cut(s)	58, 154, 256, 289, 383, 497, 511, 551, 570
MroI	TCCGGA	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	3 cut(s)	33, 500, 582
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	269
MspCI	CTTAAG	1 cut(s)	499
MspI	CCGG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	253
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	2 cut(s)	151, 427
NlaIII	CATG	6 cut(s)	22, 73, 93, 181, 347, 473
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	2 cut(s)	221, 298
OliI	CACNNNNGTG	1 cut(s)	336
PagI	TCATGA	2 cut(s)	343, 469
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	139
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	4 cut(s)	111, 268, 438, 441
PleI	GAGTC	2 cut(s)	164, 391
PmaCI	CACGTG	1 cut(s)	334
PmlI	CACGTG	1 cut(s)	334
PpsI	GAGTC	2 cut(s)	164, 391
Ppu21I	YACGTR	1 cut(s)	334
PshBI	ATTAAT	1 cut(s)	582
PspCI	CACGTG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	1 cut(s)	493
PsyI	GACNNNGTC	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	394, 609
RsaNI	GTAC	2 cut(s)	393, 608
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	33, 500, 582
SatI	GCNGC	4 cut(s)	110, 267, 437, 440
Sau3AI	GATC	2 cut(s)	151, 427
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	2 cut(s)	164, 392
SetI	ASST	9 cut(s)	69, 271, 300, 336, 394, 460, 534, 635, 653
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	2 cut(s)	158, 499
SmoI	CTYRAG	2 cut(s)	158, 499
Sse9I	AATT	8 cut(s)	115, 276, 305, 353, 521, 543, 565, 583
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	198, 229
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	1 cut(s)	430
TasI	AATT	8 cut(s)	115, 276, 305, 353, 521, 543, 565, 583
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	3 cut(s)	33, 500, 582
Tru9I	TTAA	3 cut(s)	33, 500, 582
TseFI	GTSAC	2 cut(s)	221, 298
TseI	GCWGC	4 cut(s)	109, 266, 436, 439
Tsp45I	GTSAC	2 cut(s)	221, 298
TspDTI	ATGAA	3 cut(s)	332, 438, 587
TspGWI	ACGGA	1 cut(s)	417
Tth111I	GACNNNGTC	1 cut(s)	227
Vha464I	CTTAAG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	493
VspI	ATTAAT	1 cut(s)	582
XapI	RAATTY	2 cut(s)	353, 521
XcmI	CCANNNNNNNNNTGG	2 cut(s)	211, 595
XmnI	GAANNNNTTC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.