Rh5DG123500

WPP domain-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001383
Physical Location & Seq
Forward (+)
11232514 .. 11235099
2586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG123500.1

Sequence Viewer

Length: 1578 bp
ATGGAAGATGCGCATATTGAAGCTTTAATTGGTGAAGATTTATTTTCTGGTATTGTCAGGGAAGTGGTGGATGAGATTAAATGCATTGCTGAAGAGTCACAGGTGGAGAATAGTACTAAGCATGAAATTTACAAAAGCAAATTCAAAGAAGCTTCTCATGAAGCTGAACTTGCTACCAAACGTGAATTGGAAGATTTGGAAACGGAGTCCATCATCACGCAAGAAGTATGTGGTGTTATATTCAAAGACGCTTTGAAGATTGCAGAGGAGAAACTCAATGAGCTGAACATTAAATATATTGAGGAATATGAACATCGGGTTTTGCAGGAGATGGACAAACGAGAAAAGGAAAAACAATTAGAAGTGGAGGTTGCAAACAAAGTGAGATTACAGCAAGAAGTACATTTTCTGGTCGAAGAAAAGGAGCAGTTGGCACGAGATGCAGCAGCTGCATTGGAAATCGAAAAAGAAAGATATGAATTAGCTGCTCAAGAGGTTGAAAATTTAAGGGGTGAGACTTGTCCACATCAAAAATTGATTTCAGAAAGCGTTGAAGAGTCAAATGCTGCAAAGCGTGATTTGGTTGAGGCGTTGGAGCAAAATGAAAGACACAGGGCAGACATATGTGTGTTAGAACAAAAGCTTGAAGCAGTAAGGGGTGAGACGTTTCAACATCAGAAATTGATTTCAGAAAGCGTTGAAGAGTCAAATGCTGCAAAGCATGATTTGGTCGAGGCGTTGGAGCAAAATGAAAGACACAGGGCAGACATATGTGTGTTAGAACAAAAGCTTGGAGCAGCAGTGAAAGAGTTGAGGCAAGCTGAGGAAGATTTCTATCAACAGAAGCAGATTGCTGTATCATTGTTCGAAGCAAAAGAAAGGGAGCTTAGCGAGAAATTTGAATCAATAGCTGTCTATATCCGTGAATTATTGAAAGCGTTCACTGATTTTGAATGTAGAGTGACACGAGATATTTCAGAGAAATGTTCGAGGTTGAAAAGTTTGACTTCTCAATCACATTTGCTTAAACAAAAAGCTGATGTACTTGTAAGACGAGGATTGCTGTACAAGCAAAGACTGGAAAAGAAATGTTCTGACCTTCAGAAAGCTGAAACTGAGATAAACTCGCCTCACACCCCAACCTACTCCTCCATCACCTCCCCTACCCCAAACCCCATTTTACCACCATCATCTGATGACCCCTTGCCTCTCCCGCCCACTGTGGTTCTCAGTATTTCATCTTACTTGGAGCGCCTGCGTTTAAAGAGATCGGTGATTGAGACTGTGGTTAATGAGGATCTGGAATTCCAAACTCATTCTAAACGCCCCCGGCGTCTGCTCGAATCGCTCCACCTGCTCAGAGTTCACACCCTACTGCTTTTCCTCCTCAACAAGAAGAACTTGGAGACCCACCTGTTCCAATTCGACAAGCAGAGCATGGAGTTCCGCCCACTCCTCTGGTCCGTCGCACTCGTCGACCTCGACAACCCGGCGGTTCACGGGCTTCTACTTCGGCCCCCCGTGCTCGGGGTGGCCGTGGCCGCGGGTCTCGAGCACGCCAAGCAACGGTCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
No domains found.

Protein Analysis

525

Amino Acids

60.39

Weight (kDa)

5.32

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1362
Acc16I TGCGCA 1 cut(s) 12
Acc36I ACCTGC 1 cut(s) 1362
AccI GTMKAC 1 cut(s) 1476
AccII CGCG 1 cut(s) 1544
AciI CCGC 5 cut(s) 1214, 1447, 1493, 1542, 1544
AclWI GGATC 1 cut(s) 1305
AcoI YGGCCR 2 cut(s) 1533, 1539
AcsI RAATTY 5 cut(s) 126, 140, 502, 896, 1304
AcuI CTGAAG 2 cut(s) 111, 1085
AcyI GRCGYC 1 cut(s) 1333
AfaI GTAC 4 cut(s) 115, 402, 1044, 1067
AfiI CCNNNNNNNGG 3 cut(s) 1526, 1527, 1566
AjuI GAANNNNNNNTTGG 4 cut(s) 12, 44, 774, 806
Alw21I GWGCWC 2 cut(s) 1527, 1557
Alw26I GTCTC 5 cut(s) 509, 656, 1274, 1400, 1553
AlwI GGATC 1 cut(s) 1305
AlwNI CAGNNNCTG 1 cut(s) 449
Ama87I CYCGRG 2 cut(s) 1526, 1550
AoxI GGCC 3 cut(s) 1514, 1533, 1539
ApeKI GCWGC 7 cut(s) 443, 446, 449, 485, 566, 713, 797
ApoI RAATTY 5 cut(s) 126, 140, 502, 896, 1304
Asp700I GAANNNNTTC 1 cut(s) 938
AspLEI GCGC 2 cut(s) 13, 1254
AspS9I GGNCC 2 cut(s) 1461, 1515
AsuC2I CCSGG 2 cut(s) 1330, 1490
AsuHPI GGTGA 5 cut(s) 44, 524, 671, 1147, 1285
AsuII TTCGAA 1 cut(s) 867
AvaI CYCGRG 2 cut(s) 1526, 1550
AvaII GGWCC 1 cut(s) 1461
BauI CACGAG 2 cut(s) 435, 966
Bbv12I GWGCWC 2 cut(s) 1527, 1557
BbvCI CCTCAGC 1 cut(s) 822
BbvI GCAGC 7 cut(s) 436, 455, 458, 472, 553, 700, 809
BccI CCATC 4 cut(s) 218, 325, 1160, 1195
BceAI ACGGC 1 cut(s) 1520
BcnI CCSGG 2 cut(s) 1330, 1490
BcoDI GTCTC 5 cut(s) 509, 656, 1274, 1400, 1553
BfoI RGCGCY 1 cut(s) 1255
BfuAI ACCTGC 1 cut(s) 1362
BisI GCNGC 8 cut(s) 444, 447, 450, 486, 567, 714, 798, 1542
BlpI GCTNAGC 1 cut(s) 887
BlsI GCNGC 8 cut(s) 445, 448, 451, 487, 568, 715, 799, 1543
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 1330, 1490
Bme18I GGWCC 1 cut(s) 1461
BmeT110I CYCGRG 2 cut(s) 1526, 1550
BmgT120I GGNCC 2 cut(s) 1461, 1515
BmiI GGNNCC 1 cut(s) 1517
BmrFI CCNGG 2 cut(s) 1330, 1490
BmsI GCATC 1 cut(s) 430
BplI GAGNNNNNCTC 2 cut(s) 1109, 1141
Bpu10I CCTNAGC 1 cut(s) 822
Bpu1102I GCTNAGC 1 cut(s) 887
Bpu14I TTCGAA 1 cut(s) 867
BpuEI CTTGAG 1 cut(s) 474
BpuMI CCSGG 2 cut(s) 1330, 1490
BsaBI GATNNNNATC 1 cut(s) 834
BsaHI GRCGYC 1 cut(s) 1333
BsaI GGTCTC 2 cut(s) 1400, 1553
BsaJI CCNNGG 3 cut(s) 1328, 1536, 1542
BsaXI ACNNNNNCTCC 2 cut(s) 786, 816
Bsc4I CCNNNNNNNGG 3 cut(s) 1526, 1527, 1566
Bse1I ACTGG 1 cut(s) 1083
Bse3DI GCAATG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 834
BseDI CCNNGG 3 cut(s) 1328, 1536, 1542
BseGI GGATG 1 cut(s) 76
BseJI GATNNNNATC 1 cut(s) 834
BseLI CCNNNNNNNGG 3 cut(s) 1526, 1527, 1566
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 4 cut(s) 813, 1107, 1243, 1372
BseNI ACTGG 1 cut(s) 1083
BseRI GAGGAG 4 cut(s) 281, 1138, 1376, 1445
BseXI GCAGC 7 cut(s) 436, 455, 458, 472, 553, 700, 809
Bsh1236I CGCG 1 cut(s) 1544
BshFI GGCC 3 cut(s) 1516, 1535, 1541
BsiHKAI GWGCWC 2 cut(s) 1527, 1557
BsiHKCI CYCGRG 2 cut(s) 1526, 1550
BsiSI CCGG 2 cut(s) 1330, 1490
BslI CCNNNNNNNGG 3 cut(s) 1526, 1527, 1566
BsmAI GTCTC 5 cut(s) 509, 656, 1274, 1400, 1553
BsmBI CGTCTC 1 cut(s) 656
BsnI GGCC 3 cut(s) 1516, 1535, 1541
Bso31I GGTCTC 2 cut(s) 1400, 1553
BsoBI CYCGRG 2 cut(s) 1526, 1550
Bsp119I TTCGAA 1 cut(s) 867
Bsp1286I GDGCHC 2 cut(s) 1527, 1557
Bsp1407I TGTACA 1 cut(s) 1065
Bsp143I GATC 2 cut(s) 1268, 1297
Bsp1720I GCTNAGC 1 cut(s) 887
BspACI CCGC 5 cut(s) 1214, 1447, 1493, 1542, 1544
BspANI GGCC 3 cut(s) 1516, 1535, 1541
BspCNI CTCAG 4 cut(s) 814, 1108, 1242, 1371
BspFNI CGCG 1 cut(s) 1544
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 1517
BspMI ACCTGC 1 cut(s) 1362
BspPI GGATC 1 cut(s) 1305
BspT104I TTCGAA 1 cut(s) 867
BspTNI GGTCTC 2 cut(s) 1400, 1553
BsrDI GCAATG 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 1065
BsrI ACTGG 1 cut(s) 1083
BssECI CCNNGG 3 cut(s) 1328, 1536, 1542
BssMI GATC 2 cut(s) 1268, 1297
BssNI GRCGYC 1 cut(s) 1333
BssSI CACGAG 2 cut(s) 435, 966
Bst2BI CACGAG 2 cut(s) 435, 966
Bst4CI ACNGT 4 cut(s) 1222, 1285, 1569, 1575
Bst6I CTCTTC 3 cut(s) 87, 549, 696
BstACI GRCGYC 1 cut(s) 1333
BstAPI GCANNNNNTGC 2 cut(s) 440, 449
BstAUI TGTACA 1 cut(s) 1065
BstBI TTCGAA 1 cut(s) 867
BstC8I GCNNGC 3 cut(s) 819, 1256, 1557
BstDEI CTNAG 6 cut(s) 117, 822, 887, 1116, 1229, 1358
BstDSI CCRYGG 2 cut(s) 1536, 1542
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 1544
BstH2I RGCGCY 1 cut(s) 1255
BstHHI GCGC 2 cut(s) 13, 1254
BstKTI GATC 2 cut(s) 1271, 1300
BstMAI GTCTC 5 cut(s) 509, 656, 1274, 1400, 1553
BstMBI GATC 2 cut(s) 1268, 1297
BstSCI CCNGG 2 cut(s) 1328, 1488
BstUI CGCG 1 cut(s) 1544
BstV1I GCAGC 7 cut(s) 436, 455, 458, 472, 553, 700, 809
BstX2I RGATCY 1 cut(s) 1297
BstXI CCANNNNNNTGG 1 cut(s) 1458
BstYI RGATCY 1 cut(s) 1297
BsuRI GGCC 3 cut(s) 1516, 1535, 1541
BtgI CCRYGG 2 cut(s) 1536, 1542
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 3 cut(s) 807, 942, 1218
BveI ACCTGC 1 cut(s) 1362
Cac8I GCNNGC 3 cut(s) 819, 1256, 1557
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 157
CfoI GCGC 2 cut(s) 13, 1254
Cfr13I GGNCC 2 cut(s) 1461, 1515
Cfr42I CCGCGG 1 cut(s) 1545
CseI GACGC 2 cut(s) 257, 1322
Csp6I GTAC 4 cut(s) 114, 401, 1043, 1066
CviAII CATG 4 cut(s) 122, 158, 722, 1438
CviQI GTAC 4 cut(s) 114, 401, 1043, 1066
DdeI CTNAG 6 cut(s) 117, 822, 887, 1116, 1229, 1358
DpnI GATC 2 cut(s) 1270, 1299
DpnII GATC 2 cut(s) 1268, 1297
DraI TTTAAA 1 cut(s) 1263
EaeI YGGCCR 2 cut(s) 1533, 1539
Eam1104I CTCTTC 3 cut(s) 87, 549, 696
EarI CTCTTC 3 cut(s) 87, 549, 696
EciI GGCGGA 1 cut(s) 1436
Eco31I GGTCTC 2 cut(s) 1400, 1553
Eco47I GGWCC 1 cut(s) 1461
Eco57I CTGAAG 2 cut(s) 111, 1085
Eco88I CYCGRG 2 cut(s) 1526, 1550
EcoRI GAATTC 1 cut(s) 1304
EcoT22I ATGCAT 1 cut(s) 86
Esp3I CGTCTC 1 cut(s) 656
FaeI CATG 4 cut(s) 125, 161, 725, 1441
FalI AAGNNNNNCTT 6 cut(s) 153, 185, 991, 1023, 1385, 1417
FatI CATG 4 cut(s) 121, 157, 721, 1437
FauI CCCGC 2 cut(s) 1221, 1537
FauNDI CATATG 2 cut(s) 623, 770
FblI GTMKAC 1 cut(s) 1476
Fnu4HI GCNGC 8 cut(s) 444, 447, 450, 486, 567, 714, 798, 1542
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 8 cut(s) 444, 447, 450, 486, 567, 714, 798, 1542
FspAI RTGCGCAY 1 cut(s) 12
FspI TGCGCA 1 cut(s) 12
GlaI GCGC 2 cut(s) 12, 1253
GluI GCNGC 8 cut(s) 444, 447, 450, 486, 567, 714, 798, 1542
HaeII RGCGCY 1 cut(s) 1255
HaeIII GGCC 3 cut(s) 1516, 1535, 1541
HapII CCGG 2 cut(s) 1330, 1490
HgaI GACGC 2 cut(s) 257, 1322
HhaI GCGC 2 cut(s) 13, 1254
Hin1I GRCGYC 1 cut(s) 1333
Hin1II CATG 4 cut(s) 125, 161, 725, 1441
Hin6I GCGC 2 cut(s) 11, 1252
HinP1I GCGC 2 cut(s) 11, 1252
HincII GTYRAC 1 cut(s) 1477
HindII GTYRAC 1 cut(s) 1477
HindIII AAGCTT 4 cut(s) 21, 150, 641, 788
HinfI GANTC 6 cut(s) 95, 206, 557, 704, 902, 1343
HpaII CCGG 2 cut(s) 1330, 1490
HphI GGTGA 5 cut(s) 44, 524, 671, 1147, 1285
Hpy166II GTNNAC 5 cut(s) 524, 942, 1366, 1477, 1498
Hpy188I TCNGA 8 cut(s) 544, 678, 691, 979, 1096, 1104, 1195, 1361
Hpy188III TCNNGA 4 cut(s) 158, 491, 1301, 1550
Hpy8I GTNNAC 5 cut(s) 524, 942, 1366, 1477, 1498
Hpy99I CGWCG 2 cut(s) 1469, 1478
HpyAV CCTTC 1 cut(s) 1109
HpyCH4III ACNGT 4 cut(s) 1222, 1285, 1569, 1575
HpyCH4IV ACGT 2 cut(s) 181, 665
HpyCH4V TGCA 8 cut(s) 84, 263, 325, 374, 443, 452, 569, 716
HpyF3I CTNAG 6 cut(s) 117, 822, 887, 1116, 1229, 1358
HpySE526I ACGT 2 cut(s) 181, 665
Hsp92I GRCGYC 1 cut(s) 1333
Hsp92II CATG 4 cut(s) 125, 161, 725, 1441
HspAI GCGC 2 cut(s) 11, 1252
KspI CCGCGG 1 cut(s) 1545
Kzo9I GATC 2 cut(s) 1268, 1297
LmnI GCTCC 7 cut(s) 424, 595, 742, 794, 883, 1249, 1353
Lsp1109I GCAGC 7 cut(s) 436, 455, 458, 472, 553, 700, 809
LweI GCATC 1 cut(s) 430
MaeII ACGT 2 cut(s) 181, 665
MaeIII GTNAC 3 cut(s) 96, 961, 1569
MalI GATC 2 cut(s) 1270, 1299
MboI GATC 2 cut(s) 1268, 1297
MflI RGATCY 1 cut(s) 1297
MhlI GDGCHC 2 cut(s) 1527, 1557
MlyI GAGTC 4 cut(s) 104, 215, 566, 713
MmeI TCCRAC 2 cut(s) 573, 720
Mph1103I ATGCAT 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 938
MseI TTAA 7 cut(s) 26, 78, 291, 506, 1026, 1262, 1290
MslI CAYNNNNRTG 2 cut(s) 626, 773
MspA1I CMGCKG 2 cut(s) 449, 1544
MspI CCGG 2 cut(s) 1330, 1490
MspR9I CCNGG 2 cut(s) 1330, 1490
MvnI CGCG 1 cut(s) 1544
NciI CCSGG 2 cut(s) 1330, 1490
NdeI CATATG 2 cut(s) 623, 770
NdeII GATC 2 cut(s) 1268, 1297
NlaIII CATG 4 cut(s) 125, 161, 725, 1441
NlaIV GGNNCC 1 cut(s) 1517
NmuCI GTSAC 3 cut(s) 96, 961, 1569
NsbI TGCGCA 1 cut(s) 12
NsiI ATGCAT 1 cut(s) 86
NspV TTCGAA 1 cut(s) 867
PaeR7I CTCGAG 1 cut(s) 1550
PagI TCATGA 1 cut(s) 157
PaqCI CACCTGC 1 cut(s) 1362
PcsI WCGNNNNNNNCGW 4 cut(s) 1330, 1473, 1479, 1533
PdmI GAANNNNTTC 1 cut(s) 938
PfeI GAWTC 2 cut(s) 902, 1343
PkrI GCNGC 8 cut(s) 445, 448, 451, 487, 568, 715, 799, 1543
PleI GAGTC 4 cut(s) 103, 214, 565, 712
PpsI GAGTC 4 cut(s) 103, 214, 565, 712
PspN4I GGNNCC 1 cut(s) 1517
PspPI GGNCC 2 cut(s) 1461, 1515
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 1297
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 4 cut(s) 115, 402, 1044, 1067
RsaNI GTAC 4 cut(s) 114, 401, 1043, 1066
RseI CAYNNNNRTG 2 cut(s) 626, 773
SacII CCGCGG 1 cut(s) 1545
SalI GTCGAC 1 cut(s) 1475
SaqAI TTAA 7 cut(s) 26, 78, 291, 506, 1026, 1262, 1290
SatI GCNGC 8 cut(s) 444, 447, 450, 486, 567, 714, 798, 1542
Sau3AI GATC 2 cut(s) 1268, 1297
Sau96I GGNCC 2 cut(s) 1461, 1515
ScaI AGTACT 1 cut(s) 115
SchI GAGTC 4 cut(s) 104, 215, 566, 713
ScrFI CCNGG 2 cut(s) 1330, 1490
SduI GDGCHC 2 cut(s) 1527, 1557
SfaNI GCATC 1 cut(s) 430
Sfr274I CTCGAG 1 cut(s) 1550
Sfr303I CCGCGG 1 cut(s) 1545
SfuI TTCGAA 1 cut(s) 867
SgrBI CCGCGG 1 cut(s) 1545
SinI GGWCC 1 cut(s) 1461
SlaI CTCGAG 1 cut(s) 1550
SmiMI CAYNNNNRTG 2 cut(s) 626, 773
SmlI CTYRAG 2 cut(s) 489, 1550
SmoI CTYRAG 2 cut(s) 489, 1550
SsiI CCGC 5 cut(s) 1214, 1447, 1493, 1542, 1544
StyD4I CCNGG 2 cut(s) 1328, 1488
TaaI ACNGT 4 cut(s) 1222, 1285, 1569, 1575
TaiI ACGT 2 cut(s) 184, 668
TatI WGTACW 4 cut(s) 113, 400, 1042, 1065
TauI GCSGC 1 cut(s) 1544
TfiI GAWTC 2 cut(s) 902, 1343
Tru1I TTAA 7 cut(s) 26, 78, 291, 506, 1026, 1262, 1290
Tru9I TTAA 7 cut(s) 26, 78, 291, 506, 1026, 1262, 1290
TscAI CASTG 3 cut(s) 807, 949, 1225
TseFI GTSAC 3 cut(s) 96, 961, 1569
TseI GCWGC 7 cut(s) 443, 446, 449, 485, 566, 713, 797
Tsp45I GTSAC 3 cut(s) 96, 961, 1569
TspDTI ATGAA 7 cut(s) 138, 174, 324, 492, 618, 765, 1227
TspGWI ACGGA 3 cut(s) 218, 911, 1453
TspRI CASTG 3 cut(s) 807, 949, 1225
VpaK11BI GGWCC 1 cut(s) 1461
XapI RAATTY 5 cut(s) 126, 140, 502, 896, 1304
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XhoI CTCGAG 1 cut(s) 1550
XmiI GTMKAC 1 cut(s) 1476
XmnI GAANNNNTTC 1 cut(s) 938
ZrmI AGTACT 1 cut(s) 115
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.