RchiOBHm_Chr5g0016261

WPP domain-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001383
Physical Location & Seq
Forward (+)
11239250 .. 11243608
4359 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29664

Sequence Viewer

Length: 2316 bp
ATGGTTCACTTGTCAAAGGCATCAGTACATGAATGGCAGCTGGAGCAGGAGTTTAGAGCAAAAATTGAAGAGCTTGTGATGATGAATTGTATTTGGAGCGTTGAAGGAAACATGTGGGATTGCTTTTATAGTGCAAAAAATGTGAACTTGCATGGAAGGAAGAAGGAGATATCAAGTATACGCGATGAATTAGATGCTATTTCTAAATCACTATCTGTTTGTGACAATGGACAGCTATCTTCAGAGGGATCCTTGGAAGTTGAAGAAGAGAGTGGTAACGGTAATAAGGGTGCCGGTTCACACCCCAAGGTTTTGAACAATCTTAAATCATCATCATCATTACCATCACCAATAACAACAGCAACAACATCATCACCATCAGCATCATCATCTTCATCTCTTTGCGAGGAAAATGGTATACATGATGAGTTAGAAACAAATATGGAAGAAGATTTAGATCCTGCCTTGCTTAAGCATATGAAGAAAGAAGAATTGATAAGCCATTGTAAGAGTAAGATTACTAAATTGAAGAGAAACCATGAGTTAGAAGTACAAGATCTGACTGAGCAGCATTTCGGCCACATGAGGGAAGTGCTGAGAGAAAGGAGATTCTCTTTAACATTGGAGAAGAATAAGGAGTTCGATATGTTGAGAAAGAGAATCTCTGAGGTGGTTTCTAAAGTAGATGAAATTCTTGTAGAAAAGGAGGAAGTAGCTACATTGCTTCCTCATACATTTGGCAGCAATGAAGAAAGTCTCAGCAGTTTGAAAGATGGAGTGGAATCACTCCTCTCAGAAAACCACCAACTCAGAGATTTGCTTGAAGATAAGAATGGACAAATTAAGTGCCTTTCACTACAAGATTCTGAAGCTGCAAAGAACCGGTCACAACACTCTCTGGCTGAGGCAAAGTTATTGAAAACAGTTGGAAATGTTAAAGCAGCTATGGAAGATGCGCATATTGAAGCTTTAATTGGTGAAGATTTATTTTCTTGTATTGTCAGGGAAGTGGTGGATGAGATTAAATGCATTGCTGAAGAGTCACAGGTGGAGAACAGTACTAAGCATGAAATTTACAAAAGCAAATTCAAAGAAGCTTCTCATGAAGCTGAACTTGCTACCAAACGTGAATTGGAAGATTTGGATATGGAGTCCATCATCACGCAAGAAGTATGTGGTGTTATATTCAAAGATGCTTTGAAGAATGCAGAAGAGAAACTCAATGAGCTGAACATTAAATATATTGAGGAATATGATCATCGGGTTTTGCAGGAGATGGACAAACGAGAAAAGGAAAAACAATTAGAAGTGGAGGTTGCAAACAAAGTGAGATTACAGCAAGAAGTACATTTTCTGGTAGAAGAAAAGGAGCAGTTGGCACGAGATGCAGCAGCTGCATTGGAAATCGAAAAAGAAATATATGAATTAGCTGCTCAAGAGGTTGAAAATTTAAGGGGTGAGACGTTTCAACATCAGAAATTGATTTCAGAAAGCGTTGAAGAGTCAAATGCTGCAAAGAGTGATTTGGTTGAGGCGTTGGAGCAAAATGAAAGACACAGGGCAGACATTTGTGTGTTAGAACAAAAGCTTGAAGCAGTAAGGGGTGAGACGTTTCCACATCAGAAATTGATTTCAGAAAGCGTTGAAGAGTCAAATGCTGCAAAGCGTGATTTGGTTGAGGCGTTGGAGCAAAATGAAAGACACAGGGCAGACATATGTGTGTTAGAACAAAAGCTTGGAGCAGCAGTGAAAGAGTTGAGGCAAGCTGAGGAAGATTTCTATCAACAGAAGCAGATTGCTGTATCATTGTTCGAAGCAAAAGAAAGGGAGCTTAGCGAGAAATTTGAATCAATAGCTGTCTATATCCGTGAATTATTGAAAGCGTTCACTGATTTTGAATGTAGAGTGACACGAGATATTTCAGAGAAATGTTCGAGGTTGAAAAGTTTGACTTCTCAATCACATTTGCTTAAACAAAAAGCTGACGTACTTGTAAGACGAGGATTGCTGTACAAGCAAAGACTGGAAAAGAAATGTTCTGACCTTGAGAAAGCTGAAACTGAGATGGGTGTGCCCGGCCCATATTCTACTTCATTTGGGTTAGGCACTTCTCCATTTCCTTCCAATACTGCAACCCATGATGATTACGTCCCCTTCACTCCACAGCCGACTCTCTCTTCGCCTCACACCCCAACCTACTCCTCCATCACCTCCCCTACCCCAAACCCCATTTTACCACCATCATCTGATGACCCTTGCCTCTCCCACCCACTGTGGTTCTCAGTATTTCATCTTACTCGGAGCGCCTGCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
No domains found.

Protein Analysis

771

Amino Acids

87.37

Weight (kDa)

5.11

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 957
AccB1I GGYRCC 1 cut(s) 290
AccI GTMKAC 2 cut(s) 178, 418
AccII CGCG 1 cut(s) 183
AclWI GGATC 3 cut(s) 243, 256, 452
AcoI YGGCCR 1 cut(s) 577
AcsI RAATTY 5 cut(s) 690, 1071, 1085, 1447, 1841
AcuI CTGAAG 3 cut(s) 225, 888, 1056
AfaI GTAC 6 cut(s) 27, 552, 1060, 1347, 1989, 2012
AfiI CCNNNNNNNGG 1 cut(s) 586
AflII CTTAAG 1 cut(s) 470
AflIII ACRYGT 1 cut(s) 111
AgeI ACCGGT 1 cut(s) 882
AjuI GAANNNNNNNTTGG 4 cut(s) 957, 989, 1719, 1751
Alw26I GTCTC 3 cut(s) 761, 1454, 1601
AlwI GGATC 3 cut(s) 243, 256, 452
AlwNI CAGNNNCTG 1 cut(s) 1394
AoxI GGCC 2 cut(s) 577, 2077
ApoI RAATTY 5 cut(s) 690, 1071, 1085, 1447, 1841
ArsI GACNNNNNNTTYG 4 cut(s) 869, 901, 2161, 2193
AsiGI ACCGGT 1 cut(s) 882
Asp700I GAANNNNTTC 1 cut(s) 1883
AspLEI GCGC 2 cut(s) 958, 2306
AspS9I GGNCC 1 cut(s) 2078
AsuC2I CCSGG 1 cut(s) 2076
AsuHPI GGTGA 6 cut(s) 339, 366, 989, 1469, 1616, 2200
AsuII TTCGAA 1 cut(s) 1812
BaeGI GKGCMC 1 cut(s) 2076
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 290
BauI CACGAG 2 cut(s) 1380, 1911
BbvCI CCTCAGC 2 cut(s) 903, 1767
BccI CCATC 8 cut(s) 352, 385, 767, 1163, 1270, 2059, 2213, 2248
BclI TGATCA 1 cut(s) 1255
BcnI CCSGG 1 cut(s) 2076
BcoDI GTCTC 3 cut(s) 761, 1454, 1601
BfoI RGCGCY 1 cut(s) 2307
BfrI CTTAAG 1 cut(s) 470
BglII AGATCT 1 cut(s) 556
BlpI GCTNAGC 1 cut(s) 1832
BmcAI AGTACT 1 cut(s) 1060
Bme1390I CCNGG 1 cut(s) 2076
BmgT120I GGNCC 1 cut(s) 2078
BmiI GGNNCC 2 cut(s) 250, 292
BmrFI CCNGG 1 cut(s) 2076
BmsI GCATC 6 cut(s) 29, 184, 392, 943, 1183, 1375
BpmI CTGGAG 1 cut(s) 62
Bpu10I CCTNAGC 2 cut(s) 903, 1767
Bpu1102I GCTNAGC 1 cut(s) 1832
Bpu14I TTCGAA 1 cut(s) 1812
BpuEI CTTGAG 2 cut(s) 1419, 2066
BpuMI CCSGG 1 cut(s) 2076
BsaBI GATNNNNATC 2 cut(s) 456, 1779
BsaJI CCNNGG 2 cut(s) 252, 306
BsaWI WCCGGW 1 cut(s) 882
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 1731, 1761
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse118I RCCGGY 2 cut(s) 293, 882
Bse1I ACTGG 1 cut(s) 2028
Bse3DI GCAATG 3 cut(s) 719, 751, 1029
Bse8I GATNNNNATC 2 cut(s) 456, 1779
BseDI CCNNGG 2 cut(s) 252, 306
BseGI GGATG 1 cut(s) 1021
BseJI GATNNNNATC 2 cut(s) 456, 1779
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMI GCAATG 3 cut(s) 719, 751, 1029
BseNI ACTGG 1 cut(s) 2028
BseRI GAGGAG 2 cut(s) 779, 2191
BseSI GKGCMC 1 cut(s) 2076
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 2 cut(s) 579, 2079
BshNI GGYRCC 1 cut(s) 290
BshTI ACCGGT 1 cut(s) 882
BsiSI CCGG 3 cut(s) 294, 883, 2076
BslFI GGGAC 1 cut(s) 2135
BslI CCNNNNNNNGG 1 cut(s) 586
BsmAI GTCTC 3 cut(s) 761, 1454, 1601
BsmBI CGTCTC 2 cut(s) 1454, 1601
BsmFI GGGAC 1 cut(s) 2135
BsmI GAATGC 1 cut(s) 1210
BsnI GGCC 2 cut(s) 579, 2079
Bsp119I TTCGAA 1 cut(s) 1812
Bsp1286I GDGCHC 1 cut(s) 2076
Bsp1407I TGTACA 1 cut(s) 2010
Bsp143I GATC 4 cut(s) 248, 457, 556, 1255
Bsp1720I GCTNAGC 1 cut(s) 1832
BspANI GGCC 2 cut(s) 579, 2079
BspFNI CGCG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 1102
BspLI GGNNCC 2 cut(s) 250, 292
BspPI GGATC 3 cut(s) 243, 256, 452
BspQI GCTCTTC 1 cut(s) 63
BspT104I TTCGAA 1 cut(s) 1812
BspT107I GGYRCC 1 cut(s) 290
BspTI CTTAAG 1 cut(s) 470
BsrDI GCAATG 3 cut(s) 719, 751, 1029
BsrFI RCCGGY 2 cut(s) 293, 882
BsrGI TGTACA 1 cut(s) 2010
BsrI ACTGG 1 cut(s) 2028
BssAI RCCGGY 2 cut(s) 293, 882
BssECI CCNNGG 2 cut(s) 252, 306
BssMI GATC 4 cut(s) 248, 457, 556, 1255
BssNAI GTATAC 2 cut(s) 179, 419
BssSI CACGAG 2 cut(s) 1380, 1911
BssT1I CCWWGG 2 cut(s) 252, 306
Bst1107I GTATAC 2 cut(s) 179, 419
Bst2BI CACGAG 2 cut(s) 1380, 1911
Bst4CI ACNGT 4 cut(s) 281, 925, 1058, 2274
Bst6I CTCTTC 8 cut(s) 63, 261, 524, 1032, 1206, 1494, 1641, 2182
BstAFI CTTAAG 1 cut(s) 470
BstAPI GCANNNNNTGC 2 cut(s) 1385, 1394
BstAUI TGTACA 1 cut(s) 2010
BstBI TTCGAA 1 cut(s) 1812
BstC8I GCNNGC 2 cut(s) 1764, 2308
BstF5I GGATG 1 cut(s) 1021
BstFNI CGCG 1 cut(s) 183
BstH2I RGCGCY 1 cut(s) 2307
BstHHI GCGC 2 cut(s) 958, 2306
BstKTI GATC 4 cut(s) 251, 460, 559, 1258
BstMAI GTCTC 3 cut(s) 761, 1454, 1601
BstMBI GATC 4 cut(s) 248, 457, 556, 1255
BstMWI GCNNNNNNNGC 5 cut(s) 43, 1115, 1385, 1394, 2014
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 2074
BstSLI GKGCMC 1 cut(s) 2076
BstUI CGCG 1 cut(s) 183
BstX2I RGATCY 3 cut(s) 248, 457, 556
BstYI RGATCY 3 cut(s) 248, 457, 556
BstZ17I GTATAC 2 cut(s) 179, 419
BsuRI GGCC 2 cut(s) 579, 2079
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 1021
BtsI GCAGTG 1 cut(s) 1752
BtsIMutI CAGTG 3 cut(s) 1752, 1887, 2270
Cac8I GCNNGC 2 cut(s) 1764, 2308
CaiI CAGNNNCTG 1 cut(s) 1394
CciI TCATGA 1 cut(s) 1102
CfoI GCGC 2 cut(s) 958, 2306
Cfr10I RCCGGY 2 cut(s) 293, 882
Cfr13I GGNCC 1 cut(s) 2078
Csp6I GTAC 6 cut(s) 26, 551, 1059, 1346, 1988, 2011
CspAI ACCGGT 1 cut(s) 882
CviAII CATG 9 cut(s) 29, 112, 152, 422, 539, 583, 1067, 1103, 2138
CviQI GTAC 6 cut(s) 26, 551, 1059, 1346, 1988, 2011
DpnI GATC 4 cut(s) 250, 459, 558, 1257
DpnII GATC 4 cut(s) 248, 457, 556, 1255
EaeI YGGCCR 1 cut(s) 577
Eam1104I CTCTTC 8 cut(s) 63, 261, 524, 1032, 1206, 1494, 1641, 2182
EarI CTCTTC 8 cut(s) 63, 261, 524, 1032, 1206, 1494, 1641, 2182
Eco130I CCWWGG 2 cut(s) 252, 306
Eco32I GATATC 1 cut(s) 171
Eco57I CTGAAG 3 cut(s) 225, 888, 1056
EcoRV GATATC 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 252, 306
EcoT22I ATGCAT 1 cut(s) 1031
ErhI CCWWGG 2 cut(s) 252, 306
Esp3I CGTCTC 2 cut(s) 1454, 1601
FaeI CATG 9 cut(s) 32, 115, 155, 425, 542, 586, 1070, 1106, 2141
FalI AAGNNNNNCTT 4 cut(s) 1098, 1130, 1936, 1968
FaqI GGGAC 1 cut(s) 2135
FatI CATG 9 cut(s) 28, 111, 151, 421, 538, 582, 1066, 1102, 2137
FauNDI CATATG 2 cut(s) 477, 1715
FbaI TGATCA 1 cut(s) 1255
FblI GTMKAC 2 cut(s) 178, 418
FokI GGATG 1 cut(s) 1028
FspAI RTGCGCAY 1 cut(s) 957
FspI TGCGCA 1 cut(s) 957
GlaI GCGC 2 cut(s) 957, 2305
GsuI CTGGAG 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 2307
HaeIII GGCC 2 cut(s) 579, 2079
HapII CCGG 3 cut(s) 294, 883, 2076
HhaI GCGC 2 cut(s) 958, 2306
Hin1II CATG 9 cut(s) 32, 115, 155, 425, 542, 586, 1070, 1106, 2141
Hin6I GCGC 2 cut(s) 956, 2304
HinP1I GCGC 2 cut(s) 956, 2304
HindIII AAGCTT 4 cut(s) 966, 1095, 1586, 1733
HpaII CCGG 3 cut(s) 294, 883, 2076
HphI GGTGA 6 cut(s) 339, 366, 989, 1469, 1616, 2200
Hpy166II GTNNAC 6 cut(s) 7, 145, 179, 299, 419, 1887
Hpy188III TCNNGA 2 cut(s) 1103, 1436
Hpy8I GTNNAC 6 cut(s) 7, 145, 179, 299, 419, 1887
HpyAV CCTTC 5 cut(s) 98, 150, 157, 2130, 2164
HpyCH4III ACNGT 4 cut(s) 281, 925, 1058, 2274
HpyCH4IV ACGT 5 cut(s) 1126, 1463, 1610, 1986, 2148
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 1115, 1385, 1394, 2014
HpySE526I ACGT 5 cut(s) 1126, 1463, 1610, 1986, 2148
Hsp92II CATG 9 cut(s) 32, 115, 155, 425, 542, 586, 1070, 1106, 2141
HspAI GCGC 2 cut(s) 956, 2304
Ksp22I TGATCA 1 cut(s) 1255
Kzo9I GATC 4 cut(s) 248, 457, 556, 1255
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 8 cut(s) 43, 96, 1369, 1540, 1687, 1739, 1828, 2301
LweI GCATC 6 cut(s) 29, 184, 392, 943, 1183, 1375
MaeII ACGT 5 cut(s) 1126, 1463, 1610, 1986, 2148
MaeIII GTNAC 5 cut(s) 221, 275, 885, 1041, 1906
MalI GATC 4 cut(s) 250, 459, 558, 1257
MboI GATC 4 cut(s) 248, 457, 556, 1255
MflI RGATCY 3 cut(s) 248, 457, 556
MhlI GDGCHC 1 cut(s) 2076
MlyI GAGTC 5 cut(s) 1049, 1160, 1511, 1658, 2164
MmeI TCCRAC 3 cut(s) 907, 1518, 1665
Mph1103I ATGCAT 1 cut(s) 1031
MroXI GAANNNNTTC 1 cut(s) 1883
MslI CAYNNNNRTG 2 cut(s) 1571, 1718
MspA1I CMGCKG 2 cut(s) 40, 1394
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 3 cut(s) 294, 883, 2076
MspR9I CCNGG 1 cut(s) 2076
Mva1269I GAATGC 1 cut(s) 1210
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 5 cut(s) 43, 1115, 1385, 1394, 2014
NciI CCSGG 1 cut(s) 2076
NdeI CATATG 2 cut(s) 477, 1715
NdeII GATC 4 cut(s) 248, 457, 556, 1255
NlaIII CATG 9 cut(s) 32, 115, 155, 425, 542, 586, 1070, 1106, 2141
NlaIV GGNNCC 2 cut(s) 250, 292
NmuCI GTSAC 4 cut(s) 221, 885, 1041, 1906
NsbI TGCGCA 1 cut(s) 957
NsiI ATGCAT 1 cut(s) 1031
NspI RCATGY 1 cut(s) 115
NspV TTCGAA 1 cut(s) 1812
PagI TCATGA 1 cut(s) 1102
PciI ACATGT 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 63
PctI GAATGC 1 cut(s) 1210
PdmI GAANNNNTTC 1 cut(s) 1883
PfeI GAWTC 5 cut(s) 609, 660, 782, 863, 1847
PinAI ACCGGT 1 cut(s) 882
PleI GAGTC 5 cut(s) 1048, 1159, 1510, 1657, 2164
PpsI GAGTC 5 cut(s) 1048, 1159, 1510, 1657, 2164
PscI ACATGT 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 250, 292
PspPI GGNCC 1 cut(s) 2078
PstNI CAGNNNCTG 1 cut(s) 1394
PsuI RGATCY 3 cut(s) 248, 457, 556
PvuII CAGCTG 2 cut(s) 40, 1394
RsaI GTAC 6 cut(s) 27, 552, 1060, 1347, 1989, 2012
RsaNI GTAC 6 cut(s) 26, 551, 1059, 1346, 1988, 2011
RseI CAYNNNNRTG 2 cut(s) 1571, 1718
SapI GCTCTTC 1 cut(s) 63
Sau3AI GATC 4 cut(s) 248, 457, 556, 1255
Sau96I GGNCC 1 cut(s) 2078
ScaI AGTACT 1 cut(s) 1060
SchI GAGTC 5 cut(s) 1049, 1160, 1511, 1658, 2164
ScrFI CCNGG 1 cut(s) 2076
SduI GDGCHC 1 cut(s) 2076
SfaNI GCATC 6 cut(s) 29, 184, 392, 943, 1183, 1375
SfuI TTCGAA 1 cut(s) 1812
SmiMI CAYNNNNRTG 2 cut(s) 1571, 1718
SmlI CTYRAG 3 cut(s) 470, 1434, 2045
SmoI CTYRAG 3 cut(s) 470, 1434, 2045
StyD4I CCNGG 1 cut(s) 2074
StyI CCWWGG 2 cut(s) 252, 306
TaaI ACNGT 4 cut(s) 281, 925, 1058, 2274
TaiI ACGT 5 cut(s) 1129, 1466, 1613, 1989, 2151
TaqI TCGA 4 cut(s) 642, 1407, 1812, 1934
TatI WGTACW 5 cut(s) 25, 550, 1058, 1345, 2010
TfiI GAWTC 5 cut(s) 609, 660, 782, 863, 1847
TscAI CASTG 3 cut(s) 1752, 1894, 2277
TseFI GTSAC 4 cut(s) 221, 885, 1041, 1906
Tsp45I GTSAC 4 cut(s) 221, 885, 1041, 1906
TspGWI ACGGA 1 cut(s) 1856
TspRI CASTG 3 cut(s) 1752, 1894, 2277
Vha464I CTTAAG 1 cut(s) 470
XapI RAATTY 5 cut(s) 690, 1071, 1085, 1447, 1841
XceI RCATGY 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 1129
XmiI GTMKAC 2 cut(s) 178, 418
XmnI GAANNNNTTC 1 cut(s) 1883
ZrmI AGTACT 1 cut(s) 1060
Zsp2I ATGCAT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.