Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8206716.1

Orthogroup ID

OG0001383

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 574

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8206716.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 347 bp

atgtgtcaacatcagaaattgatttcagaaagcgttgaagagtcaaatgctgcaaagcgtgatttggctgaagcgttggagcaaaatgaaagacacaaggcagacatatgtaagttagaacaaaaacttgaagcagcagtgaaagagttgaggcaagttgaggaagatagaaggaggcttcttgatgtcaaccaagagaagcagaatgctgtatctctgttcaaagcaaaagaaagggagcttagtgaacaatttgaatcaatagctgtcaatgtcagtggattattgaaagcgtttactgatttcgaatgtagagtgacacgagatatttcaggaaaatgttcgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

13.21

Weight (kDa)

5.52

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34730 AT2G34730
fragaria_vesca	FvH4_3g10170 FvH4_3g10170 FvH4_3g10170 FvH4_3g10170 FvH4_3g10170 FvH4_3g10170
malus_domestica	MD05G1272600.v1.1 MD05G1272700.v1.1 MD10G1252800.v1.1
prunus_persica	Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.4G090700_v2.0.a1 Prupe.6G009000_v2.0.a1 Prupe.6G009100_v2.0.a1 Prupe.6G066700_v2.0.a1
pyrus_communis	pycom10g20850
rosa_chinensis	RchiOBHm_Chr5g0016081 RchiOBHm_Chr5g0016211 RchiOBHm_Chr5g0016261
rosa_laevigata	RLG00000032239 RLG00000032244
rosa_multiflora	Rmu_co7978980.1_g000001 Rmu_co8206716.1_g000001 Rmu_sc0000299.1_g000011 Rmu_sc0005506.1_g000012 Rmu_sc0007230.1_g000007 Rmu_sc0015959.1_g000001 Rmu_sc0015959.1_g000002 Rmu_sc0015959.1_g000016
rosa_roxburghii	Rroxscaffold_1G00060550 Rroxscaffold_1G00060580
rosa_rugosa	Rorug05G0031100 Rorug05G0031500 Rorug05G0031600 Rorug05G0031700
rosa_samantha	Rh5AG124500 Rh5AG124700 Rh5AG124800 Rh5BG123500 Rh5BG123700 Rh5CG135100 Rh5CG135600 Rh5CG136000 Rh5DG122800 Rh5DG123200 Rh5DG123500
rosa_wichuraiana	Rw5G010790 Rw5G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	90
AgsI	TTSAA	5 cut(s)	38, 131, 223, 257, 289
AluBI	AGCT	2 cut(s)	241, 266
AluI	AGCT	2 cut(s)	241, 266
ApeKI	GCWGC	2 cut(s)	50, 134
Asp700I	GAANNNNTTC	1 cut(s)	340
AsuII	TTCGAA	1 cut(s)	306
BauI	CACGAG	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	37, 146
BisI	GCNGC	2 cut(s)	51, 135
BlsI	GCNGC	2 cut(s)	52, 136
Bpu14I	TTCGAA	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	37, 146
BsmI	GAATGC	1 cut(s)	211
Bsp119I	TTCGAA	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	306
BssSI	CACGAG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	33
BstBI	TTCGAA	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	37, 146
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	144, 283
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviJI	RGCY	4 cut(s)	68, 178, 241, 266
CviKI_1	RGCY	4 cut(s)	68, 178, 241, 266
DdeI	CTNAG	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	90
FaiI	YATR	2 cut(s)	107, 109
FauNDI	CATATG	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	51, 135
Fsp4HI	GCNGC	2 cut(s)	51, 135
GluI	GCNGC	2 cut(s)	51, 135
HincII	GTYRAC	2 cut(s)	8, 190
HindII	GTYRAC	2 cut(s)	8, 190
HinfI	GANTC	2 cut(s)	41, 257
Hpy166II	GTNNAC	4 cut(s)	8, 190, 248, 297
Hpy188I	TCNGA	2 cut(s)	15, 28
Hpy188III	TCNNGA	2 cut(s)	182, 333
Hpy8I	GTNNAC	4 cut(s)	8, 190, 248, 297
HpyAV	CCTTC	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	242
LmnI	GCTCC	2 cut(s)	79, 238
LpnPI	CCDG	1 cut(s)	318
Lsp1109I	GCAGC	2 cut(s)	37, 146
MaeIII	GTNAC	1 cut(s)	316
MboII	GAAGA	2 cut(s)	50, 176
MluCI	AATT	2 cut(s)	17, 251
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	3 cut(s)	144, 154, 168
MroXI	GAANNNNTTC	1 cut(s)	340
Mva1269I	GAATGC	1 cut(s)	211
NdeI	CATATG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	306
PctI	GAATGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	52, 136
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
SatI	GCNGC	2 cut(s)	51, 135
SchI	GAGTC	1 cut(s)	50
SetI	ASST	2 cut(s)	243, 268
SfuI	TTCGAA	1 cut(s)	306
SgeI	CNNG	8 cut(s)	71, 109, 140, 167, 194, 206, 333, 335
Sse9I	AATT	2 cut(s)	17, 251
TaqI	TCGA	2 cut(s)	306, 344
TasI	AATT	2 cut(s)	17, 251
TfiI	GAWTC	1 cut(s)	257
TscAI	CASTG	2 cut(s)	144, 283
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	50, 134
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	102
TspRI	CASTG	2 cut(s)	144, 283
XmnI	GAANNNNTTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.