Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003373

Physical Location & Seq

Genomic Coordinates Reverse (-)

45286027 .. 45292287

Gene Structure 6261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1326700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3075 bp

ATGGGCGAGGAGGGTGCGCTGCCGGACCATCTGCGGTGCAGCCGGACCGACGGCCGGCAGTGGCGGTGCAAGCGGAGGGTCATGGACGACATGAAGCTCTGCGAGATTCACTATCTGCAAGGCCGTCACCGTCAGTTCAGAGAGAAAGTCCCCGAGTCACTCAAGCTCCAGAGGACGCCCAAAAACGCGGGGAAGAAAGATCAAAACGGCAGCGGAGTCAAAATTAGGGCACGGAAAGTGGAGAATTTGGTGAAGCTGCTGAAGCGGAAGCGATCCGACGAGGCGGTGAAGAATTGCAAGAAGAAGAAGAGGAAGGTGAAGTTGAAGAAGAGCGAGTTGAATTTGGAGCTCATACGGATGGTGCTGAGGCGGGAGGTCGAGAAGCGGAACCAGACGACGACGAAGAACAAGGTTGTGGAGGAGAGTGAGGCGGATGACGACGACGACGACGACGATCGCGGCGGTGGTGGTCTCACCAGAGACTTGCCTAATGGCCGAATGGCAATCTCGTCGTCTTCGTCGCAGTCGCCGAGGCTTCGTTCCGGCAATGCAGGTTCCAATTCGTCTTCTGATGGGAAGGTCGGGGCTGATTTGAACCCGGTTACTACTCGGCGGCGGTGCTTTCGGTCCAAAAACATCGAGCCAATGCCTGCTGGCACATTTCAGTTTCTGCCATATAATGTGGGGAAGTTGAGGAAGGGGAAGAGGAAAAAGTGCCATTGGTGTCGAAAAAGCGGGAGCGGTGTTTCTTCCTGTCTAATTAAGTGTTCCAGTTGCCAGAAGCACTTCTTTTGCTTGAATTGCATCAAAGAAAGGTACTTTGATACACAAGATGAAGTCAAAATGGCATGCCCAGTTTGTCGAGGAACTTGCCCTTGTAAGGAATGCTCTGAAAATCAAACAAAAGACGCTGAAAGTAAGGATTATTTGGGGGTTAAGAATAAAGTTGAAGTAATACTACAGTTCCATTACCTGATCTGTATGCTTCTTCCTGTGTTAAAACAAATAAACCAAGATCAGAAAGTTGAGCTAGAAGCAGAGGCCAAAATGAGAGGGGAAAAGCTATCTGAAGTTCATATCAAGCAGGCTGAATATAGCTGCAGTGAACAACACTACTGCAATAAATGCAAAGCTTCAATAGTGGATCTCCATAGAAGCTGCCCAAATTGTTCCTATAACCTCTGTCTAAGTTGTTGTCGAGATCTGTTAAGTGAGAGCCTTTTTGGTGGTATAAACACATCTCTCCTAAAGCACTCCAACAAAAAGAAAACTTGCGTCTCTGGTAAGAAGCAACTTGTAAAGAAGCCAATAACTGCCCATGAGCAAAGTGTCCATAGTTTGTACCATTCTTCTTCTGCACCAGTGCCTAGCTTGAAAGCTTGTGATGCTGTTAATGGTATATCTTGCCCAGCTAAGGAGTTTGGAGGTTGTGGTGACAGCCTCCTTGATTTGAGATGTGTTTTTCCGTTAAGTTGGATCAAAGATCTAGAAGTAAGTGCAGAAGAAATAGTTTGCAGCTATGAATTTCCAGAAACTGCTGACATGTCTTTGTGCTGCCCACTATGTTTGGGTGTGGACCAGAAAGTTGATGGGCATCAACAGTTGCAAGAAGCTTCTGTGAGAGAGAACTCAAATGATAACTACTTATTCTACCCCACTCCTGTGAACACAAATGGTGATAATGTTGAGCACTTTCAGAAACACTGGAGTAAAGGTCACCCTGTAATAGTGCGTGACGTACTTCAAGCTACATCAGATTTGAGTTGGGATCCAGTGTCCATGTTCTGCACTTATCTTGAGAGGAGCATTGCTAGATATGAAAACAACACAAATTCACATGAAGCTATCCACTGCTTGGATTGGTGCGAGGTGGAACTTGGAATCAGGCAGTATTTCATGGGTTCATTGAGGGGGCAGGCCCAGAGAAATGTATGGAATGAGACACTGAAGTTGAAGGGTTGGCTTTCTTCGCATTTGTTTCAGGAACAGTTTCCCGCTCATTATGCTGAAATAATACGAGCTCTACCACTTCAAGAATACATGAATCCCATGTCTGGTCTTTTAAATCTTGCTGCAAGGATCCCACAAGAAATCCCAAAACCCGATCTAGGTCCATGTGTTTATATATCATATGGCTGCACCGAGCAACTTGTACAAGCTAATGCAGTGATAAAGCTATGTTATGACTCATGCGATGTGGTTAACATTTTGGCACATGCATCAGATGTCCCTATCTCTGATGAACAAGTTTCTAAAATAAGAAAGTTACTGAAAAAGCACAAGGCTCAAAATCAGAGGGAGGTTTCTAGGGTTGCTTCTGAACAATCTGTGGCAAAAAAAGTCAATGGAGAACCAGTATTGTATGGTGAAACCATGAAAGAAGCAGGGCTACATAATGTGATTGGAGAGGAGATGCATTTACGCAAAAGAATTGCTAGAGAGTCTTGCTTCTCCATGCATGAAGCATGCGCAGATGCTGAAGCATCTGATTCTGATTCTGAAGCCACATTAAGTAGCTCTGGGACGCTTCATGATGCTGAAACATCTAAAGATACAAAGTGTGAGGTTCTGCTCGACAGCTGCAATAGCTATGAAAAGCAATCCTTGGACGAGTGTTGTGGTGCCCAATGGGATGTTTTTCGCAGACAAGATGTTCCGAAACTTATAGAATATCTCAGAAGGCACTCTAATGAATTCACTCGTAAATTTGACTTTCATAAACATGTTGTTCACCCCATTCTTGATCAGAGTTTCTTTCTAGACTCAAGTCACAAATTAAGGCTGAAGGAGGAATTTAAAATTGAGCCTTGGACTTTCGAGCAACACATTGGAGAAGCTGTTATCATCCCTGCTGGATGCCCATATCAGATTAGGAATTCTAAGTCTTGTGTACATGTGGTGCTGGACTTTGTATCACCCGAAAACGTTGCCGAGTGCATCCAGTTGACTGATGAAGTCCGTCTACTTCCAGCAGACCATAAAGCAAAAGTTGACAAGCTAGAGGTGAAGAGAATGGCCCTTTATAGTATTAGTTCAGCAATCAAAGAAATACGTGAGCTTACTTGTCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC WRC

Protein Analysis

1025

Amino Acids

116.05

Weight (kDa)

8.43

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRC	PF08879	8 - 49	8.5e-17	WRC
JmjC	PF02373	861 - 970	2.2e-11	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21430
fragaria_vesca	FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760
malus_domestica	MD05G1326700.v1.1 MD10G1304800.v1.1
prunus_persica	Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1
pyrus_communis	pycom05g30110 pycom10g25720
rosa_chinensis	RchiOBHm_Chr5g0005871
rosa_laevigata	RLG00000016376 RLG00000031332 RLG00000031334 RLG00000031337 RLG00000031345 RLG00000031346 RLG00000031385
rosa_multiflora	Rmu_sc0002694.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070030
rosa_rugosa	Rorug04G0418700 Rorug04G0418800 Rorug04G0418900
rosa_samantha	Rh5AG046200 Rh5BG044900 Rh5CG053800 Rh5DG044700
rosa_wichuraiana	Rw5G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2470
Acc36I	ACCTGC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	2621
AccB7I	CCANNNNNTGG	1 cut(s)	1855
AccBSI	CCGCTC	2 cut(s)	741, 1997
AccI	GTMKAC	1 cut(s)	2962
AccII	CGCG	2 cut(s)	188, 459
AclI	AACGTT	1 cut(s)	2925
AclWI	GGATC	7 cut(s)	267, 1152, 1484, 1763, 1776, 2074, 2087
AcoI	YGGCCR	2 cut(s)	52, 493
AcsI	RAATTY	8 cut(s)	244, 340, 1523, 1831, 2693, 2705, 2792, 2875
AcuI	CTGAAG	6 cut(s)	281, 1089, 1967, 2499, 2520, 2804
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	5 cut(s)	818, 1343, 1740, 2154, 2892
AfiI	CCNNNNNNNGG	6 cut(s)	54, 880, 1414, 1855, 2054, 2108
AflIII	ACRYGT	3 cut(s)	1542, 2722, 2893
AleI	CACNNNNGTG	1 cut(s)	1661
Alw21I	GWGCWC	3 cut(s)	351, 1692, 2023
Alw26I	GTCTC	4 cut(s)	474, 476, 1282, 1934
AlwI	GGATC	7 cut(s)	267, 1152, 1484, 1763, 1776, 2074, 2087
AlwNI	CAGNNNCTG	3 cut(s)	670, 1535, 2477
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	6 cut(s)	52, 121, 493, 1041, 1917, 3015
ApoI	RAATTY	8 cut(s)	244, 340, 1523, 1831, 2693, 2705, 2792, 2875
Asp700I	GAANNNNTTC	2 cut(s)	785, 1989
AspLEI	GCGC	2 cut(s)	19, 2471
AspS9I	GGNCC	7 cut(s)	25, 45, 627, 1576, 1918, 2111, 3016
AsuC2I	CCSGG	1 cut(s)	599
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	5 cut(s)	25, 45, 627, 1576, 2111
BaeGI	GKGCMC	2 cut(s)	232, 2626
BamHI	GGATCC	2 cut(s)	1768, 2079
BanI	GGYRCC	1 cut(s)	2621
BanII	GRGCYC	2 cut(s)	351, 2023
BarI	GAAGNNNNNNTAC	6 cut(s)	942, 974, 2373, 2405, 2946, 2978
BbsI	GAAGAC	2 cut(s)	507, 558
Bbv12I	GWGCWC	3 cut(s)	351, 1692, 2023
BbvCI	CCTCAGC	1 cut(s)	365
BccI	CCATC	4 cut(s)	36, 352, 566, 1583
BceAI	ACGGC	3 cut(s)	67, 108, 223
BcgI	CGANNNNNNTGC	7 cut(s)	30, 492, 526, 852, 886, 2909, 2943
BclI	TGATCA	1 cut(s)	2743
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	4 cut(s)	474, 476, 1282, 1934
BfaI	CTAG	9 cut(s)	1031, 1368, 1487, 1812, 2108, 2307, 2436, 2759, 2999
BfmI	CTRYAG	2 cut(s)	959, 1099
BfuAI	ACCTGC	1 cut(s)	542
BglII	AGATCT	2 cut(s)	1201, 1483
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	5 cut(s)	25, 45, 627, 1576, 2111
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	7 cut(s)	25, 45, 627, 1576, 1918, 2111, 3016
BmiI	GGNNCC	5 cut(s)	389, 556, 1770, 2081, 2623
BmrFI	CCNGG	1 cut(s)	599
BmrI	ACTGGG	1 cut(s)	848
BmuI	ACTGGG	1 cut(s)	848
BoxI	GACNNNNGTC	1 cut(s)	2766
BpiI	GAAGAC	2 cut(s)	507, 558
BpmI	CTGGAG	2 cut(s)	152, 1726
Bpu10I	CCTNAGC	2 cut(s)	365, 1413
BpuEI	CTTGAG	3 cut(s)	146, 1817, 2749
BpuMI	CCSGG	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	3053
BsaBI	GATNNNNATC	1 cut(s)	1593
BsaHI	GRCGYC	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	530, 2604, 2807
BsaXI	ACNNNNNCTCC	8 cut(s)	150, 180, 1699, 1729, 2340, 2370, 2823, 2853
Bsc4I	CCNNNNNNNGG	6 cut(s)	54, 880, 1414, 1855, 2054, 2108
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	7 cut(s)	771, 854, 1361, 1709, 1772, 2354, 2941
Bse3DI	GCAATG	2 cut(s)	553, 1806
Bse8I	GATNNNNATC	1 cut(s)	1593
BseDI	CCNNGG	3 cut(s)	530, 2604, 2807
BseGI	GGATG	6 cut(s)	363, 439, 2638, 2844, 2861, 2937
BseJI	GATNNNNATC	1 cut(s)	1593
BseLI	CCNNNNNNNGG	6 cut(s)	54, 880, 1414, 1855, 2054, 2108
BseMI	GCAATG	2 cut(s)	553, 1806
BseMII	CTCAG	2 cut(s)	356, 2689
BseNI	ACTGG	7 cut(s)	771, 854, 1361, 1709, 1772, 2354, 2941
BseRI	GAGGAG	4 cut(s)	23, 434, 1816, 2423
BseSI	GKGCMC	2 cut(s)	232, 2626
BseX3I	CGGCCG	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	1408
BsgI	GTGCAG	5 cut(s)	58, 1341, 1518, 1771, 2122
Bsh1236I	CGCG	2 cut(s)	188, 459
Bsh1285I	CGRYCG	2 cut(s)	55, 457
BshFI	GGCC	6 cut(s)	54, 123, 495, 1043, 1919, 3017
BshNI	GGYRCC	1 cut(s)	2621
BsiEI	CGRYCG	2 cut(s)	55, 457
BsiHKAI	GWGCWC	3 cut(s)	351, 1692, 2023
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	5 cut(s)	23, 43, 55, 543, 599
BslFI	GGGAC	3 cut(s)	134, 2213, 2536
BslI	CCNNNNNNNGG	6 cut(s)	54, 880, 1414, 1855, 2054, 2108
BsmAI	GTCTC	4 cut(s)	474, 476, 1282, 1934
BsmBI	CGTCTC	1 cut(s)	1282
BsmFI	GGGAC	3 cut(s)	134, 2213, 2536
BsmI	GAATGC	1 cut(s)	890
BsnI	GGCC	6 cut(s)	54, 123, 495, 1043, 1919, 3017
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	5 cut(s)	232, 351, 1692, 2023, 2626
Bsp1407I	TGTACA	2 cut(s)	2152, 2890
BspANI	GGCC	6 cut(s)	54, 123, 495, 1043, 1919, 3017
BspCNI	CTCAG	2 cut(s)	357, 2688
BspFNI	CGCG	2 cut(s)	188, 459
BspHI	TCATGA	1 cut(s)	2530
BspLI	GGNNCC	5 cut(s)	389, 556, 1770, 2081, 2623
BspMAI	CTGCAG	1 cut(s)	1103
BspMI	ACCTGC	1 cut(s)	542
BspPI	GGATC	7 cut(s)	267, 1152, 1484, 1763, 1776, 2074, 2087
BspQI	GCTCTTC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	2621
BspTNI	GGTCTC	1 cut(s)	476
BsrBI	CCGCTC	2 cut(s)	741, 1997
BsrDI	GCAATG	2 cut(s)	553, 1806
BsrFI	RCCGGY	1 cut(s)	54
BsrGI	TGTACA	2 cut(s)	2152, 2890
BsrI	ACTGG	7 cut(s)	771, 854, 1361, 1709, 1772, 2354, 2941
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	3 cut(s)	530, 2604, 2807
BssNI	GRCGYC	1 cut(s)	176
BssT1I	CCWWGG	2 cut(s)	2604, 2807
Bst4CI	ACNGT	4 cut(s)	131, 963, 1602, 1989
Bst6I	CTCTTC	4 cut(s)	302, 323, 698, 3002
BstACI	GRCGYC	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	1125
BstAUI	TGTACA	2 cut(s)	2152, 2890
BstBAI	YACGTR	1 cut(s)	3053
BstC8I	GCNNGC	8 cut(s)	56, 71, 651, 655, 850, 1086, 1917, 2467
BstDEI	CTNAG	5 cut(s)	365, 1187, 1413, 2675, 2880
BstEII	GGTNACC	1 cut(s)	1715
BstF5I	GGATG	6 cut(s)	363, 439, 2638, 2844, 2861, 2937
BstFNI	CGCG	2 cut(s)	188, 459
BstHHI	GCGC	2 cut(s)	19, 2471
BstMAI	GTCTC	4 cut(s)	474, 476, 1282, 1934
BstMCI	CGRYCG	2 cut(s)	55, 457
BstMWI	GCNNNNNNNGC	8 cut(s)	70, 262, 801, 1125, 1385, 1969, 2003, 2586
BstNSI	RCATGY	6 cut(s)	852, 1546, 2219, 2469, 2726, 2897
BstPAI	GACNNNNGTC	1 cut(s)	2766
BstPI	GGTNACC	1 cut(s)	1715
BstSCI	CCNGG	1 cut(s)	597
BstSFI	CTRYAG	2 cut(s)	959, 1099
BstSLI	GKGCMC	2 cut(s)	232, 2626
BstUI	CGCG	2 cut(s)	188, 459
BstV2I	GAAGAC	2 cut(s)	507, 558
BstX2I	RGATCY	5 cut(s)	1144, 1201, 1483, 1768, 2079
BstYI	RGATCY	5 cut(s)	1144, 1201, 1483, 1768, 2079
BstZI	CGGCCG	1 cut(s)	52
BsuRI	GGCC	6 cut(s)	54, 123, 495, 1043, 1919, 3017
BtgZI	GCGATG	1 cut(s)	2208
BtsCI	GGATG	6 cut(s)	363, 439, 2638, 2844, 2861, 2937
BtsI	GCAGTG	4 cut(s)	65, 1108, 1849, 2172
BtsIMutI	CAGTG	8 cut(s)	65, 1108, 1368, 1702, 1779, 1849, 1943, 2172
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	8 cut(s)	56, 71, 651, 655, 850, 1086, 1917, 2467
CaiI	CAGNNNCTG	3 cut(s)	670, 1535, 2477
CciI	TCATGA	1 cut(s)	2530
CfoI	GCGC	2 cut(s)	19, 2471
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	7 cut(s)	25, 45, 627, 1576, 1918, 2111, 3016
CpoI	CGGWCCG	1 cut(s)	45
CseI	GACGC	4 cut(s)	184, 917, 1264, 2533
Csp6I	GTAC	5 cut(s)	817, 1342, 1739, 2153, 2891
CspCI	CAANNNNNGTGG	2 cut(s)	1548, 1583
CspI	CGGWCCG	1 cut(s)	45
CviQI	GTAC	5 cut(s)	817, 1342, 1739, 2153, 2891
DdeI	CTNAG	5 cut(s)	365, 1187, 1413, 2675, 2880
DraI	TTTAAA	2 cut(s)	2064, 2797
EaeI	YGGCCR	2 cut(s)	52, 493
EagI	CGGCCG	1 cut(s)	52
Eam1104I	CTCTTC	4 cut(s)	302, 323, 698, 3002
EarI	CTCTTC	4 cut(s)	302, 323, 698, 3002
EciI	GGCGGA	1 cut(s)	446
Ecl136II	GAGCTC	2 cut(s)	349, 2021
EclXI	CGGCCG	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	2604, 2807
Eco24I	GRGCYC	2 cut(s)	351, 2023
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	5 cut(s)	25, 45, 627, 1576, 2111
Eco52I	CGGCCG	1 cut(s)	52
Eco53kI	GAGCTC	2 cut(s)	349, 2021
Eco57I	CTGAAG	6 cut(s)	281, 1089, 1967, 2499, 2520, 2804
Eco88I	CYCGRG	1 cut(s)	152
Eco91I	GGTNACC	1 cut(s)	1715
EcoICRI	GAGCTC	2 cut(s)	349, 2021
EcoO65I	GGTNACC	1 cut(s)	1715
EcoRI	GAATTC	2 cut(s)	2693, 2875
EcoT14I	CCWWGG	2 cut(s)	2604, 2807
EcoT22I	ATGCAT	3 cut(s)	2221, 2418, 2460
EcoT38I	GRGCYC	2 cut(s)	351, 2023
ErhI	CCWWGG	2 cut(s)	2604, 2807
Esp3I	CGTCTC	1 cut(s)	1282
FalI	AAGNNNNNCTT	4 cut(s)	773, 805, 2588, 2620
FaqI	GGGAC	3 cut(s)	134, 2213, 2536
FauI	CCCGC	4 cut(s)	181, 363, 728, 2002
FauNDI	CATATG	1 cut(s)	2131
FbaI	TGATCA	1 cut(s)	2743
FblI	GTMKAC	1 cut(s)	2962
FokI	GGATG	6 cut(s)	370, 446, 2645, 2831, 2868, 2924
FriOI	GRGCYC	2 cut(s)	351, 2023
FspBI	CTAG	9 cut(s)	1031, 1368, 1487, 1812, 2108, 2307, 2436, 2759, 2999
FspI	TGCGCA	1 cut(s)	2470
GlaI	GCGC	2 cut(s)	18, 2470
GsaI	CCCAGC	1 cut(s)	1412
GsuI	CTGGAG	2 cut(s)	152, 1726
HaeIII	GGCC	6 cut(s)	54, 123, 495, 1043, 1919, 3017
HapII	CCGG	5 cut(s)	23, 43, 55, 543, 599
HgaI	GACGC	4 cut(s)	184, 917, 1264, 2533
HhaI	GCGC	2 cut(s)	19, 2471
Hin1I	GRCGYC	1 cut(s)	176
Hin6I	GCGC	2 cut(s)	17, 2469
HinP1I	GCGC	2 cut(s)	17, 2469
HincII	GTYRAC	3 cut(s)	2203, 2946, 2992
HindII	GTYRAC	3 cut(s)	2203, 2946, 2992
HindIII	AAGCTT	3 cut(s)	1131, 1377, 1611
HpaI	GTTAAC	1 cut(s)	2203
HpaII	CCGG	5 cut(s)	23, 43, 55, 543, 599
Hpy166II	GTNNAC	9 cut(s)	1106, 1576, 1666, 2203, 2731, 2891, 2946, 2963, 2992
Hpy8I	GTNNAC	9 cut(s)	1106, 1576, 1666, 2203, 2731, 2891, 2946, 2963, 2992
HpyAV	CCTTC	6 cut(s)	307, 571, 691, 1948, 2673, 2779
HpyCH4III	ACNGT	4 cut(s)	131, 963, 1602, 1989
HpyCH4IV	ACGT	3 cut(s)	1737, 2925, 3052
HpyF10VI	GCNNNNNNNGC	8 cut(s)	70, 262, 801, 1125, 1385, 1969, 2003, 2586
HpyF3I	CTNAG	5 cut(s)	365, 1187, 1413, 2675, 2880
HpySE526I	ACGT	3 cut(s)	1737, 2925, 3052
Hsp92I	GRCGYC	1 cut(s)	176
HspAI	GCGC	2 cut(s)	17, 2469
KroI	GCCGGC	1 cut(s)	54
KroNI	GCCGGC	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	2743
KspAI	GTTAAC	1 cut(s)	2203
LguI	GCTCTTC	1 cut(s)	323
LmnI	GCTCC	4 cut(s)	171, 346, 738, 1803
MaeI	CTAG	9 cut(s)	1031, 1368, 1487, 1812, 2108, 2307, 2436, 2759, 2999
MaeII	ACGT	3 cut(s)	1737, 2925, 3052
MaeIII	GTNAC	8 cut(s)	125, 156, 601, 1433, 1715, 1733, 2265, 2768
MbiI	CCGCTC	2 cut(s)	741, 1997
MflI	RGATCY	5 cut(s)	1144, 1201, 1483, 1768, 2079
MhlI	GDGCHC	5 cut(s)	232, 351, 1692, 2023, 2626
MlyI	GAGTC	5 cut(s)	164, 225, 2180, 2450, 2756
MmeI	TCCRAC	3 cut(s)	300, 1281, 1454
Mph1103I	ATGCAT	3 cut(s)	2221, 2418, 2460
MroNI	GCCGGC	1 cut(s)	54
MroXI	GAANNNNTTC	2 cut(s)	785, 1989
MslI	CAYNNNNRTG	4 cut(s)	356, 1661, 2688, 2721
MspA1I	CMGCKG	2 cut(s)	213, 2580
MspI	CCGG	5 cut(s)	23, 43, 55, 543, 599
MspR9I	CCNGG	1 cut(s)	599
Mva1269I	GAATGC	1 cut(s)	890
MvnI	CGCG	2 cut(s)	188, 459
MwoI	GCNNNNNNNGC	8 cut(s)	70, 262, 801, 1125, 1385, 1969, 2003, 2586
NaeI	GCCGGC	1 cut(s)	56
NciI	CCSGG	1 cut(s)	599
NdeI	CATATG	1 cut(s)	2131
NgoMIV	GCCGGC	1 cut(s)	54
NlaIV	GGNNCC	5 cut(s)	389, 556, 1770, 2081, 2623
NmeAIII	GCCGAG	3 cut(s)	555, 589, 2956
NmuCI	GTSAC	6 cut(s)	125, 156, 1433, 1715, 1733, 2768
NsbI	TGCGCA	1 cut(s)	2470
NsiI	ATGCAT	3 cut(s)	2221, 2418, 2460
NspI	RCATGY	6 cut(s)	852, 1546, 2219, 2469, 2726, 2897
OliI	CACNNNNGTG	1 cut(s)	1661
PaeI	GCATGC	2 cut(s)	852, 2469
PagI	TCATGA	1 cut(s)	2530
PciI	ACATGT	3 cut(s)	1542, 2722, 2893
PciSI	GCTCTTC	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	5 cut(s)	444, 447, 450, 515, 527
PctI	GAATGC	1 cut(s)	890
PdiI	GCCGGC	1 cut(s)	56
PdmI	GAANNNNTTC	2 cut(s)	785, 1989
PfeI	GAWTC	5 cut(s)	106, 1881, 2044, 2489, 2495
PflMI	CCANNNNNTGG	1 cut(s)	1855
Ple19I	CGATCG	1 cut(s)	457
PleI	GAGTC	5 cut(s)	163, 224, 2180, 2449, 2756
PpsI	GAGTC	5 cut(s)	163, 224, 2180, 2449, 2756
Ppu21I	YACGTR	1 cut(s)	3053
PscI	ACATGT	3 cut(s)	1542, 2722, 2893
PshAI	GACNNNNGTC	1 cut(s)	2766
Psp124BI	GAGCTC	2 cut(s)	351, 2023
Psp1406I	AACGTT	1 cut(s)	2925
PspEI	GGTNACC	1 cut(s)	1715
PspFI	CCCAGC	1 cut(s)	1408
PspN4I	GGNNCC	5 cut(s)	389, 556, 1770, 2081, 2623
PspPI	GGNCC	7 cut(s)	25, 45, 627, 1576, 1918, 2111, 3016
PstI	CTGCAG	1 cut(s)	1103
PstNI	CAGNNNCTG	3 cut(s)	670, 1535, 2477
PsuI	RGATCY	5 cut(s)	1144, 1201, 1483, 1768, 2079
PvuI	CGATCG	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	2580
RsaI	GTAC	5 cut(s)	818, 1343, 1740, 2154, 2892
RsaNI	GTAC	5 cut(s)	817, 1342, 1739, 2153, 2891
RseI	CAYNNNNRTG	4 cut(s)	356, 1661, 2688, 2721
Rsr2I	CGGWCCG	1 cut(s)	45
RsrII	CGGWCCG	1 cut(s)	45
SacI	GAGCTC	2 cut(s)	351, 2023
SapI	GCTCTTC	1 cut(s)	323
Sau96I	GGNCC	7 cut(s)	25, 45, 627, 1576, 1918, 2111, 3016
SchI	GAGTC	5 cut(s)	164, 225, 2180, 2450, 2756
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	5 cut(s)	232, 351, 1692, 2023, 2626
SfcI	CTRYAG	2 cut(s)	959, 1099
SinI	GGWCC	5 cut(s)	25, 45, 627, 1576, 2111
SmiMI	CAYNNNNRTG	4 cut(s)	356, 1661, 2688, 2721
SmlI	CTYRAG	3 cut(s)	161, 1796, 2764
SmoI	CTYRAG	3 cut(s)	161, 1796, 2764
SphI	GCATGC	2 cut(s)	852, 2469
SspMI	CTAG	9 cut(s)	1031, 1368, 1487, 1812, 2108, 2307, 2436, 2759, 2999
SstI	GAGCTC	2 cut(s)	351, 2023
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	2 cut(s)	2604, 2807
TaaI	ACNGT	4 cut(s)	131, 963, 1602, 1989
TaiI	ACGT	3 cut(s)	1740, 2928, 3055
TaqI	TCGA	7 cut(s)	378, 639, 727, 862, 1198, 2574, 2817
TaqII	GACCGA	2 cut(s)	62, 615
TatI	WGTACW	2 cut(s)	2152, 2890
TauI	GCSGC	2 cut(s)	462, 616
TfiI	GAWTC	5 cut(s)	106, 1881, 2044, 2489, 2495
TscAI	CASTG	8 cut(s)	65, 1108, 1368, 1709, 1779, 1856, 1950, 2172
TseFI	GTSAC	6 cut(s)	125, 156, 1433, 1715, 1733, 2768
Tsp45I	GTSAC	6 cut(s)	125, 156, 1433, 1715, 1733, 2768
TspGWI	ACGGA	4 cut(s)	247, 370, 1455, 2948
TspRI	CASTG	8 cut(s)	65, 1108, 1368, 1709, 1779, 1856, 1950, 2172
Van91I	CCANNNNNTGG	1 cut(s)	1855
VpaK11BI	GGWCC	5 cut(s)	25, 45, 627, 1576, 2111
XapI	RAATTY	8 cut(s)	244, 340, 1523, 1831, 2693, 2705, 2792, 2875
XbaI	TCTAGA	2 cut(s)	1486, 2758
XceI	RCATGY	6 cut(s)	852, 1546, 2219, 2469, 2726, 2897
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1586
XmiI	GTMKAC	1 cut(s)	2962
XmnI	GAANNNNTTC	2 cut(s)	785, 1989
XspI	CTAG	9 cut(s)	1031, 1368, 1487, 1812, 2108, 2307, 2436, 2759, 2999
Zsp2I	ATGCAT	3 cut(s)	2221, 2418, 2460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.