pycom10g25720
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
27257806 .. 27260697
2892 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g25720.1

Sequence Viewer

Length: 1833 bp
ATGAAGCAGTCTAACAAAAAGAAAACTTGCGTCTCTCGTAAGGGGCAACTTGTAAAGAAGCCAATAACCACCCATAAGCAAAGTTTCCGCAGTTCGTACCCTTCTTCTGCATCGGTACCTAGCTTGAAATCTTGTAATGCTATTAATGGTATATCTTGCCCACCCAAGGAGCTTGGAGGTTGTGGTGACAGCCTCCTTGATTTGAGATGTGTTTTTCCATTAAGTTGGATCAAAGACCTAGAAGTAAGTGCAGAAGAAATAGTTTGCAGCTATGACTTTCCAGAAACTGCTGACATGTCTTTGTGCTGTCCACTATGTTTGGGCGTGGACCAGAAAACTGATGGGATTCAACAGTTGCAAGAAGCTTCAGTGAGAGAGAACTCAAACGATAACTACTTATACTACCCAACGCTGTTGGGCACAAATGGTGATAATGTTGAGCACTTTCAGAAGCACTGGAGTAAAGGTCATCCTGTAATAGTCCGAGATGTACTTCAAACTACATCAGATTTGACTTGGGATCCAGTGTCCATGTTCTGCACTTATCTTGAAGGGAGCATTGCTAGATATGAAAATAACACAAATTCAAATGAAGCTATCCACTGCTTGGATTGGTGCGAGGTGGAACTTGGAATCAGGCAGTATTTCATGGGTTCATTAAGGGGGCAGGCCCAACGAAATGTATGGAATGAGACACTGAAGTTGAAGGGTTGGCTTTCTTCGCAGTTGTTTCAGGAACAGTTTCCGGTTCATTATGCTGAAGTAATACGAGCTCTACCACTTCAAGAATACATGAATCCCATGTCTGGGCTTTTAAATCTTGCTGCAAGGATGCCACAAGAAATCCCAAAACCTGATCTAGGTCCGTGTGTTTATATATCATACGGCTGCACCGAGCAACTTGTACAAGCTAATGCAGTGATGAAGCTATGTTATGACTCATATGATGTGGTTAACATTTTGGCACATACATCAGATGTCCCTATCTCTGATGAACAAGTTTCAAAAATAAGAAAGTTACTGAAAAAGCACAAGGCTCAATATCAGAGGGAGGTCTCTAGGGTTACTTGTGAACAATTTGTGGCAAAAAAAGACAATGGAGAATCATTATTGTTTAGTGAAACCATGAAAGAAGCAGGGCTACATAATGTGATCGGAGAGGAGATGCATTTACGCAAAAGAATTGCTAGAGAGTCTTGCTTCTCCACGCATGAAGCATGCACAGATGCTGAAACATCTGATTCTGATACTGATTCTGAAGCCACACTAAGTAGCTCTGGGAGACTTCATGATGCTGAAACATCTAAAGATACAAAGTGTGAGGTTCTGGTCGACAGCTGCAATAGCTATGAAAAGCAAACCTTGGACAAGTCTTGTGGTGCCCAATGGGATGTGTTTCGCAGACAAGATGTCCCAAAACTTATAGAATATCTCAGAAGGCACTCTAATGAATTTGCTCGTAAATTTGACTTTCATAAGCATGTTGTTCATCCCATTCTTGATCAGAGTTTCTTTCTAGACTCAAGTCACAAATTAAGGCTCAAGGAGGAATTTGAAATTGAGCCTTGGACTTTCGAGCAACACATAGGAGAAGCTGTTATCATACCTGCTGGATGCCCATATCAGATTAGGAATTCTAAGTCTTGTGTGCATGTGGTGCTGGACTTTGTATCACCTGAAAATGTTGCCGAGTGCATCCAGTTAACTGATGAAGTCCGTCTGCTTCCAGCGGACCATAAAGCAAAAGTTGACAAGCTAGAGGTGAAGAGAATGGCCCTTAATAGTATTAGTTCAGCAATCAAAGAAATACGTGAGCTTACTTGTGCAATGTAA

Protein Analysis

611

Amino Acids

69.16

Weight (kDa)

5.84

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 452 - 556 1e-11 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1615
Acc65I GGTACC 1 cut(s) 115
AccB1I GGYRCC 2 cut(s) 115, 1379
AccB7I CCANNNNNTGG 1 cut(s) 607
AccI GTMKAC 1 cut(s) 1332
AciI CCGC 2 cut(s) 88, 1730
AclWI GGATC 3 cut(s) 236, 515, 528
AcsI RAATTY 5 cut(s) 583, 1451, 1463, 1550, 1633
AcuI CTGAAG 4 cut(s) 351, 719, 780, 1278
AfaI GTAC 4 cut(s) 98, 117, 492, 906
AfiI CCNNNNNNNGG 5 cut(s) 166, 607, 806, 807, 860
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 9 cut(s) 127, 350, 497, 551, 588, 706, 785, 1005, 1556
AhdI GACNNNNNGTC 1 cut(s) 1409
Alw21I GWGCWC 2 cut(s) 444, 775
Alw26I GTCTC 4 cut(s) 37, 686, 1060, 1276
AlwI GGATC 3 cut(s) 236, 515, 528
AlwNI CAGNNNCTG 2 cut(s) 287, 1229
AoxI GGCC 2 cut(s) 669, 1773
ApeKI GCWGC 4 cut(s) 267, 824, 888, 1338
ApoI RAATTY 5 cut(s) 583, 1451, 1463, 1550, 1633
AseI ATTAAT 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 741
Asp718I GGTACC 1 cut(s) 115
AspS9I GGNCC 5 cut(s) 328, 670, 863, 1732, 1774
AsuHPI GGTGA 4 cut(s) 197, 440, 1665, 1774
AvaII GGWCC 3 cut(s) 328, 863, 1732
BaeGI GKGCMC 2 cut(s) 422, 1384
BamHI GGATCC 1 cut(s) 520
BanI GGYRCC 2 cut(s) 115, 1379
BanII GRGCYC 1 cut(s) 775
BarI GAAGNNNNNNTAC 2 cut(s) 1125, 1157
Bbv12I GWGCWC 2 cut(s) 444, 775
BbvI GCAGC 4 cut(s) 279, 811, 875, 1325
BccI CCATC 1 cut(s) 335
BceAI ACGGC 1 cut(s) 901
BclI TGATCA 1 cut(s) 1501
BcoDI GTCTC 4 cut(s) 37, 686, 1060, 1276
BfaI CTAG 8 cut(s) 120, 239, 564, 860, 1059, 1188, 1517, 1757
BfuAI ACCTGC 1 cut(s) 1615
BisI GCNGC 4 cut(s) 268, 825, 889, 1339
BlsI GCNGC 4 cut(s) 269, 826, 890, 1340
Bme18I GGWCC 3 cut(s) 328, 863, 1732
BmeRI GACNNNNNGTC 1 cut(s) 1409
BmgT120I GGNCC 5 cut(s) 328, 670, 863, 1732, 1774
BmiI GGNNCC 3 cut(s) 117, 522, 1381
BmsI GCATC 7 cut(s) 119, 822, 1155, 1216, 1282, 1604, 1704
BoxI GACNNNNGTC 1 cut(s) 1524
BpmI CTGGAG 1 cut(s) 478
BpuEI CTTGAG 2 cut(s) 1507, 1526
BsaAI YACGTR 1 cut(s) 1811
BsaI GGTCTC 1 cut(s) 1060
BsaJI CCNNGG 3 cut(s) 165, 1362, 1565
BsaWI WCCGGW 1 cut(s) 745
BsaXI ACNNNNNCTCC 4 cut(s) 451, 481, 1581, 1611
Bsc4I CCNNNNNNNGG 5 cut(s) 166, 607, 806, 807, 860
Bse1I ACTGG 3 cut(s) 461, 524, 1699
Bse3DI GCAATG 2 cut(s) 558, 1833
BseDI CCNNGG 3 cut(s) 165, 1362, 1565
BseGI GGATG 6 cut(s) 469, 837, 1396, 1489, 1619, 1695
BseLI CCNNNNNNNGG 5 cut(s) 166, 607, 806, 807, 860
BseMI GCAATG 2 cut(s) 558, 1833
BseMII CTCAG 1 cut(s) 1447
BseNI ACTGG 3 cut(s) 461, 524, 1699
BseRI GAGGAG 1 cut(s) 1175
BseSI GKGCMC 2 cut(s) 422, 1384
BseXI GCAGC 4 cut(s) 279, 811, 875, 1325
BsgI GTGCAG 3 cut(s) 270, 523, 874
BshFI GGCC 2 cut(s) 671, 1775
BshNI GGYRCC 2 cut(s) 115, 1379
BsiHKAI GWGCWC 2 cut(s) 444, 775
BsiSI CCGG 1 cut(s) 746
BslFI GGGAC 2 cut(s) 965, 1397
BslI CCNNNNNNNGG 5 cut(s) 166, 607, 806, 807, 860
BsmAI GTCTC 4 cut(s) 37, 686, 1060, 1276
BsmBI CGTCTC 1 cut(s) 37
BsmFI GGGAC 2 cut(s) 965, 1397
BsnI GGCC 2 cut(s) 671, 1775
Bso31I GGTCTC 1 cut(s) 1060
Bsp1286I GDGCHC 4 cut(s) 422, 444, 775, 1384
Bsp1407I TGTACA 1 cut(s) 904
Bsp143I GATC 5 cut(s) 228, 520, 856, 1152, 1501
BspACI CCGC 2 cut(s) 88, 1730
BspANI GGCC 2 cut(s) 671, 1775
BspCNI CTCAG 1 cut(s) 1446
BspHI TCATGA 1 cut(s) 1288
BspLI GGNNCC 3 cut(s) 117, 522, 1381
BspMI ACCTGC 1 cut(s) 1615
BspPI GGATC 3 cut(s) 236, 515, 528
BspT107I GGYRCC 2 cut(s) 115, 1379
BspTNI GGTCTC 1 cut(s) 1060
BsrDI GCAATG 2 cut(s) 558, 1833
BsrGI TGTACA 1 cut(s) 904
BsrI ACTGG 3 cut(s) 461, 524, 1699
BssECI CCNNGG 3 cut(s) 165, 1362, 1565
BssMI GATC 5 cut(s) 228, 520, 856, 1152, 1501
BssT1I CCWWGG 3 cut(s) 165, 1362, 1565
Bst4CI ACNGT 2 cut(s) 354, 741
Bst6I CTCTTC 1 cut(s) 1760
BstAPI GCANNNNNTGC 1 cut(s) 1657
BstAUI TGTACA 1 cut(s) 904
BstBAI YACGTR 1 cut(s) 1811
BstC8I GCNNGC 2 cut(s) 669, 1219
BstDEI CTNAG 3 cut(s) 1268, 1433, 1638
BstENI CCTNNNNNAGG 1 cut(s) 858
BstF5I GGATG 6 cut(s) 469, 837, 1396, 1489, 1619, 1695
BstKTI GATC 5 cut(s) 231, 523, 859, 1155, 1504
BstMAI GTCTC 4 cut(s) 37, 686, 1060, 1276
BstMBI GATC 5 cut(s) 228, 520, 856, 1152, 1501
BstMWI GCNNNNNNNGC 3 cut(s) 721, 1344, 1657
BstNSI RCATGY 4 cut(s) 298, 1221, 1484, 1655
BstPAI GACNNNNGTC 1 cut(s) 1524
BstSLI GKGCMC 2 cut(s) 422, 1384
BstV1I GCAGC 4 cut(s) 279, 811, 875, 1325
BstX2I RGATCY 1 cut(s) 520
BstXI CCANNNNNNTGG 1 cut(s) 225
BstYI RGATCY 1 cut(s) 520
BsuRI GGCC 2 cut(s) 671, 1775
BtsCI GGATG 6 cut(s) 469, 837, 1396, 1489, 1619, 1695
BtsI GCAGTG 2 cut(s) 601, 924
BtsIMutI CAGTG 6 cut(s) 375, 454, 531, 601, 695, 924
BveI ACCTGC 1 cut(s) 1615
Cac8I GCNNGC 2 cut(s) 669, 1219
CaiI CAGNNNCTG 2 cut(s) 287, 1229
CciI TCATGA 1 cut(s) 1288
Cfr13I GGNCC 5 cut(s) 328, 670, 863, 1732, 1774
CseI GACGC 1 cut(s) 19
Csp6I GTAC 4 cut(s) 97, 116, 491, 905
CspCI CAANNNNNGTGG 4 cut(s) 300, 335, 1357, 1392
CviQI GTAC 4 cut(s) 97, 116, 491, 905
DdeI CTNAG 3 cut(s) 1268, 1433, 1638
DpnI GATC 5 cut(s) 230, 522, 858, 1154, 1503
DpnII GATC 5 cut(s) 228, 520, 856, 1152, 1501
DraI TTTAAA 1 cut(s) 816
DriI GACNNNNNGTC 1 cut(s) 1409
Eam1104I CTCTTC 1 cut(s) 1760
Eam1105I GACNNNNNGTC 1 cut(s) 1409
EarI CTCTTC 1 cut(s) 1760
Ecl136II GAGCTC 1 cut(s) 773
Eco130I CCWWGG 3 cut(s) 165, 1362, 1565
Eco24I GRGCYC 1 cut(s) 775
Eco31I GGTCTC 1 cut(s) 1060
Eco47I GGWCC 3 cut(s) 328, 863, 1732
Eco53kI GAGCTC 1 cut(s) 773
Eco57I CTGAAG 4 cut(s) 351, 719, 780, 1278
EcoICRI GAGCTC 1 cut(s) 773
EcoNI CCTNNNNNAGG 1 cut(s) 858
EcoRI GAATTC 1 cut(s) 1633
EcoT14I CCWWGG 3 cut(s) 165, 1362, 1565
EcoT22I ATGCAT 1 cut(s) 1170
EcoT38I GRGCYC 1 cut(s) 775
ErhI CCWWGG 3 cut(s) 165, 1362, 1565
Esp3I CGTCTC 1 cut(s) 37
FalI AAGNNNNNCTT 2 cut(s) 1346, 1378
FaqI GGGAC 2 cut(s) 965, 1397
FauNDI CATATG 1 cut(s) 943
FbaI TGATCA 1 cut(s) 1501
FblI GTMKAC 1 cut(s) 1332
Fnu4HI GCNGC 4 cut(s) 268, 825, 889, 1339
FokI GGATG 6 cut(s) 456, 844, 1403, 1476, 1626, 1682
FriOI GRGCYC 1 cut(s) 775
Fsp4HI GCNGC 4 cut(s) 268, 825, 889, 1339
FspBI CTAG 8 cut(s) 120, 239, 564, 860, 1059, 1188, 1517, 1757
GluI GCNGC 4 cut(s) 268, 825, 889, 1339
GsuI CTGGAG 1 cut(s) 478
HaeIII GGCC 2 cut(s) 671, 1775
HapII CCGG 1 cut(s) 746
HgaI GACGC 1 cut(s) 19
HincII GTYRAC 4 cut(s) 955, 1333, 1704, 1750
HindII GTYRAC 4 cut(s) 955, 1333, 1704, 1750
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 9 cut(s) 346, 633, 796, 938, 1103, 1193, 1241, 1253, 1520
HpaI GTTAAC 2 cut(s) 955, 1704
HpaII CCGG 1 cut(s) 746
HphI GGTGA 4 cut(s) 197, 440, 1665, 1774
Hpy166II GTNNAC 7 cut(s) 311, 328, 955, 1073, 1333, 1704, 1750
Hpy188III TCNNGA 7 cut(s) 281, 548, 734, 785, 1289, 1499, 1517
Hpy8I GTNNAC 7 cut(s) 311, 328, 955, 1073, 1333, 1704, 1750
HpyAV CCTTC 4 cut(s) 111, 545, 700, 1431
HpyCH4III ACNGT 2 cut(s) 354, 741
HpyCH4IV ACGT 1 cut(s) 1810
HpyF10VI GCNNNNNNNGC 3 cut(s) 721, 1344, 1657
HpyF3I CTNAG 3 cut(s) 1268, 1433, 1638
HpySE526I ACGT 1 cut(s) 1810
KpnI GGTACC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 1501
KspAI GTTAAC 2 cut(s) 955, 1704
Kzo9I GATC 5 cut(s) 228, 520, 856, 1152, 1501
LmnI GCTCC 2 cut(s) 169, 555
Lsp1109I GCAGC 4 cut(s) 279, 811, 875, 1325
LweI GCATC 7 cut(s) 119, 822, 1155, 1216, 1282, 1604, 1704
MaeI CTAG 8 cut(s) 120, 239, 564, 860, 1059, 1188, 1517, 1757
MaeII ACGT 1 cut(s) 1810
MaeIII GTNAC 4 cut(s) 185, 1017, 1063, 1526
MalI GATC 5 cut(s) 230, 522, 858, 1154, 1503
MboI GATC 5 cut(s) 228, 520, 856, 1152, 1501
MboII GAAGA 4 cut(s) 96, 266, 711, 1777
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 4 cut(s) 422, 444, 775, 1384
MluCI AATT 9 cut(s) 583, 1076, 1182, 1451, 1463, 1532, 1550, 1557, 1633
MlyI GAGTC 3 cut(s) 932, 1202, 1514
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 9 cut(s) 170, 203, 613, 1041, 1045, 1153, 1315, 1540, 1753
Mph1103I ATGCAT 1 cut(s) 1170
MroXI GAANNNNTTC 1 cut(s) 741
MseI TTAA 8 cut(s) 144, 221, 659, 815, 954, 1535, 1703, 1779
MslI CAYNNNNRTG 2 cut(s) 1446, 1479
MspA1I CMGCKG 2 cut(s) 1338, 1730
MspI CCGG 1 cut(s) 746
MwoI GCNNNNNNNGC 3 cut(s) 721, 1344, 1657
NdeI CATATG 1 cut(s) 943
NdeII GATC 5 cut(s) 228, 520, 856, 1152, 1501
NlaIV GGNNCC 3 cut(s) 117, 522, 1381
NmeAIII GCCGAG 1 cut(s) 1714
NmuCI GTSAC 2 cut(s) 185, 1526
NsiI ATGCAT 1 cut(s) 1170
NspI RCATGY 4 cut(s) 298, 1221, 1484, 1655
PaeI GCATGC 1 cut(s) 1221
PagI TCATGA 1 cut(s) 1288
PciI ACATGT 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 891
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 6 cut(s) 346, 633, 796, 1103, 1241, 1253
PflMI CCANNNNNTGG 1 cut(s) 607
PkrI GCNGC 4 cut(s) 269, 826, 890, 1340
PleI GAGTC 3 cut(s) 932, 1201, 1514
PpsI GAGTC 3 cut(s) 932, 1201, 1514
Ppu21I YACGTR 1 cut(s) 1811
PscI ACATGT 1 cut(s) 294
PshAI GACNNNNGTC 1 cut(s) 1524
PshBI ATTAAT 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 775
PspN4I GGNNCC 3 cut(s) 117, 522, 1381
PspPI GGNCC 5 cut(s) 328, 670, 863, 1732, 1774
PstNI CAGNNNCTG 2 cut(s) 287, 1229
PsuI RGATCY 1 cut(s) 520
PvuII CAGCTG 1 cut(s) 1338
RsaI GTAC 4 cut(s) 98, 117, 492, 906
RsaNI GTAC 4 cut(s) 97, 116, 491, 905
RseI CAYNNNNRTG 2 cut(s) 1446, 1479
SacI GAGCTC 1 cut(s) 775
SalI GTCGAC 1 cut(s) 1331
SaqAI TTAA 8 cut(s) 144, 221, 659, 815, 954, 1535, 1703, 1779
SatI GCNGC 4 cut(s) 268, 825, 889, 1339
Sau3AI GATC 5 cut(s) 228, 520, 856, 1152, 1501
Sau96I GGNCC 5 cut(s) 328, 670, 863, 1732, 1774
SchI GAGTC 3 cut(s) 932, 1202, 1514
SduI GDGCHC 4 cut(s) 422, 444, 775, 1384
SfaNI GCATC 7 cut(s) 119, 822, 1155, 1216, 1282, 1604, 1704
SinI GGWCC 3 cut(s) 328, 863, 1732
SmiMI CAYNNNNRTG 2 cut(s) 1446, 1479
SmlI CTYRAG 2 cut(s) 1522, 1541
SmoI CTYRAG 2 cut(s) 1522, 1541
SphI GCATGC 1 cut(s) 1221
Sse9I AATT 9 cut(s) 583, 1076, 1182, 1451, 1463, 1532, 1550, 1557, 1633
SsiI CCGC 2 cut(s) 88, 1730
SspMI CTAG 8 cut(s) 120, 239, 564, 860, 1059, 1188, 1517, 1757
SstI GAGCTC 1 cut(s) 775
StyI CCWWGG 3 cut(s) 165, 1362, 1565
TaaI ACNGT 2 cut(s) 354, 741
TaiI ACGT 1 cut(s) 1813
TaqI TCGA 2 cut(s) 1332, 1575
TasI AATT 9 cut(s) 583, 1076, 1182, 1451, 1463, 1532, 1550, 1557, 1633
TatI WGTACW 2 cut(s) 490, 904
TfiI GAWTC 6 cut(s) 346, 633, 796, 1103, 1241, 1253
Tru1I TTAA 8 cut(s) 144, 221, 659, 815, 954, 1535, 1703, 1779
Tru9I TTAA 8 cut(s) 144, 221, 659, 815, 954, 1535, 1703, 1779
TscAI CASTG 6 cut(s) 375, 461, 531, 608, 702, 924
TseFI GTSAC 2 cut(s) 185, 1526
TseI GCWGC 4 cut(s) 267, 824, 888, 1338
Tsp45I GTSAC 2 cut(s) 185, 1526
TspGWI ACGGA 2 cut(s) 855, 1706
TspRI CASTG 6 cut(s) 375, 461, 531, 608, 702, 924
Van91I CCANNNNNTGG 1 cut(s) 607
VpaK11BI GGWCC 3 cut(s) 328, 863, 1732
VspI ATTAAT 1 cut(s) 144
XagI CCTNNNNNAGG 1 cut(s) 858
XapI RAATTY 5 cut(s) 583, 1451, 1463, 1550, 1633
XbaI TCTAGA 1 cut(s) 1516
XceI RCATGY 4 cut(s) 298, 1221, 1484, 1655
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 1332
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 8 cut(s) 120, 239, 564, 860, 1059, 1188, 1517, 1757
Zsp2I ATGCAT 1 cut(s) 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.