RLG00000031337

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003373
Physical Location & Seq
Forward (+)
4204373 .. 4204978
606 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031337

Sequence Viewer

Length: 519 bp
ATGGAGGTTTTGAATAAAAGTCACTCCAACTTTTTCGGAGCTGAGTATACCAGAACCCTAGGGTCTTTGGTAGCAAGGCGGCGGCATCTGGTTCGCTCCTTGCCTGTCAGGGGACGTTTTCCGGCGCCGTTCCTATCTGGTGTGAGACGCCAGATTGTGCAGCAGAGGGGAGTAATCTCATATTTGGGATCGGGGATGAAAGGCATATCTGGCCGAGCAATGGGTGTCGGGCTTCTTCCGGCTGTGAGACTACCTTCCAGGTCGGACCCAGGTCCCTCGAGGAGGCGGGAATGGTTGAAGATCGCGGTCGTCTGCCGGAATGACAGTGGCAGCTTGTTTGCTTGGTGTGGTAGCAGTGCCTCCGGCAAGCTTCCTGGAGTTCCGATGATCGATGGTCTAGGTTGCAGATTGAGGACAGTGGGTGTGGGCTGGGCTTCTAGCTTCAATCCATTCTCCCTCCTCTCTCTTGGTCGGGCCGGGGCTCTTGTTGGGCTAGACTTCAATATGACTCTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.51

Weight (kDa)

11.74

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 277
AccB1I GGYRCC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 47
AccII CGCG 1 cut(s) 305
AciI CCGC 4 cut(s) 79, 82, 286, 305
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 211
AcyI GRCGYC 2 cut(s) 125, 148
AfiI CCNNNNNNNGG 3 cut(s) 110, 220, 282
AgsI TTSAA 4 cut(s) 13, 298, 445, 502
AjnI CCWGG 3 cut(s) 257, 268, 373
AluBI AGCT 4 cut(s) 41, 333, 370, 441
AluI AGCT 4 cut(s) 41, 333, 370, 441
Alw26I GTCTC 2 cut(s) 139, 241
AlwI GGATC 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 277
AoxI GGCC 2 cut(s) 211, 474
ApeKI GCWGC 2 cut(s) 160, 330
AspA2I CCTAGG 1 cut(s) 58
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 3 cut(s) 265, 272, 474
AsuC2I CCSGG 1 cut(s) 478
AvaI CYCGRG 1 cut(s) 277
AvaII GGWCC 2 cut(s) 265, 272
AvrII CCTAGG 1 cut(s) 58
BanI GGYRCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 484
BbvI GCAGC 2 cut(s) 172, 342
BccI CCATC 1 cut(s) 386
BceAI ACGGC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 3 cut(s) 259, 270, 375
BcnI CCSGG 1 cut(s) 478
BcoDI GTCTC 2 cut(s) 139, 241
BfaI CTAG 4 cut(s) 59, 398, 438, 494
BfoI RGCGCY 1 cut(s) 128
BisI GCNGC 4 cut(s) 80, 83, 161, 331
BlnI CCTAGG 1 cut(s) 58
BlsI GCNGC 4 cut(s) 81, 84, 162, 332
Bme1390I CCNGG 4 cut(s) 259, 270, 375, 478
Bme18I GGWCC 2 cut(s) 265, 272
BmeT110I CYCGRG 1 cut(s) 277
BmgT120I GGNCC 3 cut(s) 265, 272, 474
BmiI GGNNCC 3 cut(s) 126, 267, 274
BmrFI CCNGG 4 cut(s) 259, 270, 375, 478
BmsI GCATC 1 cut(s) 94
BoxI GACNNNNGTC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 396
BpuMI CCSGG 1 cut(s) 478
Bsa29I ATCGAT 1 cut(s) 390
BsaHI GRCGYC 2 cut(s) 125, 148
BsaJI CCNNGG 3 cut(s) 58, 268, 477
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 220, 282
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 3 cut(s) 259, 270, 375
BseCI ATCGAT 1 cut(s) 390
BseDI CCNNGG 3 cut(s) 58, 268, 477
BseGI GGATG 1 cut(s) 201
BseLI CCNNNNNNNGG 3 cut(s) 110, 220, 282
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 33
BseRI GAGGAG 2 cut(s) 295, 449
BseXI GCAGC 2 cut(s) 172, 342
BseYI CCCAGC 1 cut(s) 429
BsgI GTGCAG 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 2 cut(s) 213, 476
BshNI GGYRCC 1 cut(s) 124
BshVI ATCGAT 1 cut(s) 390
BsiEI CGRYCG 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 277
BsiSI CCGG 5 cut(s) 122, 239, 316, 363, 477
BslFI GGGAC 2 cut(s) 126, 258
BslI CCNNNNNNNGG 3 cut(s) 110, 220, 282
BsmAI GTCTC 2 cut(s) 139, 241
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 2 cut(s) 126, 258
BsnI GGCC 2 cut(s) 213, 476
BsoBI CYCGRG 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 484
Bsp143I GATC 3 cut(s) 188, 300, 387
BspACI CCGC 4 cut(s) 79, 82, 286, 305
BspANI GGCC 2 cut(s) 213, 476
BspCNI CTCAG 1 cut(s) 34
BspDI ATCGAT 1 cut(s) 390
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 3 cut(s) 126, 267, 274
BspPI GGATC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 225
BssECI CCNNGG 3 cut(s) 58, 268, 477
BssMI GATC 3 cut(s) 188, 300, 387
BssNAI GTATAC 1 cut(s) 48
BssNI GRCGYC 2 cut(s) 125, 148
BssT1I CCWWGG 1 cut(s) 58
Bst1107I GTATAC 1 cut(s) 48
Bst2UI CCWGG 3 cut(s) 259, 270, 375
Bst4CI ACNGT 2 cut(s) 326, 418
BstACI GRCGYC 2 cut(s) 125, 148
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 1 cut(s) 42
BstENI CCTNNNNNAGG 1 cut(s) 280
BstF5I GGATG 1 cut(s) 201
BstFNI CGCG 1 cut(s) 305
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 3 cut(s) 191, 303, 390
BstMAI GTCTC 2 cut(s) 139, 241
BstMBI GATC 3 cut(s) 188, 300, 387
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 3 cut(s) 259, 270, 375
BstPAI GACNNNNGTC 1 cut(s) 270
BstSCI CCNGG 4 cut(s) 257, 268, 373, 476
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 2 cut(s) 172, 342
BstZ17I GTATAC 1 cut(s) 48
Bsu15I ATCGAT 1 cut(s) 390
BsuRI GGCC 2 cut(s) 213, 476
BsuTUI ATCGAT 1 cut(s) 390
BtsCI GGATG 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 3 cut(s) 331, 361, 423
Cac8I GCNNGC 1 cut(s) 368
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 3 cut(s) 265, 272, 474
ClaI ATCGAT 1 cut(s) 390
CseI GACGC 1 cut(s) 156
DdeI CTNAG 1 cut(s) 42
DinI GGCGCC 1 cut(s) 126
DpnI GATC 3 cut(s) 190, 302, 389
DpnII GATC 3 cut(s) 188, 300, 387
EaeI YGGCCR 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 265, 272
Eco88I CYCGRG 1 cut(s) 277
EcoNI CCTNNNNNAGG 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 3 cut(s) 257, 268, 373
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 484
EgeI GGCGCC 1 cut(s) 126
EheI GGCGCC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 139
FaiI YATR 4 cut(s) 48, 181, 206, 506
FaqI GGGAC 2 cut(s) 126, 258
FauI CCCGC 1 cut(s) 279
FblI GTMKAC 1 cut(s) 47
Fnu4HI GCNGC 4 cut(s) 80, 83, 161, 331
FokI GGATG 1 cut(s) 208
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 4 cut(s) 80, 83, 161, 331
FspBI CTAG 4 cut(s) 59, 398, 438, 494
GlaI GCGC 1 cut(s) 126
GluI GCNGC 4 cut(s) 80, 83, 161, 331
GsaI CCCAGC 1 cut(s) 433
GsuI CTGGAG 1 cut(s) 396
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 2 cut(s) 213, 476
HapII CCGG 5 cut(s) 122, 239, 316, 363, 477
HgaI GACGC 1 cut(s) 156
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 2 cut(s) 125, 148
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 1 cut(s) 508
HpaII CCGG 5 cut(s) 122, 239, 316, 363, 477
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 3 cut(s) 38, 265, 384
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 264
HpyCH4III ACNGT 2 cut(s) 326, 418
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 160, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 2 cut(s) 125, 148
HspAI GCGC 1 cut(s) 125
KasI GGCGCC 1 cut(s) 124
Kzo9I GATC 3 cut(s) 188, 300, 387
LmnI GCTCC 2 cut(s) 38, 101
Lsp1109I GCAGC 2 cut(s) 172, 342
LweI GCATC 1 cut(s) 94
MaeI CTAG 4 cut(s) 59, 398, 438, 494
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 20
MalI GATC 3 cut(s) 190, 302, 389
MboI GATC 3 cut(s) 188, 300, 387
MboII GAAGA 2 cut(s) 227, 310
MhlI GDGCHC 1 cut(s) 484
MluCI AATT 1 cut(s) 513
Mly113I GGCGCC 1 cut(s) 125
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 2 cut(s) 51, 243
MnlI CCTC 8 cut(s) 159, 273, 276, 286, 370, 405, 467, 470
MspI CCGG 5 cut(s) 122, 239, 316, 363, 477
MspR9I CCNGG 4 cut(s) 259, 270, 375, 478
MvaI CCWGG 3 cut(s) 259, 270, 375
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 210
NarI GGCGCC 1 cut(s) 125
NciI CCSGG 1 cut(s) 478
NdeII GATC 3 cut(s) 188, 300, 387
NlaIV GGNNCC 3 cut(s) 126, 267, 274
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 277
PfoI TCCNGGA 1 cut(s) 373
PkrI GCNGC 4 cut(s) 81, 84, 162, 332
PleI GAGTC 1 cut(s) 502
PluTI GGCGCC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 502
PpuMI RGGWCCY 1 cut(s) 272
PshAI GACNNNNGTC 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 3 cut(s) 257, 268, 373
PspFI CCCAGC 1 cut(s) 429
PspGI CCWGG 3 cut(s) 257, 268, 373
PspN4I GGNNCC 3 cut(s) 126, 267, 274
PspPI GGNCC 3 cut(s) 265, 272, 474
PspPPI RGGWCCY 1 cut(s) 272
PspXI VCTCGAGB 1 cut(s) 277
SatI GCNGC 4 cut(s) 80, 83, 161, 331
Sau3AI GATC 3 cut(s) 188, 300, 387
Sau96I GGNCC 3 cut(s) 265, 272, 474
SchI GAGTC 1 cut(s) 502
ScrFI CCNGG 4 cut(s) 259, 270, 375, 478
SduI GDGCHC 1 cut(s) 484
SfaNI GCATC 1 cut(s) 94
SfoI GGCGCC 1 cut(s) 126
Sfr274I CTCGAG 1 cut(s) 277
SinI GGWCC 2 cut(s) 265, 272
SlaI CTCGAG 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 1 cut(s) 513
SsiI CCGC 4 cut(s) 79, 82, 286, 305
SspDI GGCGCC 1 cut(s) 124
SspMI CTAG 4 cut(s) 59, 398, 438, 494
StyD4I CCNGG 4 cut(s) 257, 268, 373, 476
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 326, 418
TaiI ACGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 278, 390
TasI AATT 1 cut(s) 513
TauI GCSGC 2 cut(s) 82, 85
TscAI CASTG 3 cut(s) 331, 361, 423
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 160, 330
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 212
TspRI CASTG 3 cut(s) 331, 361, 423
VpaK11BI GGWCC 2 cut(s) 265, 272
XagI CCTNNNNNAGG 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 277
XmaJI CCTAGG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 47
XspI CTAG 4 cut(s) 59, 398, 438, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.