Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003373

Physical Location & Seq

Genomic Coordinates Reverse (-)

30329515 .. 30334424

Gene Structure 4910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30110.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3087 bp

ATGGGCGAGGAGGGTGCGCTGCCGGACCATCTGCGGTGCAGCCGGACCGACGGCCGGCAATGGCGGTGCAAGCGGAGGGTCATGGACGACATGAAGCTCTGCGAGATTCACTATCTGCAAGGCCGTCACCGTCAGTTCAGAGAGAAAGTCCCGGAGTCACTCAAACTCCAGAGGACGCCCAAAACCGCGGGGAAGAAAGATCAAAACTGCAGCGGAAACGGTGGCGGAGTCAAAATTAGGGCACGTAAAGTGGAGAATTTGGTGAAGCTGCTGAAGCGGAAGCGATCCGACGAGGCGGTGAAGAATTGCAAGAAGAAGAAGAGGAAGGTGAAGTTGAAGAAGAGCGAGTTGAATTTGGAGCTCATACGGATGGTGCTGAGGCGGGAGGTCGAGAAGCGGAACCAGACGACGACGAAGAAGAAGGTTGTGGAGGAGAGTGAGGAGGATGATGACGACGACGATGACGGCGGTGGTGGTCTCACCAGAGACTTGCCTAATGGCCGAATGGCAATCTCTTCGTCTTCGTCGCAGTCGCCGAGGCTTCGTTCCGGCAATGCAGGTTCCAATTCGTCTTCTGATGGGAAGGTCGGGGCTGATTTGAACCCGGTTACAATTCGGCGGCGGTGCTTTCGGTCCAAAAACATCGAGCCAATGCCTGCTGGCACATTGCAGTTTCTGCCATATAACGTGGGGAAGTTGAGGAAGGGGAAGAGGAAAAAGTGCCATTGGTGTCGAAAAAGCGGGAGCGGTGTTTCTTCCGGTCTAATTAAGTGTTCGAGTTGCCAGAAGCACTTCTTTTGCTTGAATTGCATCAAAGAAAGGTACTTTGATACACAAGATGAAGTCAAAATGGCATGCCCAGTTTGTCGAGGAACTTGCCCTTGTAAGGAATGTTCTGAAAATCAAACAAAAGACGCTGAAAGTAAGGATTATTTGGGGGTTAAGAATAAAGTTGAAGTAATACTACAGTTCCATTACCTGATCTGTATGCTTCTTCCTGTGTTAAAACAAATAAACCAAGATCAGAAAGTTGAGCTAGAAGCAGAGGCAAAAATGAGAGGGGAAAAGCTATCTGAAGTTCATATCAAGCAGGCTGAATATAGCTGCAATGAACAACACTACTGCAATAAATGCAAAGCTTCGATAGTGGATCTCCATAGAAGCTGCCCAAATTGTTCCTATAACCTCTGTCTAAGTTGTTGTCAAGATCTGTTAAGTGGGAGCCTTTTTGGTGGTATAAACACATCTCTCCTAAAGCACTCCAACAAAAAGAAAACTTGCGTCTCTGGTAAGAAGCAACTTGTAAAGAAGCCAATAACCGCCCATAACCAAAGTGTCCATAGTTTGTACCTTTCTTCTTCTGCATCAGTACCTAGCTTGAAAGCTTGTGATGCTGTTAATGGTATATCTTGCCCGGCTAAGGAGTTTGGAGGTTGTGGTGACAGCCTCCTTGATTTGAGATGTGTTTTTCCGTTAAGTTGGATCAAAGATCTAGAAGTAAGTGCAGAAGAAATAGTTTGCAGCTATGAATTTCCAGAAACTGCTGACATGTCTTTGTGCTGCCCACTATGTTTGGGCGTGGACCAGAAAGTTGATGGGCTTCAACAGTTGCAAGAAGCTTCTGTGAGAGAGAACTCAAACGATAACTACTTATTCTACCCCACGCCTGTGAACACAAATGGTGATAATGTTGAGCACTTTCAGAAACACTGGAGTAAAGGTCACCCTGTAATAGTGCGTGACGTACTTCAAGCTACATCAGATTTGAGTTGGGATCCAGTGTCCATGTTCTGCACTTATCTTGAGAGGAGCATTGCTAGATATGAAAACAACACAAATTCACATGAAGCTATCCACTGCTTGGATTGGTGCGAGGTGGAACTTGGAATCAGGCAGTATTTCATGGGTTCGTTGAGGGGGCAGGCCCAGAGAAATGTATGGAATGAGACACTGAAGTTGAAGGGTTGGCTTTCTTCGCAGTTGTTTCAGGAACAGTTTCCAGCTCATTATGCTGAAATAATACGAGCTCTACCACTTCAAGAATACATGAATCCCATGTCTGGTCTTTTAAATCTTGCTGCAAGGATCCCACAAGAAATCCCAAAACCCGATCTAGGTCCATGTGTTTATATATCATATGGCTGCACTGAGCAACTTGTACAAGCTAATGCAGTGATAAAGCTATGTTATGACTCATACGATGTGGTTAACATTTTGGCACATGCATCAGATGTCCCTATCTCTGATGAACAAGTTTCTAAAATAAGAAAGTTACTGAAAAAGCACAAGGCTCAAAATCAGAGGGAGGTTTCTAGGGTTGCTTCTGAACAATCTGTGGCAAAAAAAGTCAATGGAGAACCAGTATTATATGGTGAAACCATGAAAGAAGCAGGGCTACATAATGTGATTGGAGAGGAGATGCATTTACGCAAAAGAATTGCTAGAGAGGCTTGCTTCTCCACTCATGAAGCATGCGCAGATGCTGAAGGATCTGATTCTGATTCTGATTCTGAAGCCACATTAAGTAGCTCTGGGATGCTTCATGATGCTGAAACATCTAAAGATACAAAGTGTGAGGTTCTGCTCGACAGCTGCAATAGCTATGAAAAGCAAACCTTGGACGAGTGTTGTGGTGCCCAATGGGATGTTTTTCGCAGACAAGATGTTCCAAAACTTACAGAATATCTCAGAAGGCACTCTAATGAATTCACTCGTAAATTTGACTTTCATAAGCATGTTGTTCACCCCATCCTTGATCAGAGTTTCTTTCTAGACTCGAGTCACAAATTAAGGCTCAAGGAGGAATTTAAAATTGAGCCTTGGACTTTCGAGCAACACATTGGAGAAGCTGTTATCATCCCTGCTGGATGCCCATATCAGATTAGGAATTCCAAGTCTTGTGTACATGTGGTGCTGGACTTTGTATCACCTGAAAATGTTGCCGAGTGCATCCAGTTGACTGATGAAGTCCGTCTACTTCCAGCAGACCATAAAGCAAAAGTTGACAAGCTAGAGGTGAAGAGAATGGCCCTTTATAGTATTAGTTCAGCAATCAAAGAAATACGTGAGCTTACTTGTGCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC WRC

Protein Analysis

1029

Amino Acids

116.15

Weight (kDa)

8.44

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21430
fragaria_vesca	FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760
malus_domestica	MD05G1326700.v1.1 MD10G1304800.v1.1
prunus_persica	Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1
pyrus_communis	pycom05g30110 pycom10g25720
rosa_chinensis	RchiOBHm_Chr5g0005871
rosa_laevigata	RLG00000016376 RLG00000031332 RLG00000031334 RLG00000031337 RLG00000031345 RLG00000031346 RLG00000031385
rosa_multiflora	Rmu_sc0002694.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070030
rosa_rugosa	Rorug04G0418700 Rorug04G0418800 Rorug04G0418900
rosa_samantha	Rh5AG046200 Rh5BG044900 Rh5CG053800 Rh5DG044700
rosa_wichuraiana	Rw5G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2476
Acc36I	ACCTGC	1 cut(s)	548
AccB1I	GGYRCC	1 cut(s)	2633
AccB7I	CCANNNNNTGG	1 cut(s)	1861
AccBSI	CCGCTC	1 cut(s)	747
AccI	GTMKAC	1 cut(s)	2974
AccII	CGCG	1 cut(s)	188
AclWI	GGATC	8 cut(s)	279, 1158, 1490, 1769, 1782, 2080, 2093, 2497
AcoI	YGGCCR	2 cut(s)	52, 499
AcsI	RAATTY	8 cut(s)	256, 352, 1529, 1837, 2705, 2717, 2804, 2887
AcuI	CTGAAG	5 cut(s)	293, 1095, 1973, 2505, 2532
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	6 cut(s)	824, 1349, 1371, 1746, 2160, 2904
AfiI	CCNNNNNNNGG	6 cut(s)	54, 886, 1420, 1861, 2060, 2114
AflIII	ACRYGT	2 cut(s)	1548, 2905
AleI	CACNNNNGTG	1 cut(s)	1667
Alw21I	GWGCWC	3 cut(s)	363, 1698, 2029
Alw26I	GTCTC	4 cut(s)	480, 482, 1288, 1940
AlwI	GGATC	8 cut(s)	279, 1158, 1490, 1769, 1782, 2080, 2093, 2497
AlwNI	CAGNNNCTG	3 cut(s)	676, 1541, 2483
Ama87I	CYCGRG	1 cut(s)	2776
AoxI	GGCC	5 cut(s)	52, 121, 499, 1923, 3027
ApoI	RAATTY	8 cut(s)	256, 352, 1529, 1837, 2705, 2717, 2804, 2887
Asp700I	GAANNNNTTC	2 cut(s)	791, 1995
AspLEI	GCGC	2 cut(s)	19, 2477
AspS9I	GGNCC	7 cut(s)	25, 45, 633, 1582, 1924, 2117, 3028
AsuC2I	CCSGG	3 cut(s)	152, 605, 1415
AvaI	CYCGRG	1 cut(s)	2776
AvaII	GGWCC	5 cut(s)	25, 45, 633, 1582, 2117
BaeGI	GKGCMC	2 cut(s)	244, 2638
BamHI	GGATCC	2 cut(s)	1774, 2085
BanI	GGYRCC	1 cut(s)	2633
BanII	GRGCYC	2 cut(s)	363, 2029
BarI	GAAGNNNNNNTAC	6 cut(s)	948, 980, 2379, 2411, 2958, 2990
BbsI	GAAGAC	2 cut(s)	513, 564
Bbv12I	GWGCWC	3 cut(s)	363, 1698, 2029
BbvCI	CCTCAGC	1 cut(s)	377
BccI	CCATC	5 cut(s)	36, 364, 572, 1589, 2756
BceAI	ACGGC	3 cut(s)	67, 108, 481
BcgI	CGANNNNNNTGC	5 cut(s)	30, 498, 532, 858, 892
BclI	TGATCA	1 cut(s)	2755
BcnI	CCSGG	3 cut(s)	152, 605, 1415
BcoDI	GTCTC	4 cut(s)	480, 482, 1288, 1940
BfaI	CTAG	9 cut(s)	1037, 1374, 1493, 1818, 2114, 2313, 2442, 2771, 3011
BfmI	CTRYAG	2 cut(s)	208, 965
BfuAI	ACCTGC	1 cut(s)	548
BglII	AGATCT	2 cut(s)	1207, 1489
Bme1390I	CCNGG	3 cut(s)	152, 605, 1415
Bme18I	GGWCC	5 cut(s)	25, 45, 633, 1582, 2117
BmeT110I	CYCGRG	1 cut(s)	2776
BmgT120I	GGNCC	7 cut(s)	25, 45, 633, 1582, 1924, 2117, 3028
BmiI	GGNNCC	6 cut(s)	401, 562, 1223, 1776, 2087, 2635
BmrFI	CCNGG	3 cut(s)	152, 605, 1415
BmrI	ACTGGG	1 cut(s)	854
BmuI	ACTGGG	1 cut(s)	854
BoxI	GACNNNNGTC	1 cut(s)	2778
BpiI	GAAGAC	2 cut(s)	513, 564
BpmI	CTGGAG	2 cut(s)	152, 1732
Bpu10I	CCTNAGC	2 cut(s)	377, 1419
BpuEI	CTTGAG	2 cut(s)	1823, 2780
BpuMI	CCSGG	3 cut(s)	152, 605, 1415
BsaAI	YACGTR	2 cut(s)	245, 3065
BsaHI	GRCGYC	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	4 cut(s)	186, 536, 2616, 2819
BsaWI	WCCGGW	1 cut(s)	758
BsaXI	ACNNNNNCTCC	8 cut(s)	150, 180, 1705, 1735, 2346, 2376, 2835, 2865
Bsc4I	CCNNNNNNNGG	6 cut(s)	54, 886, 1420, 1861, 2060, 2114
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	5 cut(s)	860, 1715, 1778, 2360, 2953
Bse3DI	GCAATG	6 cut(s)	65, 559, 665, 1114, 1812, 3087
BseDI	CCNNGG	4 cut(s)	186, 536, 2616, 2819
BseGI	GGATG	8 cut(s)	375, 451, 2541, 2650, 2748, 2856, 2873, 2949
BseLI	CCNNNNNNNGG	6 cut(s)	54, 886, 1420, 1861, 2060, 2114
BseMI	GCAATG	6 cut(s)	65, 559, 665, 1114, 1812, 3087
BseMII	CTCAG	3 cut(s)	368, 2139, 2701
BseNI	ACTGG	5 cut(s)	860, 1715, 1778, 2360, 2953
BseRI	GAGGAG	5 cut(s)	23, 446, 455, 1822, 2429
BseSI	GKGCMC	2 cut(s)	244, 2638
BseX3I	CGGCCG	1 cut(s)	52
BsgI	GTGCAG	4 cut(s)	58, 1524, 1777, 2128
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	5 cut(s)	54, 123, 501, 1925, 3029
BshNI	GGYRCC	1 cut(s)	2633
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	3 cut(s)	363, 1698, 2029
BsiHKCI	CYCGRG	1 cut(s)	2776
BsiSI	CCGG	8 cut(s)	23, 43, 55, 152, 549, 605, 759, 1415
BslFI	GGGAC	2 cut(s)	134, 2219
BslI	CCNNNNNNNGG	6 cut(s)	54, 886, 1420, 1861, 2060, 2114
BsmAI	GTCTC	4 cut(s)	480, 482, 1288, 1940
BsmBI	CGTCTC	1 cut(s)	1288
BsmFI	GGGAC	2 cut(s)	134, 2219
BsnI	GGCC	5 cut(s)	54, 123, 501, 1925, 3029
Bso31I	GGTCTC	1 cut(s)	482
BsoBI	CYCGRG	1 cut(s)	2776
Bsp1286I	GDGCHC	5 cut(s)	244, 363, 1698, 2029, 2638
Bsp1407I	TGTACA	2 cut(s)	2158, 2902
BspANI	GGCC	5 cut(s)	54, 123, 501, 1925, 3029
BspCNI	CTCAG	3 cut(s)	369, 2140, 2700
BspFNI	CGCG	1 cut(s)	188
BspHI	TCATGA	2 cut(s)	2464, 2542
BspLI	GGNNCC	6 cut(s)	401, 562, 1223, 1776, 2087, 2635
BspMAI	CTGCAG	1 cut(s)	212
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	8 cut(s)	279, 1158, 1490, 1769, 1782, 2080, 2093, 2497
BspQI	GCTCTTC	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	2633
BspTNI	GGTCTC	1 cut(s)	482
BsrBI	CCGCTC	1 cut(s)	747
BsrDI	GCAATG	6 cut(s)	65, 559, 665, 1114, 1812, 3087
BsrFI	RCCGGY	1 cut(s)	54
BsrGI	TGTACA	2 cut(s)	2158, 2902
BsrI	ACTGG	5 cut(s)	860, 1715, 1778, 2360, 2953
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	4 cut(s)	186, 536, 2616, 2819
BssNI	GRCGYC	1 cut(s)	176
BssT1I	CCWWGG	2 cut(s)	2616, 2819
Bst4CI	ACNGT	5 cut(s)	131, 221, 969, 1608, 1995
Bst6I	CTCTTC	5 cut(s)	314, 335, 520, 704, 3014
BstACI	GRCGYC	1 cut(s)	176
BstAPI	GCANNNNNTGC	2 cut(s)	676, 1131
BstAUI	TGTACA	2 cut(s)	2158, 2902
BstBAI	YACGTR	2 cut(s)	245, 3065
BstC8I	GCNNGC	9 cut(s)	56, 71, 657, 661, 856, 1092, 1923, 2452, 2473
BstDEI	CTNAG	5 cut(s)	377, 1193, 1419, 2148, 2687
BstDSI	CCRYGG	1 cut(s)	186
BstEII	GGTNACC	1 cut(s)	1721
BstF5I	GGATG	8 cut(s)	375, 451, 2541, 2650, 2748, 2856, 2873, 2949
BstFNI	CGCG	1 cut(s)	188
BstHHI	GCGC	2 cut(s)	19, 2477
BstMAI	GTCTC	4 cut(s)	480, 482, 1288, 1940
BstMCI	CGRYCG	1 cut(s)	55
BstNSI	RCATGY	6 cut(s)	858, 1552, 2225, 2475, 2738, 2909
BstPAI	GACNNNNGTC	1 cut(s)	2778
BstPI	GGTNACC	1 cut(s)	1721
BstSCI	CCNGG	3 cut(s)	150, 603, 1413
BstSFI	CTRYAG	2 cut(s)	208, 965
BstSLI	GKGCMC	2 cut(s)	244, 2638
BstUI	CGCG	1 cut(s)	188
BstV2I	GAAGAC	2 cut(s)	513, 564
BstX2I	RGATCY	6 cut(s)	1150, 1207, 1489, 1774, 2085, 2489
BstYI	RGATCY	6 cut(s)	1150, 1207, 1489, 1774, 2085, 2489
BstZI	CGGCCG	1 cut(s)	52
BsuRI	GGCC	5 cut(s)	54, 123, 501, 1925, 3029
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	8 cut(s)	375, 451, 2541, 2650, 2748, 2856, 2873, 2949
BtsI	GCAGTG	2 cut(s)	1855, 2178
BtsIMutI	CAGTG	6 cut(s)	1708, 1785, 1855, 1949, 2145, 2178
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	9 cut(s)	56, 71, 657, 661, 856, 1092, 1923, 2452, 2473
CaiI	CAGNNNCTG	3 cut(s)	676, 1541, 2483
CciI	TCATGA	2 cut(s)	2464, 2542
CfoI	GCGC	2 cut(s)	19, 2477
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	7 cut(s)	25, 45, 633, 1582, 1924, 2117, 3028
Cfr42I	CCGCGG	1 cut(s)	189
CpoI	CGGWCCG	1 cut(s)	45
CseI	GACGC	3 cut(s)	184, 923, 1270
Csp6I	GTAC	6 cut(s)	823, 1348, 1370, 1745, 2159, 2903
CspCI	CAANNNNNGTGG	2 cut(s)	1554, 1589
CspI	CGGWCCG	1 cut(s)	45
CviQI	GTAC	6 cut(s)	823, 1348, 1370, 1745, 2159, 2903
DdeI	CTNAG	5 cut(s)	377, 1193, 1419, 2148, 2687
DraI	TTTAAA	2 cut(s)	2070, 2809
EaeI	YGGCCR	2 cut(s)	52, 499
EagI	CGGCCG	1 cut(s)	52
Eam1104I	CTCTTC	5 cut(s)	314, 335, 520, 704, 3014
EarI	CTCTTC	5 cut(s)	314, 335, 520, 704, 3014
EciI	GGCGGA	1 cut(s)	240
Ecl136II	GAGCTC	2 cut(s)	361, 2027
EclXI	CGGCCG	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	2616, 2819
Eco24I	GRGCYC	2 cut(s)	363, 2029
Eco31I	GGTCTC	1 cut(s)	482
Eco47I	GGWCC	5 cut(s)	25, 45, 633, 1582, 2117
Eco52I	CGGCCG	1 cut(s)	52
Eco53kI	GAGCTC	2 cut(s)	361, 2027
Eco57I	CTGAAG	5 cut(s)	293, 1095, 1973, 2505, 2532
Eco88I	CYCGRG	1 cut(s)	2776
Eco91I	GGTNACC	1 cut(s)	1721
EcoICRI	GAGCTC	2 cut(s)	361, 2027
EcoO65I	GGTNACC	1 cut(s)	1721
EcoRI	GAATTC	2 cut(s)	2705, 2887
EcoT14I	CCWWGG	2 cut(s)	2616, 2819
EcoT22I	ATGCAT	2 cut(s)	2227, 2424
EcoT38I	GRGCYC	2 cut(s)	363, 2029
ErhI	CCWWGG	2 cut(s)	2616, 2819
Esp3I	CGTCTC	1 cut(s)	1288
FalI	AAGNNNNNCTT	4 cut(s)	779, 811, 2600, 2632
FaqI	GGGAC	2 cut(s)	134, 2219
FauI	CCCGC	3 cut(s)	181, 375, 734
FauNDI	CATATG	1 cut(s)	2137
FbaI	TGATCA	1 cut(s)	2755
FblI	GTMKAC	1 cut(s)	2974
FokI	GGATG	8 cut(s)	382, 458, 2548, 2657, 2735, 2843, 2880, 2936
FriOI	GRGCYC	2 cut(s)	363, 2029
FspBI	CTAG	9 cut(s)	1037, 1374, 1493, 1818, 2114, 2313, 2442, 2771, 3011
FspI	TGCGCA	1 cut(s)	2476
GlaI	GCGC	2 cut(s)	18, 2476
GsuI	CTGGAG	2 cut(s)	152, 1732
HaeIII	GGCC	5 cut(s)	54, 123, 501, 1925, 3029
HapII	CCGG	8 cut(s)	23, 43, 55, 152, 549, 605, 759, 1415
HgaI	GACGC	3 cut(s)	184, 923, 1270
HhaI	GCGC	2 cut(s)	19, 2477
Hin1I	GRCGYC	1 cut(s)	176
Hin6I	GCGC	2 cut(s)	17, 2475
HinP1I	GCGC	2 cut(s)	17, 2475
HincII	GTYRAC	3 cut(s)	2209, 2958, 3004
HindII	GTYRAC	3 cut(s)	2209, 2958, 3004
HindIII	AAGCTT	3 cut(s)	1137, 1383, 1617
HpaI	GTTAAC	1 cut(s)	2209
HpaII	CCGG	8 cut(s)	23, 43, 55, 152, 549, 605, 759, 1415
Hpy166II	GTNNAC	8 cut(s)	1582, 1672, 2209, 2743, 2903, 2958, 2975, 3004
Hpy8I	GTNNAC	8 cut(s)	1582, 1672, 2209, 2743, 2903, 2958, 2975, 3004
Hpy99I	CGWCG	7 cut(s)	53, 293, 412, 415, 458, 461, 529
HpyAV	CCTTC	7 cut(s)	319, 415, 577, 697, 1954, 2480, 2685
HpyCH4III	ACNGT	5 cut(s)	131, 221, 969, 1608, 1995
HpyCH4IV	ACGT	4 cut(s)	244, 687, 1743, 3064
HpyF3I	CTNAG	5 cut(s)	377, 1193, 1419, 2148, 2687
HpySE526I	ACGT	4 cut(s)	244, 687, 1743, 3064
Hsp92I	GRCGYC	1 cut(s)	176
HspAI	GCGC	2 cut(s)	17, 2475
KroI	GCCGGC	1 cut(s)	54
KroNI	GCCGGC	1 cut(s)	56
Ksp22I	TGATCA	1 cut(s)	2755
KspAI	GTTAAC	1 cut(s)	2209
KspI	CCGCGG	1 cut(s)	189
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	4 cut(s)	358, 744, 1221, 1809
MaeI	CTAG	9 cut(s)	1037, 1374, 1493, 1818, 2114, 2313, 2442, 2771, 3011
MaeII	ACGT	4 cut(s)	244, 687, 1743, 3064
MaeIII	GTNAC	8 cut(s)	125, 156, 607, 1439, 1721, 1739, 2271, 2780
MbiI	CCGCTC	1 cut(s)	747
MflI	RGATCY	6 cut(s)	1150, 1207, 1489, 1774, 2085, 2489
MhlI	GDGCHC	5 cut(s)	244, 363, 1698, 2029, 2638
MlyI	GAGTC	5 cut(s)	164, 237, 2186, 2768, 2788
MmeI	TCCRAC	3 cut(s)	312, 1287, 1460
Mph1103I	ATGCAT	2 cut(s)	2227, 2424
MroNI	GCCGGC	1 cut(s)	54
MroXI	GAANNNNTTC	2 cut(s)	791, 1995
MslI	CAYNNNNRTG	4 cut(s)	368, 1667, 2700, 2733
MspA1I	CMGCKG	3 cut(s)	188, 213, 2592
MspI	CCGG	8 cut(s)	23, 43, 55, 152, 549, 605, 759, 1415
MspR9I	CCNGG	3 cut(s)	152, 605, 1415
MvnI	CGCG	1 cut(s)	188
NaeI	GCCGGC	1 cut(s)	56
NciI	CCSGG	3 cut(s)	152, 605, 1415
NdeI	CATATG	1 cut(s)	2137
NgoMIV	GCCGGC	1 cut(s)	54
NlaIV	GGNNCC	6 cut(s)	401, 562, 1223, 1776, 2087, 2635
NmeAIII	GCCGAG	2 cut(s)	561, 2968
NmuCI	GTSAC	6 cut(s)	125, 156, 1439, 1721, 1739, 2780
NsbI	TGCGCA	1 cut(s)	2476
NsiI	ATGCAT	2 cut(s)	2227, 2424
NspI	RCATGY	6 cut(s)	858, 1552, 2225, 2475, 2738, 2909
OliI	CACNNNNGTG	1 cut(s)	1667
PaeI	GCATGC	2 cut(s)	858, 2475
PaeR7I	CTCGAG	1 cut(s)	2776
PagI	TCATGA	2 cut(s)	2464, 2542
PciI	ACATGT	2 cut(s)	1548, 2905
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	533
PdiI	GCCGGC	1 cut(s)	56
PdmI	GAANNNNTTC	2 cut(s)	791, 1995
PfeI	GAWTC	6 cut(s)	106, 1887, 2050, 2495, 2501, 2507
PflMI	CCANNNNNTGG	1 cut(s)	1861
PfoI	TCCNGGA	1 cut(s)	150
PleI	GAGTC	5 cut(s)	163, 236, 2186, 2768, 2787
PpsI	GAGTC	5 cut(s)	163, 236, 2186, 2768, 2787
Ppu21I	YACGTR	2 cut(s)	245, 3065
PscI	ACATGT	2 cut(s)	1548, 2905
PshAI	GACNNNNGTC	1 cut(s)	2778
Psp124BI	GAGCTC	2 cut(s)	363, 2029
PspEI	GGTNACC	1 cut(s)	1721
PspN4I	GGNNCC	6 cut(s)	401, 562, 1223, 1776, 2087, 2635
PspPI	GGNCC	7 cut(s)	25, 45, 633, 1582, 1924, 2117, 3028
PspXI	VCTCGAGB	1 cut(s)	2776
PsrI	GAACNNNNNNTAC	2 cut(s)	877, 909
PstI	CTGCAG	1 cut(s)	212
PstNI	CAGNNNCTG	3 cut(s)	676, 1541, 2483
PsuI	RGATCY	6 cut(s)	1150, 1207, 1489, 1774, 2085, 2489
PvuII	CAGCTG	1 cut(s)	2592
RsaI	GTAC	6 cut(s)	824, 1349, 1371, 1746, 2160, 2904
RsaNI	GTAC	6 cut(s)	823, 1348, 1370, 1745, 2159, 2903
RseI	CAYNNNNRTG	4 cut(s)	368, 1667, 2700, 2733
Rsr2I	CGGWCCG	1 cut(s)	45
RsrII	CGGWCCG	1 cut(s)	45
SacI	GAGCTC	2 cut(s)	363, 2029
SacII	CCGCGG	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	335
Sau96I	GGNCC	7 cut(s)	25, 45, 633, 1582, 1924, 2117, 3028
SchI	GAGTC	5 cut(s)	164, 237, 2186, 2768, 2788
ScrFI	CCNGG	3 cut(s)	152, 605, 1415
SduI	GDGCHC	5 cut(s)	244, 363, 1698, 2029, 2638
SfcI	CTRYAG	2 cut(s)	208, 965
Sfr274I	CTCGAG	1 cut(s)	2776
Sfr303I	CCGCGG	1 cut(s)	189
SgrBI	CCGCGG	1 cut(s)	189
SinI	GGWCC	5 cut(s)	25, 45, 633, 1582, 2117
SlaI	CTCGAG	1 cut(s)	2776
SmiMI	CAYNNNNRTG	4 cut(s)	368, 1667, 2700, 2733
SmlI	CTYRAG	3 cut(s)	1802, 2776, 2795
SmoI	CTYRAG	3 cut(s)	1802, 2776, 2795
SphI	GCATGC	2 cut(s)	858, 2475
SspMI	CTAG	9 cut(s)	1037, 1374, 1493, 1818, 2114, 2313, 2442, 2771, 3011
SstI	GAGCTC	2 cut(s)	363, 2029
StyD4I	CCNGG	3 cut(s)	150, 603, 1413
StyI	CCWWGG	2 cut(s)	2616, 2819
TaaI	ACNGT	5 cut(s)	131, 221, 969, 1608, 1995
TaiI	ACGT	4 cut(s)	247, 690, 1746, 3067
TaqI	TCGA	9 cut(s)	390, 645, 733, 776, 868, 1142, 2586, 2777, 2829
TaqII	GACCGA	2 cut(s)	62, 621
TatI	WGTACW	2 cut(s)	2158, 2902
TauI	GCSGC	1 cut(s)	622
TfiI	GAWTC	6 cut(s)	106, 1887, 2050, 2495, 2501, 2507
TscAI	CASTG	6 cut(s)	1715, 1785, 1862, 1956, 2152, 2178
TseFI	GTSAC	6 cut(s)	125, 156, 1439, 1721, 1739, 2780
Tsp45I	GTSAC	6 cut(s)	125, 156, 1439, 1721, 1739, 2780
TspGWI	ACGGA	3 cut(s)	382, 1461, 2960
TspRI	CASTG	6 cut(s)	1715, 1785, 1862, 1956, 2152, 2178
Van91I	CCANNNNNTGG	1 cut(s)	1861
VpaK11BI	GGWCC	5 cut(s)	25, 45, 633, 1582, 2117
XapI	RAATTY	8 cut(s)	256, 352, 1529, 1837, 2705, 2717, 2804, 2887
XbaI	TCTAGA	2 cut(s)	1492, 2770
XceI	RCATGY	6 cut(s)	858, 1552, 2225, 2475, 2738, 2909
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1592
XhoI	CTCGAG	1 cut(s)	2776
XmiI	GTMKAC	1 cut(s)	2974
XmnI	GAANNNNTTC	2 cut(s)	791, 1995
XspI	CTAG	9 cut(s)	1037, 1374, 1493, 1818, 2114, 2313, 2442, 2771, 3011
Zsp2I	ATGCAT	2 cut(s)	2227, 2424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.