Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003373

Physical Location & Seq

Genomic Coordinates Forward (+)

3697068 .. 3703806

Gene Structure 6739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG044700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3078 bp

ATGGACCCGCTGGCCGGACCGGTGCCGGAGCATATGCGGTGCACGAGGACGGACGGCCGGCAATGGCGGTGCAAGAGGAGAGTGATGGAGAACATGAAGCTCTGCGAGATTCACTACCTGCAGGGACGGCACCGGCAGTACAGGGAGAAGGTGCCGGAGGAGCTGAAGATTCAGAGGAAGACGCAGACGGCGCCGTGCGAGGATCGCGACGGCGGCGGAGAAGGCGGAGGAATTAGGGCAAAGAAAGTGGAGGATTTGGTGACGCTGCTGAAGAGGAAGAGGGCGGCGGAGGAGGCGGCGCCGGTGAAGATAAAGAAGGCGAAGGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGAGGGGGGGAGAAGAAGTGTGAGTTGAATTTGGAGCTGATAAGGATGGTGCTGAAGAGAGAGGTGGAGAAGAGGAACACGCCGCAGAAGAAGAAGAAGAAGATGAGGGTTTTGGTGGAGGAGGAGGGGAGTGAGGGTGAGGAGGGCCTTGATCTGACCAGAGACTTGCCTAATGGAAGAATGGCCATTTCGTCTTCTTCGTCGCAGTCTTTGGGGGGCAATGTAGGTTCCAATTCGGGCTCTGATGTTAGGGTTGGGGCCGAATTAGGCCCCCCCGTGGCTACTACTACCCGGCGGTGCTTTCGGTCCAAGAACATCGAGCCAATGCCTGTTGGCACAGTGCAGGTTTTGCCATATGGTGATGAGAATGAGGGGAGATTGAGGAAGGGTAAGAGGAAGAGGTGCCATTGGTGTCAGAGAAGTGGAAGTAGTGCTTCTTCCAGCTTGATTAAGTGTTCGAGTTGTAAGAAGCACTTGTTTTGCTTGAGCTGCATCAAAGAAAGGTATTTTGATACTCAAGAAGAAGTCAAAATGGCATGTCCAGTTTGTCGAGGAACTTGCCCCTGTAAGGAATGCTCTGAAAATCAACCGAAAGATGCTGAAAGTAAGGATTATGTGGGGGTTAAAAATAAAGTTGAAATTATATTACACTTTCACTACCTCGTCTGTATGCTTCTCCCTGTGCTGAAACAAATCAACCAAGATCAGAAATTTGAGCTGGAAGCAGAGGCAAAAATGAGAGGGAAAAAGCTCTCCGAAGTTTATATCAAGCAGGCTGAATTTAGCTGCAGTGAGCAAAACAGCTGCAATAAATGCAAAGCTCCCATTGTGGATCTTCACAGAAGCTGCCAAAATTGTTCCTATAACCTTTGTTTGAGCTGTTGTCGAGATCATTTTCAGGGGACTTTACGGGGAGGTATAAATACATTTCTCTCAAAGTGCTCTAATATAAATGATACTTGGGTCTCTGGTAAGGGGAAAGTTCAGAAAAGGCCAATAACTACCCATAAGCAAAATGTCCGGTACCTGTCGTCATTTGCATCAACTAACTGGAATGCTTGTAATGCTGTTGACGGTATATCTTGCCCGCCCAAGGAGTTTGGTGGTTGTGGTGACAGCTTCCTTGATTTGAGATGTTTTTTCCCTTTAAGTTGGATCAAAGAGCTAGAAGTAAGTGCAGAAGAAATAGTTTGCAGCTATGAGTTTCCAGAAACTTCAGACATGTCATTGAGCTGCCCTCTATGTTTGGACACGGACCAGAATGTCGATGGACTTCAACAGTTGCAAGAAGCTGCTTTGAGAGAAAATTCAAATGATAACTATCTATTCTACCCCACGCTTTCAGACGTACATGGTGATAATGTTGAACATTTTCAGAAGCACTGGAGTAAAGGTCATCCTGTTATAGTCCGAGATGTCCTTCGGAGTACGTCAGATTTGAGTTGGGATCCAGTATTCATGTTCTGCACTTATCTTGAGAGGAGCATTGCTAGATATGAAAATAACAAGAATCCACAGGAAGCTATCCACTGCTTGGATTGGTGTGAGGTGGAAATGGGGATCAGGCAGTATTTTATGGGTTCATTGAACGGGCGAACACAAAAAGACATGTGGAGTGAGACCCTGAAATTGAAGGGTTGGCTTTCTTCACAATTATTTCAAGAACAGTTTCCAGCTCATTATGCTGAAATCATCCAAGCTCTACCACTTCAAGAGTACATGAATCCCTCGTCTGGTCTTTTAAATGTTGCTGCAAGGATGCCACAGGAAATCCCAAAACCTGATCTAGGTCCATGTGTTTATATTTCGTATGGGTGCAGTGAGCAGTTTGTACAGGCTGATTCAGTGATAAAGTTGTGTTATGACTCATATGATGTGGTTAACATTTTGGCACATACATCAGATGCCCCTATTTCTGATGAACAAGTTTCTAAGATAAGAAAGTTACTGAAAAGGCACAATCAAAATCAGAGGGAGTCTTCTAGGAATACTTCTGAACAAACTAGAGCAAAAAAAGTGAATGGAAATTCAGCATTGCATAGTCAAAACAAGGAACAAGTGAGGTCACATAATGTGATTGGAGAAGAGATGCATTTACGGAAAAGAATTGCAAGAGAATCTTGCTTCTCTGCTGCAACGCGTGAAGAATGCACTAGGAATCTCAAAGAGAGTAATATGTCACTTGATGGGGAATCTGATGTTGATTCTGAGGCCACGTTGAGTTGCTCTGGGTCTATCAATGGTGATGAAACATCTGAAGATGAGGAGTCACCGGATCTCCTTGAAAGCTCAAATGGCCATGAAAAACCCTTTGTAGAGTCATGCACTGCACAGTGGGATGTTTTCCGCCGGCAAGATGTTCCGAAACTTGTAGAATATCTCAGAAGGCACTGTAATGAATTTACTCGTAAATATGACGTTCATAAACATGTTGCTCATCCAATTCTTGATCAGAGTTTCTTTCTAGACTCGATTCACAAAATAAGACTCAAGGAGGAATTTAAAATTGAACCTTGGACTTTTGAGCAACACATTGGAGAAGCTGTCATCATCCCTGCTGGATGCCCGTACCAAATTAGTAGTCCTAAGTCTTGTGTACATGTGGTGCTCGATTTTATGTCTCCCGAAAATGTTACTGAGTGCATCCAGTTGACAGATGAAGTTCGCCTGCTTCCAGAAGATCATAAAGCAAAAGTGGACAAGCTGGAGGTGAACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC WRC

Protein Analysis

1025

Amino Acids

116.72

Weight (kDa)

8.25

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRC	PF08879	9 - 50	2.7e-16	WRC
JmjC	PF02373	893 - 991	3.7e-11	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21430
fragaria_vesca	FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760
malus_domestica	MD05G1326700.v1.1 MD10G1304800.v1.1
prunus_persica	Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1
pyrus_communis	pycom05g30110 pycom10g25720
rosa_chinensis	RchiOBHm_Chr5g0005871
rosa_laevigata	RLG00000016376 RLG00000031332 RLG00000031334 RLG00000031337 RLG00000031345 RLG00000031346 RLG00000031385
rosa_multiflora	Rmu_sc0002694.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070030
rosa_rugosa	Rorug04G0418700 Rorug04G0418800 Rorug04G0418900
rosa_samantha	Rh5AG046200 Rh5BG044900 Rh5CG053800 Rh5DG044700
rosa_wichuraiana	Rw5G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1619
Acc36I	ACCTGC	2 cut(s)	126, 691
Acc65I	GGTACC	1 cut(s)	1380
AccB1I	GGYRCC	7 cut(s)	22, 129, 151, 190, 298, 759, 1380
AccB7I	CCANNNNNTGG	1 cut(s)	1891
AccII	CGCG	2 cut(s)	207, 2497
AclI	AACGTT	1 cut(s)	3072
AclWI	GGATC	7 cut(s)	210, 1197, 1520, 1799, 1812, 1925, 2640
AcoI	YGGCCR	4 cut(s)	12, 55, 540, 2653
AcsI	RAATTY	7 cut(s)	385, 1067, 1136, 1663, 2383, 2756, 2855
AcuI	CTGAAG	5 cut(s)	185, 290, 431, 1557, 2634
AcyI	GRCGYC	2 cut(s)	191, 299
AfaI	GTAC	8 cut(s)	140, 1382, 1707, 1786, 2075, 2190, 2927, 2955
AfiI	CCNNNNNNNGG	7 cut(s)	14, 634, 925, 1450, 1891, 2090, 2144
AflIII	ACRYGT	5 cut(s)	1578, 1965, 2495, 2785, 2956
AgeI	ACCGGT	1 cut(s)	19
Alw21I	GWGCWC	3 cut(s)	44, 1301, 2967
Alw26I	GTCTC	4 cut(s)	513, 1327, 1970, 2982
Alw44I	GTGCAC	1 cut(s)	40
AlwI	GGATC	7 cut(s)	210, 1197, 1520, 1799, 1812, 1925, 2640
AlwNI	CAGNNNCTG	1 cut(s)	1203
AoxI	GGCC	9 cut(s)	12, 55, 502, 540, 615, 625, 1349, 2568, 2653
ApaLI	GTGCAC	1 cut(s)	40
ApoI	RAATTY	7 cut(s)	385, 1067, 1136, 1663, 2383, 2756, 2855
ArsI	GACNNNNNNTTYG	2 cut(s)	2923, 2955
AsiGI	ACCGGT	1 cut(s)	19
Asp700I	GAANNNNTTC	2 cut(s)	1728, 2025
Asp718I	GGTACC	1 cut(s)	1380
AspLEI	GCGC	2 cut(s)	193, 301
AspS9I	GGNCC	8 cut(s)	4, 17, 502, 615, 626, 663, 1612, 2147
AsuC2I	CCSGG	1 cut(s)	649
AsuHPI	GGTGA	9 cut(s)	271, 316, 337, 506, 728, 1481, 1724, 2612, 2619
AvaII	GGWCC	5 cut(s)	4, 17, 663, 1612, 2147
BaeGI	GKGCMC	1 cut(s)	44
BaeI	ACNNNNGTAYC	2 cut(s)	1305, 1338
BalI	TGGCCA	2 cut(s)	542, 2655
BamHI	GGATCC	1 cut(s)	1804
BanI	GGYRCC	7 cut(s)	22, 129, 151, 190, 298, 759, 1380
BanII	GRGCYC	1 cut(s)	599
BarI	GAAGNNNNNNTAC	2 cut(s)	778, 810
BauI	CACGAG	1 cut(s)	43
BbsI	GAAGAC	3 cut(s)	185, 543, 2328
Bbv12I	GWGCWC	3 cut(s)	44, 1301, 2967
BccI	CCATC	4 cut(s)	79, 397, 1619, 2537
BceAI	ACGGC	5 cut(s)	70, 143, 178, 204, 226
BcgI	CGANNNNNNTGC	2 cut(s)	897, 931
BclI	TGATCA	1 cut(s)	2806
BcnI	CCSGG	1 cut(s)	649
BcoDI	GTCTC	4 cut(s)	513, 1327, 1970, 2982
BfaI	CTAG	7 cut(s)	1523, 1848, 2144, 2340, 2361, 2511, 2822
BfmI	CTRYAG	2 cut(s)	119, 1144
BfoI	RGCGCY	2 cut(s)	194, 302
BfuAI	ACCTGC	2 cut(s)	126, 691
Bme1390I	CCNGG	1 cut(s)	649
Bme18I	GGWCC	5 cut(s)	4, 17, 663, 1612, 2147
BmgT120I	GGNCC	8 cut(s)	4, 17, 502, 615, 626, 663, 1612, 2147
BmrFI	CCNGG	1 cut(s)	649
BmsI	GCATC	8 cut(s)	858, 943, 1406, 2106, 2251, 2436, 2909, 3009
BpiI	GAAGAC	3 cut(s)	185, 543, 2328
BplI	GAGNNNNNCTC	2 cut(s)	1579, 1611
BpmI	CTGGAG	1 cut(s)	1762
BpuEI	CTTGAG	4 cut(s)	858, 862, 1853, 2831
BpuMI	CCSGG	1 cut(s)	649
BsaBI	GATNNNNATC	1 cut(s)	1677
BsaHI	GRCGYC	2 cut(s)	191, 299
BsaI	GGTCTC	2 cut(s)	1327, 1970
BsaJI	CCNNGG	3 cut(s)	633, 1449, 2870
BsaWI	WCCGGW	3 cut(s)	19, 1377, 2629
Bsc4I	CCNNNNNNNGG	7 cut(s)	14, 634, 925, 1450, 1891, 2090, 2144
Bse118I	RCCGGY	5 cut(s)	19, 57, 132, 301, 2706
Bse1I	ACTGG	5 cut(s)	899, 1412, 1745, 1808, 3004
Bse3DI	GCAATG	4 cut(s)	68, 583, 1842, 2390
Bse8I	GATNNNNATC	1 cut(s)	1677
BseDI	CCNNGG	3 cut(s)	633, 1449, 2870
BseGI	GGATG	9 cut(s)	408, 1753, 2049, 2121, 2701, 2794, 2907, 2924, 3000
BseJI	GATNNNNATC	1 cut(s)	1677
BseLI	CCNNNNNNNGG	7 cut(s)	14, 634, 925, 1450, 1891, 2090, 2144
BseMI	GCAATG	4 cut(s)	68, 583, 1842, 2390
BseMII	CTCAG	3 cut(s)	2556, 2752, 2985
BseNI	ACTGG	5 cut(s)	899, 1412, 1745, 1808, 3004
BseRI	GAGGAG	9 cut(s)	91, 173, 305, 370, 491, 494, 512, 1852, 2636
BseSI	GKGCMC	1 cut(s)	44
BseX3I	CGGCCG	1 cut(s)	55
BsgI	GTGCAG	5 cut(s)	719, 1554, 1807, 2194, 2670
Bsh1236I	CGCG	2 cut(s)	207, 2497
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	9 cut(s)	14, 57, 504, 542, 617, 627, 1351, 2570, 2655
BshNI	GGYRCC	7 cut(s)	22, 129, 151, 190, 298, 759, 1380
BshTI	ACCGGT	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	3 cut(s)	44, 1301, 2967
BslFI	GGGAC	2 cut(s)	138, 1273
BslI	CCNNNNNNNGG	7 cut(s)	14, 634, 925, 1450, 1891, 2090, 2144
BsmAI	GTCTC	4 cut(s)	513, 1327, 1970, 2982
BsmFI	GGGAC	2 cut(s)	138, 1273
BsmI	GAATGC	3 cut(s)	935, 1417, 2510
BsnI	GGCC	9 cut(s)	14, 57, 504, 542, 617, 627, 1351, 2570, 2655
Bso31I	GGTCTC	2 cut(s)	1327, 1970
Bsp1286I	GDGCHC	4 cut(s)	44, 599, 1301, 2967
Bsp1407I	TGTACA	2 cut(s)	2188, 2953
Bsp68I	TCGCGA	1 cut(s)	207
BspANI	GGCC	9 cut(s)	14, 57, 504, 542, 617, 627, 1351, 2570, 2655
BspCNI	CTCAG	3 cut(s)	2557, 2751, 2986
BspFNI	CGCG	2 cut(s)	207, 2497
BspMAI	CTGCAG	2 cut(s)	123, 1148
BspMI	ACCTGC	2 cut(s)	126, 691
BspPI	GGATC	7 cut(s)	210, 1197, 1520, 1799, 1812, 1925, 2640
BspT107I	GGYRCC	7 cut(s)	22, 129, 151, 190, 298, 759, 1380
BspTNI	GGTCTC	2 cut(s)	1327, 1970
BsrDI	GCAATG	4 cut(s)	68, 583, 1842, 2390
BsrFI	RCCGGY	5 cut(s)	19, 57, 132, 301, 2706
BsrGI	TGTACA	2 cut(s)	2188, 2953
BsrI	ACTGG	5 cut(s)	899, 1412, 1745, 1808, 3004
BssAI	RCCGGY	5 cut(s)	19, 57, 132, 301, 2706
BssECI	CCNNGG	3 cut(s)	633, 1449, 2870
BssNI	GRCGYC	2 cut(s)	191, 299
BssSI	CACGAG	1 cut(s)	43
BssT1I	CCWWGG	2 cut(s)	1449, 2870
Bst2BI	CACGAG	1 cut(s)	43
Bst4CI	ACNGT	6 cut(s)	697, 1433, 1638, 2025, 2691, 2750
Bst6I	CTCTTC	7 cut(s)	266, 272, 347, 407, 422, 749, 2436
BstACI	GRCGYC	2 cut(s)	191, 299
BstAPI	GCANNNNNTGC	2 cut(s)	706, 1170
BstAUI	TGTACA	2 cut(s)	2188, 2953
BstC8I	GCNNGC	6 cut(s)	12, 59, 1131, 1445, 2708, 3026
BstDEI	CTNAG	5 cut(s)	2289, 2565, 2738, 2943, 2994
BstDSI	CCRYGG	1 cut(s)	633
BstENI	CCTNNNNNAGG	1 cut(s)	2142
BstF5I	GGATG	9 cut(s)	408, 1753, 2049, 2121, 2701, 2794, 2907, 2924, 3000
BstFNI	CGCG	2 cut(s)	207, 2497
BstH2I	RGCGCY	2 cut(s)	194, 302
BstHHI	GCGC	2 cut(s)	193, 301
BstMAI	GTCTC	4 cut(s)	513, 1327, 1970, 2982
BstMCI	CGRYCG	1 cut(s)	58
BstNSI	RCATGY	5 cut(s)	897, 1582, 1969, 2789, 2960
BstSCI	CCNGG	1 cut(s)	647
BstSFI	CTRYAG	2 cut(s)	119, 1144
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	2 cut(s)	207, 2497
BstV2I	GAAGAC	3 cut(s)	185, 543, 2328
BstX2I	RGATCY	3 cut(s)	1189, 1804, 2632
BstYI	RGATCY	3 cut(s)	1189, 1804, 2632
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	9 cut(s)	14, 57, 504, 542, 617, 627, 1351, 2570, 2655
BtgI	CCRYGG	1 cut(s)	633
BtsCI	GGATG	9 cut(s)	408, 1753, 2049, 2121, 2701, 2794, 2907, 2924, 3000
BtsI	GCAGTG	4 cut(s)	1153, 1885, 2182, 2682
BtsIMutI	CAGTG	9 cut(s)	702, 1153, 1738, 1885, 2182, 2208, 2682, 2696, 2746
BtuMI	TCGCGA	1 cut(s)	207
BveI	ACCTGC	2 cut(s)	126, 691
Cac8I	GCNNGC	6 cut(s)	12, 59, 1131, 1445, 2708, 3026
CaiI	CAGNNNCTG	1 cut(s)	1203
CfoI	GCGC	2 cut(s)	193, 301
Cfr10I	RCCGGY	5 cut(s)	19, 57, 132, 301, 2706
Cfr13I	GGNCC	8 cut(s)	4, 17, 502, 615, 626, 663, 1612, 2147
CpoI	CGGWCCG	1 cut(s)	17
CseI	GACGC	2 cut(s)	190, 271
Csp6I	GTAC	8 cut(s)	139, 1381, 1706, 1785, 2074, 2189, 2926, 2954
CspAI	ACCGGT	1 cut(s)	19
CspCI	CAANNNNNGTGG	2 cut(s)	228, 263
CspI	CGGWCCG	1 cut(s)	17
CviQI	GTAC	8 cut(s)	139, 1381, 1706, 1785, 2074, 2189, 2926, 2954
DdeI	CTNAG	5 cut(s)	2289, 2565, 2738, 2943, 2994
DinI	GGCGCC	2 cut(s)	192, 300
DraI	TTTAAA	2 cut(s)	2100, 2860
DrdI	GACNNNNNNGTC	1 cut(s)	1619
DseDI	GACNNNNNNGTC	1 cut(s)	1619
EaeI	YGGCCR	4 cut(s)	12, 55, 540, 2653
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	7 cut(s)	266, 272, 347, 407, 422, 749, 2436
EarI	CTCTTC	7 cut(s)	266, 272, 347, 407, 422, 749, 2436
EciI	GGCGGA	4 cut(s)	231, 240, 302, 2693
EclXI	CGGCCG	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	1449, 2870
Eco24I	GRGCYC	1 cut(s)	599
Eco31I	GGTCTC	2 cut(s)	1327, 1970
Eco47I	GGWCC	5 cut(s)	4, 17, 663, 1612, 2147
Eco52I	CGGCCG	1 cut(s)	55
Eco57I	CTGAAG	5 cut(s)	185, 290, 431, 1557, 2634
EcoNI	CCTNNNNNAGG	1 cut(s)	2142
EcoO109I	RGGNCCY	2 cut(s)	502, 626
EcoT14I	CCWWGG	2 cut(s)	1449, 2870
EcoT22I	ATGCAT	1 cut(s)	2451
EcoT38I	GRGCYC	1 cut(s)	599
EgeI	GGCGCC	2 cut(s)	192, 300
EheI	GGCGCC	2 cut(s)	192, 300
ErhI	CCWWGG	2 cut(s)	1449, 2870
FalI	AAGNNNNNCTT	6 cut(s)	775, 807, 815, 847, 2461, 2493
FaqI	GGGAC	2 cut(s)	138, 1273
FauI	CCCGC	2 cut(s)	15, 1452
FauNDI	CATATG	3 cut(s)	33, 712, 2227
FbaI	TGATCA	1 cut(s)	2806
FokI	GGATG	9 cut(s)	415, 1740, 2036, 2128, 2708, 2781, 2894, 2931, 2987
FriOI	GRGCYC	1 cut(s)	599
FspBI	CTAG	7 cut(s)	1523, 1848, 2144, 2340, 2361, 2511, 2822
GlaI	GCGC	2 cut(s)	192, 300
GsuI	CTGGAG	1 cut(s)	1762
HaeII	RGCGCY	2 cut(s)	194, 302
HaeIII	GGCC	9 cut(s)	14, 57, 504, 542, 617, 627, 1351, 2570, 2655
HgaI	GACGC	2 cut(s)	190, 271
HhaI	GCGC	2 cut(s)	193, 301
Hin1I	GRCGYC	2 cut(s)	191, 299
Hin6I	GCGC	2 cut(s)	191, 299
HinP1I	GCGC	2 cut(s)	191, 299
HincII	GTYRAC	3 cut(s)	1429, 2239, 3009
HindII	GTYRAC	3 cut(s)	1429, 2239, 3009
HpaI	GTTAAC	1 cut(s)	2239
HphI	GGTGA	9 cut(s)	271, 316, 337, 506, 728, 1481, 1724, 2612, 2619
Hpy166II	GTNNAC	7 cut(s)	42, 1429, 2239, 2954, 3009, 3055, 3070
Hpy8I	GTNNAC	7 cut(s)	42, 1429, 2239, 2954, 3009, 3055, 3070
Hpy99I	CGWCG	2 cut(s)	212, 562
HpyAV	CCTTC	8 cut(s)	142, 215, 310, 316, 736, 1787, 1984, 2736
HpyCH4III	ACNGT	6 cut(s)	697, 1433, 1638, 2025, 2691, 2750
HpyCH4IV	ACGT	5 cut(s)	1704, 1787, 2573, 2775, 3072
HpyF3I	CTNAG	5 cut(s)	2289, 2565, 2738, 2943, 2994
HpySE526I	ACGT	5 cut(s)	1704, 1787, 2573, 2775, 3072
Hsp92I	GRCGYC	2 cut(s)	191, 299
HspAI	GCGC	2 cut(s)	191, 299
KasI	GGCGCC	2 cut(s)	190, 298
KpnI	GGTACC	1 cut(s)	1384
KroI	GCCGGC	2 cut(s)	57, 2706
KroNI	GCCGGC	2 cut(s)	59, 2708
Ksp22I	TGATCA	1 cut(s)	2806
KspAI	GTTAAC	1 cut(s)	2239
LmnI	GCTCC	5 cut(s)	28, 160, 391, 1183, 1839
LweI	GCATC	8 cut(s)	858, 943, 1406, 2106, 2251, 2436, 2909, 3009
MaeI	CTAG	7 cut(s)	1523, 1848, 2144, 2340, 2361, 2511, 2822
MaeII	ACGT	5 cut(s)	1704, 1787, 2573, 2775, 3072
MaeIII	GTNAC	7 cut(s)	259, 1469, 2301, 2421, 2535, 2625, 2989
MflI	RGATCY	3 cut(s)	1189, 1804, 2632
MhlI	GDGCHC	4 cut(s)	44, 599, 1301, 2967
MlsI	TGGCCA	2 cut(s)	542, 2655
MluI	ACGCGT	1 cut(s)	2495
MluNI	TGGCCA	2 cut(s)	542, 2655
Mly113I	GGCGCC	2 cut(s)	191, 299
MlyI	GAGTC	6 cut(s)	2216, 2342, 2633, 2684, 2819, 2838
MmeI	TCCRAC	1 cut(s)	1490
Mox20I	TGGCCA	2 cut(s)	542, 2655
Mph1103I	ATGCAT	1 cut(s)	2451
MroNI	GCCGGC	2 cut(s)	57, 2706
MroXI	GAANNNNTTC	2 cut(s)	1728, 2025
MscI	TGGCCA	2 cut(s)	542, 2655
MseI	TTAA	7 cut(s)	807, 981, 1505, 2099, 2238, 2859, 3076
MslI	CAYNNNNRTG	2 cut(s)	2751, 2784
Msp20I	TGGCCA	2 cut(s)	542, 2655
MspA1I	CMGCKG	2 cut(s)	10, 1161
MspR9I	CCNGG	1 cut(s)	649
Mva1269I	GAATGC	3 cut(s)	935, 1417, 2510
MvnI	CGCG	2 cut(s)	207, 2497
NaeI	GCCGGC	2 cut(s)	59, 2708
NarI	GGCGCC	2 cut(s)	191, 299
NciI	CCSGG	1 cut(s)	649
NdeI	CATATG	3 cut(s)	33, 712, 2227
NgoMIV	GCCGGC	2 cut(s)	57, 2706
NmuCI	GTSAC	5 cut(s)	259, 1469, 2421, 2535, 2625
NruI	TCGCGA	1 cut(s)	207
NsiI	ATGCAT	1 cut(s)	2451
NspI	RCATGY	5 cut(s)	897, 1582, 1969, 2789, 2960
PciI	ACATGT	4 cut(s)	1578, 1965, 2785, 2956
PcsI	WCGNNNNNNNCGW	1 cut(s)	554
PctI	GAATGC	3 cut(s)	935, 1417, 2510
PdiI	GCCGGC	2 cut(s)	59, 2708
PdmI	GAANNNNTTC	2 cut(s)	1728, 2025
PflMI	CCANNNNNTGG	1 cut(s)	1891
PinAI	ACCGGT	1 cut(s)	19
PleI	GAGTC	6 cut(s)	2216, 2341, 2632, 2683, 2819, 2838
PluTI	GGCGCC	2 cut(s)	194, 302
PpsI	GAGTC	6 cut(s)	2216, 2341, 2632, 2683, 2819, 2838
PscI	ACATGT	4 cut(s)	1578, 1965, 2785, 2956
Psp1406I	AACGTT	1 cut(s)	3072
PspPI	GGNCC	8 cut(s)	4, 17, 502, 615, 626, 663, 1612, 2147
PstI	CTGCAG	2 cut(s)	123, 1148
PstNI	CAGNNNCTG	1 cut(s)	1203
PsuI	RGATCY	3 cut(s)	1189, 1804, 2632
PvuII	CAGCTG	1 cut(s)	1161
RruI	TCGCGA	1 cut(s)	207
RsaI	GTAC	8 cut(s)	140, 1382, 1707, 1786, 2075, 2190, 2927, 2955
RsaNI	GTAC	8 cut(s)	139, 1381, 1706, 1785, 2074, 2189, 2926, 2954
RseI	CAYNNNNRTG	2 cut(s)	2751, 2784
Rsr2I	CGGWCCG	1 cut(s)	17
RsrII	CGGWCCG	1 cut(s)	17
SaqAI	TTAA	7 cut(s)	807, 981, 1505, 2099, 2238, 2859, 3076
Sau96I	GGNCC	8 cut(s)	4, 17, 502, 615, 626, 663, 1612, 2147
SbfI	CCTGCAGG	1 cut(s)	123
SchI	GAGTC	6 cut(s)	2216, 2342, 2633, 2684, 2819, 2838
ScrFI	CCNGG	1 cut(s)	649
SdaI	CCTGCAGG	1 cut(s)	123
SduI	GDGCHC	4 cut(s)	44, 599, 1301, 2967
SfaNI	GCATC	8 cut(s)	858, 943, 1406, 2106, 2251, 2436, 2909, 3009
SfcI	CTRYAG	2 cut(s)	119, 1144
SfoI	GGCGCC	2 cut(s)	192, 300
SgrAI	CRCCGGYG	1 cut(s)	301
SinI	GGWCC	5 cut(s)	4, 17, 663, 1612, 2147
SmiMI	CAYNNNNRTG	2 cut(s)	2751, 2784
SmlI	CTYRAG	4 cut(s)	841, 873, 1832, 2846
SmoI	CTYRAG	4 cut(s)	841, 873, 1832, 2846
Sse8387I	CCTGCAGG	1 cut(s)	123
SspDI	GGCGCC	2 cut(s)	190, 298
SspMI	CTAG	7 cut(s)	1523, 1848, 2144, 2340, 2361, 2511, 2822
StyD4I	CCNGG	1 cut(s)	647
StyI	CCWWGG	2 cut(s)	1449, 2870
TaaI	ACNGT	6 cut(s)	697, 1433, 1638, 2025, 2691, 2750
TaiI	ACGT	5 cut(s)	1707, 1790, 2576, 2778, 3075
TaqI	TCGA	7 cut(s)	675, 815, 907, 1243, 1623, 2828, 2967
TaqII	GACCGA	1 cut(s)	651
TatI	WGTACW	4 cut(s)	138, 2073, 2188, 2953
TauI	GCSGC	4 cut(s)	216, 287, 299, 442
Tru1I	TTAA	7 cut(s)	807, 981, 1505, 2099, 2238, 2859, 3076
Tru9I	TTAA	7 cut(s)	807, 981, 1505, 2099, 2238, 2859, 3076
TscAI	CASTG	9 cut(s)	702, 1153, 1745, 1892, 2182, 2208, 2689, 2696, 2753
TseFI	GTSAC	5 cut(s)	259, 1469, 2421, 2535, 2625
Tsp45I	GTSAC	5 cut(s)	259, 1469, 2421, 2535, 2625
TspGWI	ACGGA	3 cut(s)	65, 1625, 2470
TspRI	CASTG	9 cut(s)	702, 1153, 1745, 1892, 2182, 2208, 2689, 2696, 2753
Van91I	CCANNNNNTGG	1 cut(s)	1891
VneI	GTGCAC	1 cut(s)	40
VpaK11BI	GGWCC	5 cut(s)	4, 17, 663, 1612, 2147
XagI	CCTNNNNNAGG	1 cut(s)	2142
XapI	RAATTY	7 cut(s)	385, 1067, 1136, 1663, 2383, 2756, 2855
XbaI	TCTAGA	1 cut(s)	2821
XceI	RCATGY	5 cut(s)	897, 1582, 1969, 2789, 2960
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1622
XmnI	GAANNNNTTC	2 cut(s)	1728, 2025
XspI	CTAG	7 cut(s)	1523, 1848, 2144, 2340, 2361, 2511, 2822
Zsp2I	ATGCAT	1 cut(s)	2451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.