Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003373

Physical Location & Seq

Genomic Coordinates Forward (+)

4178707 .. 4193223

Gene Structure 14517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031334

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3123 bp

ATGAAGGTCATAGTGGTTAGCTCACCAGGCGGACCGGAGCTCCTCCAAGTACAGGAAGTGGAAGACCCCAAAAATAAAAGACGACGAGTTTCTAGTCAAAGTCGAGGCCACGTCACTGAACCAGGCAGACAGCTTACAGCAGGTCAACGGCTAGGGTTCTACCCACGGTACCCACCACCTCTGGGGCCCAGCGAGTTGCTGGAACTGGAATGTTCTGGAACCATCGAGGCCGTCGGGGAACACGTGTCACGCTGGAAAGCCGGCGATCAGATATGGGATCGAGAGATTTTAATTCAACCTCTGCATGATTATTACATGGACATGGAACACCTCCTAGCCTGCAAGACATACAGGGAAACATCACAGATAGCTGAGTATACCAAAACCCTAGGGTCTTTGGTAGCAAGGCGGCGGCATCTGGTTCGCTCCTTGCCTGTCAGGGGACGTTTTCCTGCGCCGTTCGTATCTGGTGTGAGACGCCAGATTGTGCAGCAGAGGGGAGTAATCTCATATTTGGGATCGGGGACGAAAGGCATATATGGCCGAGCAATGGGTGTCGGGCTTCTTCCGGCTGTGAGACTACGTTCCAGGTCAGACCCAGGTCCCTCGAGGAGGCGAGAATGGTTGAAGATCGCGGTCGTCCGCCTGAATGACAGTGGCAGCTTGTTTGCTTGGTGTGGTAGCAGTGCCTCCGGCAAGCTTCCTGGGGTTCCGATGATCGATGGTCTAGGCATCCAACGGCCGAAAGCCAAAGAGACCAACCCTGCCGACTCAGCCATCCATGATGATAGTCCATGTACATATCATGAGGAGGCATCTCTTAGCTCCAGACGCGTTGTCTGGGTTTTCCTTTTCTTCTGCTGTCTTCGATTGTTTCCAGCCGTAAACAATACCACCACAGCCCTCCATGGATTGAAGGTTTCTGCGCTCTCCCTCCCAATTGAAGGTGCTGCCGAGGTAATGACTTTTGAGTCCTTGGATGCGTCTTGTGATGTCAAAGCACGTGATGGTTTCCAAACATTATTTAAAGATGCACTTATAAACGCCATTGAGCAGGAATATGGGCTGCCTGCCGGCTGGCTTTTATTCCAGGATGACTCGATTTGGCTCTATCTCTGCTGGTGTCAAGACCTTTGTGGCGATTGGCAGCTTGGTGCCGCTCGTCGGCTGCGTGGTCCCATTGTCGGTGTTGGCTCGGCAGGAGGAAGCGCCCAACCGCGACCTACGTTGGCTTACTTTCCATTTCCATCGACAAATAGGTCAGTACTCTACTACGTATACATCTGTGCTTTGAATTTTGAATTTTTGAATACTTCCTCTGACATAAATTATCTTCTATCGATTCCATTTGACTGCTTGGTACTTTGTGATAAGGCTAAAAGCAATCTCAAGTTTGAGGTATGCAATCCAATTACGAAATCATTGTCTTTCATAACTGACCATAAGCAAAATGTCCGGTATCTGTCGTCATTTGCATCAGTAACTAACGGGAAAGATTGTAATGCTGCTGATGGCATATCTTGCCCGCCCAAGGAGTTTGGTGGTTGTGGTGACAGCTTCCTTGATTTGAGATGCTTTTTCCCTTTAAGTTGGATCAAAGAGCTAGAAGTAAGTGCTGAAGAAATAGTTTGCAGCTGTGAGTTTCCAGAAACTTCAGACATGTCATTGAGCTGCCCTCTATCTGCTTTGAGAGAAAATTCAAATGATAACTATCTATTCTACCCCACGCTTTTAGACATACATGGTGATAATGTTGAACATTTTCAGAAGCACTGGAGTAAAGGTCATCCTGTTATAGTCCGAGATGTCCTTCGGACTACGTCAGATTTGAGTTGGGATCCGGTATTCATGTTCTGCACTTATCTTGAGAGGAGCATTGCTAGATATGAAAATAACAAAAATCCACAGGAAGCTATCCGCTGCTTGGATTGGTGTGAGGTGGAAATGGGGATCAGGCAGTATTTTATGGATTCATTGAACGGGCGAACACAAAAAGATATGTGGAGTGAGACCCTGAAATTGAAGGGTCGGCTTTCTTCACAATTATTTCAAGAACAGTTTCCAGCTCATTATACTGAAATCATCCAAGCTCTACCACTTCAAGAGTACATGAATCCCACGTCTGGTCTTTTAAATGTTGCTGCAAGGATGCCACAGGAAATCCCAAAACCCGATCTAGGTCCATGTGTTTATATTTCCTATGGCTGCAGTGAACAGTTTGTACAGGCTGATTCAGTGATAAAGTTGTGTTATGATTCGTATGATGTGGCTAACATTTTGGCACATACATCAGATGCCCCTATTTCTGATGAACAAGTTTCTAAGATAAGAAAGTTACTGAAAAGGCACAATCAAAATCAGAGGGAGTCTTCTAGGAATACTTCTGAACAAACTAGAGGAAAAAAAGTAATGGAAATTCAGCATTGCATAGTCAAAACAAGGAACAAAATTGCTAGAGAATCTTGCTTCTCTGCTGCAACGCTTGAAGAATGCACTAGGAATCTCGAAGAGAGTAATATGTCACTTGATGGGGAATCTGATGTTGATTCTGAGGCCACGTTGAGTTGCTCTGGGTCTATCAATGGTGATGAAACATCTGAAGATGAGGAGTCACCGGATCTCCTTGAAAGCTCAAATGGCCATGAAAAACCATTTGTAGAGTCATGCACTGCACAGTGGGATGTTTCCTGCCGGCAAGATGTTCCGAAACTTGTAGAATATCTCAGAAGGCACTGTAATGAGTTTACTCGTAAATATGATGTTCATAAACATGTTGCTCATCCAATTCTTGATCAGAGTTTCTTTCTAGACTCGATTCACAAAATAAGACTCAAGGAGGAATTTAAAATTGAACCTTGGACTTTTGAGCAACACATTGGAGAAGCTGACATCATCCCTGCTGGATGCCCGTACCAGATTAGTAGTCCTAAGTCTTGTGTACATGTGGTGCTCGATTTTATGTCTCCCGAAAATGTTACCGAGTGCATCCAGTTGACAGATGAAGTTCGCCTACTTCCTGAAGATCATAAAGCAAAAGTGGACAAGCTGGAGGTGAAGCGAATGGCACTCTATAGTATTAGTTCAGCAATCAAAGAAATACGTGAGCTTACTTGTGCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC WRC

Protein Analysis

1041

Amino Acids

117.19

Weight (kDa)

5.79

Isoelectric Point (pI)

57.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JmjC	PF02373	888 - 986	5.6e-08	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21430
fragaria_vesca	FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760
malus_domestica	MD05G1326700.v1.1 MD10G1304800.v1.1
prunus_persica	Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1
pyrus_communis	pycom05g30110 pycom10g25720
rosa_chinensis	RchiOBHm_Chr5g0005871
rosa_laevigata	RLG00000016376 RLG00000031332 RLG00000031334 RLG00000031337 RLG00000031345 RLG00000031346 RLG00000031385
rosa_multiflora	Rmu_sc0002694.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070030
rosa_rugosa	Rorug04G0418700 Rorug04G0418800 Rorug04G0418900
rosa_samantha	Rh5AG046200 Rh5BG044900 Rh5CG053800 Rh5DG044700
rosa_wichuraiana	Rw5G004640

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1040
AasI	GACNNNNNNGTC	2 cut(s)	970, 1258
AbsI	CCTCGAGG	1 cut(s)	607
Acc36I	ACCTGC	1 cut(s)	131
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	2 cut(s)	168, 1154
AccBSI	CCGCTC	1 cut(s)	1160
AccI	GTMKAC	2 cut(s)	377, 1278
AccII	CGCG	3 cut(s)	635, 834, 1219
AciI	CCGC	9 cut(s)	30, 409, 412, 635, 643, 1158, 1217, 1526, 1918
AclWI	GGATC	7 cut(s)	285, 526, 1601, 1832, 1845, 1958, 2625
AcoI	YGGCCR	3 cut(s)	541, 740, 2638
AcsI	RAATTY	5 cut(s)	1294, 1301, 1696, 2415, 2840
AcuI	CTGAAG	4 cut(s)	1638, 1638, 2619, 3039
AcvI	CACGTG	2 cut(s)	244, 1004
AcyI	GRCGYC	1 cut(s)	478
AfaI	GTAC	9 cut(s)	51, 170, 799, 1266, 1362, 2108, 2223, 2912, 2940
AflIII	ACRYGT	6 cut(s)	241, 243, 832, 1659, 2770, 2941
AhdI	GACNNNNNGTC	1 cut(s)	836
AjiI	CACGTC	2 cut(s)	112, 2121
AjnI	CCWGG	6 cut(s)	25, 121, 587, 598, 703, 1089
Alw21I	GWGCWC	2 cut(s)	42, 2952
Alw26I	GTCTC	5 cut(s)	469, 571, 749, 2003, 2967
AlwI	GGATC	7 cut(s)	285, 526, 1601, 1832, 1845, 1958, 2625
Ama87I	CYCGRG	1 cut(s)	607
AoxI	GGCC	7 cut(s)	106, 185, 228, 541, 740, 2553, 2638
ApaI	GGGCCC	1 cut(s)	189
ApoI	RAATTY	5 cut(s)	1294, 1301, 1696, 2415, 2840
ArsI	GACNNNNNNTTYG	2 cut(s)	1409, 1441
Asp700I	GAANNNNTTC	2 cut(s)	1761, 2058
Asp718I	GGTACC	1 cut(s)	168
AspA2I	CCTAGG	1 cut(s)	388
AspLEI	GCGC	3 cut(s)	457, 928, 1211
AspS9I	GGNCC	6 cut(s)	32, 185, 186, 602, 1175, 2180
AsuHPI	GGTGA	6 cut(s)	15, 1562, 1757, 2597, 2604, 3064
AvaI	CYCGRG	1 cut(s)	607
AvaII	GGWCC	4 cut(s)	32, 602, 1175, 2180
AvrII	CCTAGG	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	189
BalI	TGGCCA	1 cut(s)	2640
BamHI	GGATCC	1 cut(s)	1837
BanI	GGYRCC	2 cut(s)	168, 1154
BanII	GRGCYC	2 cut(s)	42, 189
BarI	GAAGNNNNNNTAC	2 cut(s)	2994, 3026
BbrPI	CACGTG	2 cut(s)	244, 1004
BbsI	GAAGAC	3 cut(s)	69, 857, 2361
Bbv12I	GWGCWC	2 cut(s)	42, 2952
BccI	CCATC	7 cut(s)	230, 716, 785, 1001, 1255, 1505, 2522
BceAI	ACGGC	5 cut(s)	164, 215, 442, 755, 866
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	6 cut(s)	27, 123, 589, 600, 705, 1091
BclI	TGATCA	1 cut(s)	2791
BcoDI	GTCTC	5 cut(s)	469, 571, 749, 2003, 2967
BfmI	CTRYAG	2 cut(s)	2206, 3070
BfoI	RGCGCY	1 cut(s)	1212
BfuAI	ACCTGC	1 cut(s)	131
BlnI	CCTAGG	1 cut(s)	388
BmcAI	AGTACT	1 cut(s)	1266
Bme1390I	CCNGG	6 cut(s)	27, 123, 589, 600, 705, 1091
Bme18I	GGWCC	4 cut(s)	32, 602, 1175, 2180
BmeRI	GACNNNNNGTC	1 cut(s)	836
BmeT110I	CYCGRG	1 cut(s)	607
BmgBI	CACGTC	2 cut(s)	112, 2121
BmgT120I	GGNCC	6 cut(s)	32, 185, 186, 602, 1175, 2180
BmiI	GGNNCC	9 cut(s)	170, 186, 187, 220, 604, 711, 1156, 1177, 1839
BmrFI	CCNGG	6 cut(s)	27, 123, 589, 600, 705, 1091
BoxI	GACNNNNGTC	1 cut(s)	600
BpiI	GAAGAC	3 cut(s)	69, 857, 2361
BplI	GAGNNNNNCTC	2 cut(s)	1660, 1692
BpmI	CTGGAG	3 cut(s)	811, 1795, 3068
BpuEI	CTTGAG	3 cut(s)	1373, 1886, 2816
Bsa29I	ATCGAT	2 cut(s)	720, 1340
BsaAI	YACGTR	4 cut(s)	244, 1004, 1276, 3101
BsaBI	GATNNNNATC	1 cut(s)	1710
BsaHI	GRCGYC	1 cut(s)	478
BsaI	GGTCTC	2 cut(s)	749, 2003
BsaJI	CCNNGG	9 cut(s)	164, 388, 598, 704, 907, 954, 975, 1530, 2855
BsaWI	WCCGGW	4 cut(s)	34, 1455, 1840, 2614
BsaXI	ACNNNNNCTCC	6 cut(s)	24, 54, 1768, 1798, 2604, 2634
Bse118I	RCCGGY	3 cut(s)	260, 1073, 2691
Bse1I	ACTGG	3 cut(s)	210, 1778, 2989
Bse3DI	GCAATG	4 cut(s)	555, 1875, 2422, 3123
Bse8I	GATNNNNATC	1 cut(s)	1710
BseBI	CCWGG	6 cut(s)	27, 123, 589, 600, 705, 1091
BseCI	ATCGAT	2 cut(s)	720, 1340
BseDI	CCNNGG	9 cut(s)	164, 388, 598, 704, 907, 954, 975, 1530, 2855
BseJI	GATNNNNATC	1 cut(s)	1710
BseMI	GCAATG	4 cut(s)	555, 1875, 2422, 3123
BseMII	CTCAG	4 cut(s)	363, 786, 2541, 2737
BseNI	ACTGG	3 cut(s)	210, 1778, 2989
BseRI	GAGGAG	5 cut(s)	32, 625, 824, 1885, 2621
BseSI	GKGCMC	1 cut(s)	189
BseX3I	CGGCCG	1 cut(s)	740
BseYI	CCCAGC	1 cut(s)	188
BsgI	GTGCAG	3 cut(s)	509, 1840, 2655
Bsh1236I	CGCG	3 cut(s)	635, 834, 1219
Bsh1285I	CGRYCG	2 cut(s)	639, 743
BshFI	GGCC	7 cut(s)	108, 187, 230, 543, 742, 2555, 2640
BshNI	GGYRCC	2 cut(s)	168, 1154
BshVI	ATCGAT	2 cut(s)	720, 1340
BsiEI	CGRYCG	2 cut(s)	639, 743
BsiHKAI	GWGCWC	2 cut(s)	42, 2952
BsiHKCI	CYCGRG	1 cut(s)	607
BsiSI	CCGG	9 cut(s)	35, 261, 569, 693, 1074, 1456, 1841, 2615, 2692
BslFI	GGGAC	4 cut(s)	456, 538, 588, 1161
BsmAI	GTCTC	5 cut(s)	469, 571, 749, 2003, 2967
BsmBI	CGTCTC	1 cut(s)	469
BsmFI	GGGAC	4 cut(s)	456, 538, 588, 1161
BsmI	GAATGC	1 cut(s)	2495
BsnI	GGCC	7 cut(s)	108, 187, 230, 543, 742, 2555, 2640
Bso31I	GGTCTC	2 cut(s)	749, 2003
BsoBI	CYCGRG	1 cut(s)	607
Bsp120I	GGGCCC	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	42, 189, 2952
Bsp1407I	TGTACA	3 cut(s)	797, 2221, 2938
Bsp19I	CCATGG	1 cut(s)	907
BspACI	CCGC	9 cut(s)	30, 409, 412, 635, 643, 1158, 1217, 1526, 1918
BspANI	GGCC	7 cut(s)	108, 187, 230, 543, 742, 2555, 2640
BspCNI	CTCAG	4 cut(s)	364, 785, 2542, 2736
BspDI	ATCGAT	2 cut(s)	720, 1340
BspFNI	CGCG	3 cut(s)	635, 834, 1219
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	9 cut(s)	170, 186, 187, 220, 604, 711, 1156, 1177, 1839
BspMAI	CTGCAG	1 cut(s)	2210
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	7 cut(s)	285, 526, 1601, 1832, 1845, 1958, 2625
BspT107I	GGYRCC	2 cut(s)	168, 1154
BspTNI	GGTCTC	2 cut(s)	749, 2003
BsrBI	CCGCTC	1 cut(s)	1160
BsrDI	GCAATG	4 cut(s)	555, 1875, 2422, 3123
BsrFI	RCCGGY	3 cut(s)	260, 1073, 2691
BsrGI	TGTACA	3 cut(s)	797, 2221, 2938
BsrI	ACTGG	3 cut(s)	210, 1778, 2989
BssAI	RCCGGY	3 cut(s)	260, 1073, 2691
BssECI	CCNNGG	9 cut(s)	164, 388, 598, 704, 907, 954, 975, 1530, 2855
BssNAI	GTATAC	2 cut(s)	378, 1279
BssNI	GRCGYC	1 cut(s)	478
BssT1I	CCWWGG	5 cut(s)	388, 907, 975, 1530, 2855
Bst1107I	GTATAC	2 cut(s)	378, 1279
Bst2UI	CCWGG	6 cut(s)	27, 123, 589, 600, 705, 1091
Bst4CI	ACNGT	6 cut(s)	168, 656, 2058, 2217, 2676, 2735
Bst6I	CTCTTC	1 cut(s)	2502
BstACI	GRCGYC	1 cut(s)	478
BstAPI	GCANNNNNTGC	1 cut(s)	1521
BstAUI	TGTACA	3 cut(s)	797, 2221, 2938
BstBAI	YACGTR	4 cut(s)	244, 1004, 1276, 3101
BstC8I	GCNNGC	8 cut(s)	262, 340, 698, 1071, 1075, 1079, 1526, 2693
BstDEI	CTNAG	7 cut(s)	372, 772, 821, 2322, 2550, 2723, 2928
BstDSI	CCRYGG	2 cut(s)	164, 907
BstENI	CCTNNNNNAGG	1 cut(s)	610
BstFNI	CGCG	3 cut(s)	635, 834, 1219
BstH2I	RGCGCY	1 cut(s)	1212
BstHHI	GCGC	3 cut(s)	457, 928, 1211
BstMAI	GTCTC	5 cut(s)	469, 571, 749, 2003, 2967
BstMCI	CGRYCG	2 cut(s)	639, 743
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 540, 773, 831, 1521, 2637
BstNI	CCWGG	6 cut(s)	27, 123, 589, 600, 705, 1091
BstNSI	RCATGY	3 cut(s)	1663, 2774, 2945
BstPAI	GACNNNNGTC	1 cut(s)	600
BstSCI	CCNGG	6 cut(s)	25, 121, 587, 598, 703, 1089
BstSFI	CTRYAG	2 cut(s)	2206, 3070
BstSLI	GKGCMC	1 cut(s)	189
BstSNI	TACGTA	1 cut(s)	1276
BstUI	CGCG	3 cut(s)	635, 834, 1219
BstV2I	GAAGAC	3 cut(s)	69, 857, 2361
BstX2I	RGATCY	2 cut(s)	1837, 2617
BstYI	RGATCY	2 cut(s)	1837, 2617
BstZ17I	GTATAC	2 cut(s)	378, 1279
BstZI	CGGCCG	1 cut(s)	740
Bsu15I	ATCGAT	2 cut(s)	720, 1340
BsuRI	GGCC	7 cut(s)	108, 187, 230, 543, 742, 2555, 2640
BsuTUI	ATCGAT	2 cut(s)	720, 1340
BtgI	CCRYGG	2 cut(s)	164, 907
BtrI	CACGTC	2 cut(s)	112, 2121
BtsI	GCAGTG	3 cut(s)	691, 2215, 2667
BtsIMutI	CAGTG	9 cut(s)	114, 661, 691, 1771, 2215, 2241, 2667, 2681, 2731
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	8 cut(s)	262, 340, 698, 1071, 1075, 1079, 1526, 2693
CciI	TCATGA	1 cut(s)	805
CfoI	GCGC	3 cut(s)	457, 928, 1211
Cfr10I	RCCGGY	3 cut(s)	260, 1073, 2691
Cfr13I	GGNCC	6 cut(s)	32, 185, 186, 602, 1175, 2180
ClaI	ATCGAT	2 cut(s)	720, 1340
CpoI	CGGWCCG	1 cut(s)	32
CseI	GACGC	3 cut(s)	486, 840, 972
Csp6I	GTAC	9 cut(s)	50, 169, 798, 1265, 1361, 2107, 2222, 2911, 2939
CspI	CGGWCCG	1 cut(s)	32
CviQI	GTAC	9 cut(s)	50, 169, 798, 1265, 1361, 2107, 2222, 2911, 2939
DdeI	CTNAG	7 cut(s)	372, 772, 821, 2322, 2550, 2723, 2928
DraI	TTTAAA	3 cut(s)	1027, 2133, 2845
DrdI	GACNNNNNNGTC	2 cut(s)	970, 1258
DriI	GACNNNNNGTC	1 cut(s)	836
DseDI	GACNNNNNNGTC	2 cut(s)	970, 1258
EaeI	YGGCCR	3 cut(s)	541, 740, 2638
EagI	CGGCCG	1 cut(s)	740
Eam1104I	CTCTTC	1 cut(s)	2502
Eam1105I	GACNNNNNGTC	1 cut(s)	836
EarI	CTCTTC	1 cut(s)	2502
EciI	GGCGGA	2 cut(s)	45, 632
Ecl136II	GAGCTC	1 cut(s)	40
EclXI	CGGCCG	1 cut(s)	740
Eco105I	TACGTA	1 cut(s)	1276
Eco130I	CCWWGG	5 cut(s)	388, 907, 975, 1530, 2855
Eco24I	GRGCYC	2 cut(s)	42, 189
Eco31I	GGTCTC	2 cut(s)	749, 2003
Eco47I	GGWCC	4 cut(s)	32, 602, 1175, 2180
Eco52I	CGGCCG	1 cut(s)	740
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	4 cut(s)	1638, 1638, 2619, 3039
Eco72I	CACGTG	2 cut(s)	244, 1004
Eco88I	CYCGRG	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	610
EcoO109I	RGGNCCY	2 cut(s)	185, 602
EcoRII	CCWGG	6 cut(s)	25, 121, 587, 598, 703, 1089
EcoT14I	CCWWGG	5 cut(s)	388, 907, 975, 1530, 2855
EcoT38I	GRGCYC	2 cut(s)	42, 189
ErhI	CCWWGG	5 cut(s)	388, 907, 975, 1530, 2855
Esp3I	CGTCTC	1 cut(s)	469
FalI	AAGNNNNNCTT	2 cut(s)	1020, 1052
FaqI	GGGAC	4 cut(s)	456, 538, 588, 1161
FauI	CCCGC	1 cut(s)	1533
FbaI	TGATCA	1 cut(s)	2791
FblI	GTMKAC	2 cut(s)	377, 1278
FriOI	GRGCYC	2 cut(s)	42, 189
GlaI	GCGC	3 cut(s)	456, 927, 1210
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	3 cut(s)	811, 1795, 3068
HaeII	RGCGCY	1 cut(s)	1212
HaeIII	GGCC	7 cut(s)	108, 187, 230, 543, 742, 2555, 2640
HapII	CCGG	9 cut(s)	35, 261, 569, 693, 1074, 1456, 1841, 2615, 2692
HgaI	GACGC	3 cut(s)	486, 840, 972
HhaI	GCGC	3 cut(s)	457, 928, 1211
Hin1I	GRCGYC	1 cut(s)	478
Hin6I	GCGC	3 cut(s)	455, 926, 1209
HinP1I	GCGC	3 cut(s)	455, 926, 1209
HincII	GTYRAC	2 cut(s)	146, 2994
HindII	GTYRAC	2 cut(s)	146, 2994
HindIII	AAGCTT	1 cut(s)	698
HpaII	CCGG	9 cut(s)	35, 261, 569, 693, 1074, 1456, 1841, 2615, 2692
HphI	GGTGA	6 cut(s)	15, 1562, 1757, 2597, 2604, 3064
Hpy166II	GTNNAC	9 cut(s)	146, 378, 886, 1279, 2213, 2745, 2939, 2994, 3040
Hpy8I	GTNNAC	9 cut(s)	146, 378, 886, 1279, 2213, 2745, 2939, 2994, 3040
Hpy99I	CGWCG	3 cut(s)	87, 236, 1167
HpyAV	CCTTC	5 cut(s)	910, 938, 1820, 2017, 2721
HpyCH4III	ACNGT	6 cut(s)	168, 656, 2058, 2217, 2676, 2735
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 540, 773, 831, 1521, 2637
HpyF3I	CTNAG	7 cut(s)	372, 772, 821, 2322, 2550, 2723, 2928
Hsp92I	GRCGYC	1 cut(s)	478
HspAI	GCGC	3 cut(s)	455, 926, 1209
KpnI	GGTACC	1 cut(s)	172
KroI	GCCGGC	3 cut(s)	260, 1073, 2691
KroNI	GCCGGC	3 cut(s)	262, 1075, 2693
Ksp22I	TGATCA	1 cut(s)	2791
LmnI	GCTCC	5 cut(s)	37, 45, 431, 830, 1872
MaeIII	GTNAC	8 cut(s)	112, 246, 1480, 1550, 2334, 2520, 2610, 2974
MbiI	CCGCTC	1 cut(s)	1160
MfeI	CAATTG	1 cut(s)	939
MflI	RGATCY	2 cut(s)	1837, 2617
MhlI	GDGCHC	3 cut(s)	42, 189, 2952
MlsI	TGGCCA	1 cut(s)	2640
MluI	ACGCGT	1 cut(s)	832
MluNI	TGGCCA	1 cut(s)	2640
MlyI	GAGTC	8 cut(s)	764, 980, 1091, 2375, 2618, 2669, 2804, 2823
MmeI	TCCRAC	2 cut(s)	760, 1571
Mox20I	TGGCCA	1 cut(s)	2640
MroNI	GCCGGC	3 cut(s)	260, 1073, 2691
MroXI	GAANNNNTTC	2 cut(s)	1761, 2058
MscI	TGGCCA	1 cut(s)	2640
MseI	TTAA	5 cut(s)	290, 1026, 1586, 2132, 2844
MslI	CAYNNNNRTG	3 cut(s)	320, 2736, 2769
Msp20I	TGGCCA	1 cut(s)	2640
MspA1I	CMGCKG	2 cut(s)	1635, 1920
MspI	CCGG	9 cut(s)	35, 261, 569, 693, 1074, 1456, 1841, 2615, 2692
MspR9I	CCNGG	6 cut(s)	27, 123, 589, 600, 705, 1091
MunI	CAATTG	1 cut(s)	939
Mva1269I	GAATGC	1 cut(s)	2495
MvaI	CCWGG	6 cut(s)	27, 123, 589, 600, 705, 1091
MvnI	CGCG	3 cut(s)	635, 834, 1219
MwoI	GCNNNNNNNGC	6 cut(s)	27, 540, 773, 831, 1521, 2637
NaeI	GCCGGC	3 cut(s)	262, 1075, 2693
NcoI	CCATGG	1 cut(s)	907
NgoMIV	GCCGGC	3 cut(s)	260, 1073, 2691
NlaIV	GGNNCC	9 cut(s)	170, 186, 187, 220, 604, 711, 1156, 1177, 1839
NmeAIII	GCCGAG	3 cut(s)	569, 979, 1175
NmuCI	GTSAC	5 cut(s)	112, 246, 1550, 2520, 2610
NspI	RCATGY	3 cut(s)	1663, 2774, 2945
PaeR7I	CTCGAG	1 cut(s)	607
PagI	TCATGA	1 cut(s)	805
PciI	ACATGT	3 cut(s)	1659, 2770, 2941
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 1168
PctI	GAATGC	1 cut(s)	2495
PdiI	GCCGGC	3 cut(s)	262, 1075, 2693
PdmI	GAANNNNTTC	2 cut(s)	1761, 2058
PflFI	GACNNNGTC	1 cut(s)	1819
PfoI	TCCNGGA	1 cut(s)	1089
PleI	GAGTC	8 cut(s)	764, 979, 1091, 2374, 2617, 2668, 2804, 2823
PmaCI	CACGTG	2 cut(s)	244, 1004
PmlI	CACGTG	2 cut(s)	244, 1004
PpsI	GAGTC	8 cut(s)	764, 979, 1091, 2374, 2617, 2668, 2804, 2823
Ppu21I	YACGTR	4 cut(s)	244, 1004, 1276, 3101
PpuMI	RGGWCCY	1 cut(s)	602
PscI	ACATGT	3 cut(s)	1659, 2770, 2941
PshAI	GACNNNNGTC	1 cut(s)	600
PsiI	TTATAA	1 cut(s)	1040
Psp124BI	GAGCTC	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	602
Psp6I	CCWGG	6 cut(s)	25, 121, 587, 598, 703, 1089
PspCI	CACGTG	2 cut(s)	244, 1004
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	6 cut(s)	25, 121, 587, 598, 703, 1089
PspN4I	GGNNCC	9 cut(s)	170, 186, 187, 220, 604, 711, 1156, 1177, 1839
PspOMI	GGGCCC	1 cut(s)	185
PspPI	GGNCC	6 cut(s)	32, 185, 186, 602, 1175, 2180
PspPPI	RGGWCCY	1 cut(s)	602
PspXI	VCTCGAGB	1 cut(s)	607
PsrI	GAACNNNNNNTAC	2 cut(s)	2205, 2237
PstI	CTGCAG	1 cut(s)	2210
PsuI	RGATCY	2 cut(s)	1837, 2617
PsyI	GACNNNGTC	1 cut(s)	1819
PvuII	CAGCTG	1 cut(s)	1635
RsaI	GTAC	9 cut(s)	51, 170, 799, 1266, 1362, 2108, 2223, 2912, 2940
RsaNI	GTAC	9 cut(s)	50, 169, 798, 1265, 1361, 2107, 2222, 2911, 2939
RseI	CAYNNNNRTG	3 cut(s)	320, 2736, 2769
Rsr2I	CGGWCCG	1 cut(s)	32
RsrII	CGGWCCG	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	5 cut(s)	290, 1026, 1586, 2132, 2844
Sau96I	GGNCC	6 cut(s)	32, 185, 186, 602, 1175, 2180
ScaI	AGTACT	1 cut(s)	1266
SchI	GAGTC	8 cut(s)	764, 980, 1091, 2375, 2618, 2669, 2804, 2823
ScrFI	CCNGG	6 cut(s)	27, 123, 589, 600, 705, 1091
SduI	GDGCHC	3 cut(s)	42, 189, 2952
SfcI	CTRYAG	2 cut(s)	2206, 3070
Sfr274I	CTCGAG	1 cut(s)	607
SinI	GGWCC	4 cut(s)	32, 602, 1175, 2180
SlaI	CTCGAG	1 cut(s)	607
SmiMI	CAYNNNNRTG	3 cut(s)	320, 2736, 2769
SmlI	CTYRAG	4 cut(s)	607, 1388, 1865, 2831
SmoI	CTYRAG	4 cut(s)	607, 1388, 1865, 2831
SnaBI	TACGTA	1 cut(s)	1276
SsiI	CCGC	9 cut(s)	30, 409, 412, 635, 643, 1158, 1217, 1526, 1918
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	6 cut(s)	25, 121, 587, 598, 703, 1089
StyI	CCWWGG	5 cut(s)	388, 907, 975, 1530, 2855
TaaI	ACNGT	6 cut(s)	168, 656, 2058, 2217, 2676, 2735
TatI	WGTACW	6 cut(s)	49, 797, 1264, 2106, 2221, 2938
TauI	GCSGC	3 cut(s)	412, 415, 1160
Tru1I	TTAA	5 cut(s)	290, 1026, 1586, 2132, 2844
Tru9I	TTAA	5 cut(s)	290, 1026, 1586, 2132, 2844
TscAI	CASTG	9 cut(s)	121, 661, 691, 1778, 2215, 2241, 2674, 2681, 2738
TseFI	GTSAC	5 cut(s)	112, 246, 1550, 2520, 2610
Tsp45I	GTSAC	5 cut(s)	112, 246, 1550, 2520, 2610
TspRI	CASTG	9 cut(s)	121, 661, 691, 1778, 2215, 2241, 2674, 2681, 2738
Tth111I	GACNNNGTC	1 cut(s)	1819
VpaK11BI	GGWCC	4 cut(s)	32, 602, 1175, 2180
XagI	CCTNNNNNAGG	1 cut(s)	610
XapI	RAATTY	5 cut(s)	1294, 1301, 1696, 2415, 2840
XbaI	TCTAGA	1 cut(s)	2806
XceI	RCATGY	3 cut(s)	1663, 2774, 2945
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	607
XmaJI	CCTAGG	1 cut(s)	388
XmiI	GTMKAC	2 cut(s)	377, 1278
XmnI	GAANNNNTTC	2 cut(s)	1761, 2058
ZrmI	AGTACT	1 cut(s)	1266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.