Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003373

Physical Location & Seq

Genomic Coordinates Forward (+)

4264544 .. 4265248

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCATTTACGGAAAAGAATTGCTAGAGAATCTTGCTTCTCTGCTGCAACGCGTGAAGAATGCACTAGGAATCTCAAAGAGAGTAATATGTCACTTGATGGGGAATCTGATGTTGATTCTGAGGCCACGTTGAGTTGCTCTGGGTCTATCAATGGTTATGAAACATCTGAAGATGAGGAGTCACCGGATCTCCTTGAAAGCTCAAATGGCCATGAAAAACCCTTTGTAGAGTCATGCACTGCACAGTGGGATGTTTTCCGCCAGCAAGATGTTCCGAAACTTGTAGAATATCTCAGAAGGCACTGTAATGAATTTACTCGTAAATATGACGTTCATAAACATGTTGCTCATCCAATTCTTGATCAGAGTTTCTTTCTAGACTCAATTCACAAAATAAGACTCAAGGAAGAATTTAGTAGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC WRC

Protein Analysis

142

Amino Acids

16.26

Weight (kDa)

5.23

Isoelectric Point (pI)

79.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21430
fragaria_vesca	FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760
malus_domestica	MD05G1326700.v1.1 MD10G1304800.v1.1
prunus_persica	Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1
pyrus_communis	pycom05g30110 pycom10g25720
rosa_chinensis	RchiOBHm_Chr5g0005871
rosa_laevigata	RLG00000016376 RLG00000031332 RLG00000031334 RLG00000031337 RLG00000031345 RLG00000031346 RLG00000031385
rosa_multiflora	Rmu_sc0002694.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070030
rosa_rugosa	Rorug04G0418700 Rorug04G0418800 Rorug04G0418900
rosa_samantha	Rh5AG046200 Rh5BG044900 Rh5CG053800 Rh5DG044700
rosa_wichuraiana	Rw5G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	52
AciI	CCGC	1 cut(s)	259
AclWI	GGATC	1 cut(s)	195
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	2 cut(s)	311, 410
AcuI	CTGAAG	1 cut(s)	189
AflIII	ACRYGT	2 cut(s)	50, 340
AgsI	TTSAA	1 cut(s)	197
AluBI	AGCT	1 cut(s)	201
AluI	AGCT	1 cut(s)	201
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	2 cut(s)	123, 208
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	2 cut(s)	311, 410
AsuHPI	GGTGA	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	361
BfaI	CTAG	3 cut(s)	24, 66, 377
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	386
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
BseGI	GGATG	2 cut(s)	256, 349
BseMII	CTCAG	2 cut(s)	111, 307
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	2 cut(s)	125, 210
BsiSI	CCGG	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	125, 210
Bsp143I	GATC	2 cut(s)	187, 361
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	2 cut(s)	125, 210
BspCNI	CTCAG	2 cut(s)	112, 306
BspFNI	CGCG	1 cut(s)	52
BspPI	GGATC	1 cut(s)	195
BssMI	GATC	2 cut(s)	187, 361
Bst4CI	ACNGT	2 cut(s)	246, 305
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	120, 293
BstF5I	GGATG	2 cut(s)	256, 349
BstFNI	CGCG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	190, 364
BstMBI	GATC	2 cut(s)	187, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	344
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	125, 210
BtsCI	GGATG	2 cut(s)	256, 349
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	3 cut(s)	237, 251, 301
Cac8I	GCNNGC	1 cut(s)	263
CviAII	CATG	3 cut(s)	212, 234, 341
CviJI	RGCY	3 cut(s)	125, 201, 210
CviKI_1	RGCY	3 cut(s)	125, 201, 210
DdeI	CTNAG	2 cut(s)	120, 293
DpnI	GATC	2 cut(s)	189, 363
DpnII	GATC	2 cut(s)	187, 361
EaeI	YGGCCR	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	215, 237, 344
FaiI	YATR	7 cut(s)	89, 159, 213, 235, 327, 336, 342
FatI	CATG	3 cut(s)	211, 233, 340
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	2 cut(s)	263, 336
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	3 cut(s)	24, 66, 377
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	125, 210
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	3 cut(s)	215, 237, 344
HinfI	GANTC	8 cut(s)	29, 70, 104, 116, 179, 230, 380, 399
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	174
Hpy188I	TCNGA	6 cut(s)	109, 121, 169, 276, 296, 366
Hpy188III	TCNNGA	2 cut(s)	359, 377
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	2 cut(s)	246, 305
HpyCH4IV	ACGT	2 cut(s)	128, 330
HpyCH4V	TGCA	5 cut(s)	4, 47, 63, 237, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	2 cut(s)	120, 293
HpySE526I	ACGT	2 cut(s)	128, 330
Hsp92II	CATG	3 cut(s)	215, 237, 344
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	187, 361
LpnPI	CCDG	3 cut(s)	126, 198, 275
Lsp1109I	GCAGC	1 cut(s)	31
MaeI	CTAG	3 cut(s)	24, 66, 377
MaeII	ACGT	2 cut(s)	128, 330
MaeIII	GTNAC	2 cut(s)	90, 180
MalI	GATC	2 cut(s)	189, 363
MboI	GATC	2 cut(s)	187, 361
MboII	GAAGA	3 cut(s)	68, 182, 419
MflI	RGATCY	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	5 cut(s)	18, 311, 354, 384, 410
MluI	ACGCGT	1 cut(s)	50
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	4 cut(s)	188, 239, 374, 393
MnlI	CCTC	2 cut(s)	115, 169
Mox20I	TGGCCA	1 cut(s)	210
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	210
MslI	CAYNNNNRTG	2 cut(s)	306, 339
Msp20I	TGGCCA	1 cut(s)	210
MspI	CCGG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	65
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	2 cut(s)	187, 361
NlaIII	CATG	3 cut(s)	215, 237, 344
NmuCI	GTSAC	2 cut(s)	90, 180
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	344
PciI	ACATGT	1 cut(s)	340
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	4 cut(s)	29, 70, 104, 116
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	4 cut(s)	187, 238, 374, 393
PpsI	GAGTC	4 cut(s)	187, 238, 374, 393
PscI	ACATGT	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	187
RseI	CAYNNNNRTG	2 cut(s)	306, 339
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	187, 361
SchI	GAGTC	4 cut(s)	188, 239, 374, 393
SetI	ASST	3 cut(s)	131, 203, 333
SmiMI	CAYNNNNRTG	2 cut(s)	306, 339
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	5 cut(s)	18, 311, 354, 384, 410
SsiI	CCGC	1 cut(s)	259
SspMI	CTAG	3 cut(s)	24, 66, 377
TaaI	ACNGT	2 cut(s)	246, 305
TaiI	ACGT	2 cut(s)	131, 333
TasI	AATT	5 cut(s)	18, 311, 354, 384, 410
TfiI	GAWTC	4 cut(s)	29, 70, 104, 116
TscAI	CASTG	3 cut(s)	244, 251, 308
TseFI	GTSAC	2 cut(s)	90, 180
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	2 cut(s)	90, 180
TspDTI	ATGAA	4 cut(s)	174, 228, 323, 324
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	3 cut(s)	244, 251, 308
XapI	RAATTY	2 cut(s)	311, 410
XbaI	TCTAGA	1 cut(s)	376
XceI	RCATGY	1 cut(s)	344
XspI	CTAG	3 cut(s)	24, 66, 377
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.