Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003373

Physical Location & Seq

Genomic Coordinates Forward (+)

4262248 .. 4264393

Gene Structure 2146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGTGTCTTCAGTTTGTCGAGGAACTTGCCCCTGTAAGGAATGCTCTTCAAATCAACCTAAAGATGCTGAAAGATTATGTGGGGGTTAAAAATAAAGTTGAAATTATATTACAGTTTCATTACCTCGTCTGTATGCTTCTCCCCGTGCTGAAACAAATCAACCAAGATCAGAAGGTTGAGCTGGAAGCAGAGGCAAAAATGAGAGGGAAAAAGCTCTCCGAAGTTTATATCAAGCAGGCTGAATTTAGCTGCAGTGAACAAAACAGCCGCAATAAATGCAAAGCTTCCATTGTGGATCTTCATAGAAGCTGCCAAAATTGTTCCTATAACCTTTGTTTGAGCTGTTGTCGAGATCAATTTCAGGGGACTTTCCGGGGAGGTATAAATACATTTCTCTCAAAGTGTTCTTGGGTCTCTGGTAAGGCGAAGATTCAGAAAAGGCCAATAACTACCCATAAGCAAAATGTCCGGTATCTGTCGTCATTTGCATCAGTAACTAACTGGAAAGATTGTAATGCTGTTGACGGTATATCTTGCCCGCCCAAGGAGTTTGGCGGTTGTGGTGAAAGTTTCCTTGATTTGAGATGCTTTTTCCCTATAAGTTGGATCAAAGAGCTAGAAATAAGCGCAGAAGAAATAAAGCACTGGAGTAAAGGTCATCCTGTTATAGTCCGAGATGTCCTTCGGACTACGTCAGATTTGAGTTGGGATCCAGTATTCATGTTCTGCACTTATCTTGAGAGGAGCATTGCTAGATATGAAAATAACAAAAATGCACAGGAAGCTATCCGCTGCTTGGATTGGTGTGAGGTGGAAATGGGGATCAGGCAGTATTTTATGGGTTCATTAATTGAACGGGGACGTCGGCTTTCTTCACAATTATTTCAAGAACAGTTTCCAGCTCATTATGCTGAAATCATCCAAGCTCTACCACTTCGAGAGTACATGAATCCCACGTCTGGTCTTTTAAATGTTGCTGGTCCATGTGTTTATATTTCGTACGGCTGCAGTGAACAGTTTGTACAGGCTGATTCAGTGATAAAGTTGTGTCATGACTCGTATGATGTGGCACGACACTGTTGTCCAAGAACGGTGACTGCAGTTCTTGCATCTCGATCATCTGAAGCTATAGAATCAATCTGCCACCTCATCAGACCAACTTCACCCAGCATTAATCCAACTTCTTTGTATTTCTTTCTAGTTCAAATTTTCAAGCATTTTGAAGAACTACTGTCGAAAGTCTCTGAAAGAGAAAAGTTAACATTTTGGCACATACATCAGATGCCCCTATTTCTGATGAACAAGTTTCTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC WRC

Protein Analysis

439

Amino Acids

50.5

Weight (kDa)

8.52

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21430
fragaria_vesca	FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760
malus_domestica	MD05G1326700.v1.1 MD10G1304800.v1.1
prunus_persica	Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1
pyrus_communis	pycom05g30110 pycom10g25720
rosa_chinensis	RchiOBHm_Chr5g0005871
rosa_laevigata	RLG00000016376 RLG00000031332 RLG00000031334 RLG00000031337 RLG00000031345 RLG00000031346 RLG00000031385
rosa_multiflora	Rmu_sc0002694.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070030
rosa_rugosa	Rorug04G0418700 Rorug04G0418800 Rorug04G0418900
rosa_samantha	Rh5AG046200 Rh5BG044900 Rh5CG053800 Rh5DG044700
rosa_wichuraiana	Rw5G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1080
AatII	GACGTC	1 cut(s)	865
AciI	CCGC	4 cut(s)	268, 539, 555, 790
AclWI	GGATC	5 cut(s)	303, 614, 704, 717, 830
AcsI	RAATTY	2 cut(s)	242, 1206
AcuI	CTGAAG	1 cut(s)	1143
AcyI	GRCGYC	1 cut(s)	862
AfaI	GTAC	3 cut(s)	944, 1001, 1023
AfiI	CCNNNNNNNGG	4 cut(s)	36, 544, 796, 959
AgsI	TTSAA	7 cut(s)	50, 101, 854, 887, 1205, 1213, 1223
AjiI	CACGTC	1 cut(s)	957
Alw26I	GTCTC	2 cut(s)	418, 1246
AlwI	GGATC	5 cut(s)	303, 614, 704, 717, 830
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	4 cut(s)	249, 309, 792, 1005
ApoI	RAATTY	2 cut(s)	242, 1206
AseI	ATTAAT	2 cut(s)	848, 1173
Asp700I	GAANNNNTTC	1 cut(s)	894
AspLEI	GCGC	1 cut(s)	629
AspS9I	GGNCC	1 cut(s)	980
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	3 cut(s)	575, 1105, 1155
AvaII	GGWCC	1 cut(s)	980
BamHI	GGATCC	1 cut(s)	709
BbvI	GCAGC	4 cut(s)	236, 296, 779, 992
BceAI	ACGGC	1 cut(s)	1018
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	418, 1246
BfaI	CTAG	3 cut(s)	617, 753, 1199
BfmI	CTRYAG	4 cut(s)	250, 1006, 1098, 1128
BisI	GCNGC	5 cut(s)	250, 268, 310, 793, 1006
BlsI	GCNGC	5 cut(s)	251, 269, 311, 794, 1007
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	980
BmgBI	CACGTC	1 cut(s)	957
BmgT120I	GGNCC	1 cut(s)	980
BmiI	GGNNCC	1 cut(s)	711
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	5 cut(s)	54, 497, 575, 1118, 1272
BpmI	CTGGAG	1 cut(s)	667
BpuEI	CTTGAG	1 cut(s)	758
BpuMI	CCSGG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	862
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	373, 543
BsaWI	WCCGGW	1 cut(s)	468
BsaXI	ACNNNNNCTCC	2 cut(s)	640, 670
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 544, 796, 959
Bse1I	ACTGG	3 cut(s)	506, 650, 713
Bse3DI	GCAATG	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	373, 543
BseGI	GGATG	2 cut(s)	658, 918
BseLI	CCNNNNNNNGG	4 cut(s)	36, 544, 796, 959
BseMI	GCAATG	1 cut(s)	747
BseNI	ACTGG	3 cut(s)	506, 650, 713
BseRI	GAGGAG	1 cut(s)	757
BseXI	GCAGC	4 cut(s)	236, 296, 779, 992
BseYI	CCCAGC	1 cut(s)	1166
BsgI	GTGCAG	1 cut(s)	712
BshFI	GGCC	1 cut(s)	442
BsiSI	CCGG	2 cut(s)	373, 469
BsiWI	CGTACG	1 cut(s)	999
BslFI	GGGAC	2 cut(s)	379, 873
BslI	CCNNNNNNNGG	4 cut(s)	36, 544, 796, 959
BsmAI	GTCTC	2 cut(s)	418, 1246
BsmFI	GGGAC	2 cut(s)	379, 873
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	1021
Bsp143I	GATC	7 cut(s)	166, 295, 352, 606, 709, 822, 1115
BspACI	CCGC	4 cut(s)	268, 539, 555, 790
BspANI	GGCC	1 cut(s)	442
BspHI	TCATGA	1 cut(s)	1051
BspLI	GGNNCC	1 cut(s)	711
BspMAI	CTGCAG	3 cut(s)	254, 1010, 1102
BspPI	GGATC	5 cut(s)	303, 614, 704, 717, 830
BspQI	GCTCTTC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	747
BsrGI	TGTACA	1 cut(s)	1021
BsrI	ACTGG	3 cut(s)	506, 650, 713
BssECI	CCNNGG	2 cut(s)	373, 543
BssMI	GATC	7 cut(s)	166, 295, 352, 606, 709, 822, 1115
BssNI	GRCGYC	1 cut(s)	862
BssT1I	CCWWGG	1 cut(s)	543
Bst4CI	ACNGT	7 cut(s)	114, 527, 894, 1017, 1079, 1093, 1233
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	862
BstAPI	GCANNNNNTGC	2 cut(s)	276, 1106
BstAUI	TGTACA	1 cut(s)	1021
BstC8I	GCNNGC	2 cut(s)	237, 539
BstDEI	CTNAG	1 cut(s)	1310
BstF5I	GGATG	2 cut(s)	658, 918
BstHHI	GCGC	1 cut(s)	629
BstKTI	GATC	7 cut(s)	169, 298, 355, 609, 712, 825, 1118
BstMAI	GTCTC	2 cut(s)	418, 1246
BstMBI	GATC	7 cut(s)	166, 295, 352, 606, 709, 822, 1115
BstMWI	GCNNNNNNNGC	4 cut(s)	276, 782, 908, 1106
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	4 cut(s)	250, 1006, 1098, 1128
BstV1I	GCAGC	4 cut(s)	236, 296, 779, 992
BstX2I	RGATCY	2 cut(s)	295, 709
BstYI	RGATCY	2 cut(s)	295, 709
BsuRI	GGCC	1 cut(s)	442
BtrI	CACGTC	1 cut(s)	957
BtsCI	GGATG	2 cut(s)	658, 918
BtsI	GCAGTG	2 cut(s)	259, 1015
BtsIMutI	CAGTG	5 cut(s)	259, 643, 1015, 1041, 1075
Cac8I	GCNNGC	2 cut(s)	237, 539
CciI	TCATGA	1 cut(s)	1051
CfoI	GCGC	1 cut(s)	629
Cfr13I	GGNCC	1 cut(s)	980
Csp6I	GTAC	3 cut(s)	943, 1000, 1022
CviAII	CATG	4 cut(s)	721, 946, 984, 1052
CviQI	GTAC	3 cut(s)	943, 1000, 1022
DdeI	CTNAG	1 cut(s)	1310
DpnI	GATC	7 cut(s)	168, 297, 354, 608, 711, 824, 1117
DpnII	GATC	7 cut(s)	166, 295, 352, 606, 709, 822, 1115
DraI	TTTAAA	1 cut(s)	969
DrdI	GACNNNNNNGTC	1 cut(s)	1080
DseDI	GACNNNNNNGTC	1 cut(s)	1080
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	980
Eco57I	CTGAAG	1 cut(s)	1143
EcoT14I	CCWWGG	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	4 cut(s)	724, 949, 987, 1055
FaqI	GGGAC	2 cut(s)	379, 873
FatI	CATG	4 cut(s)	720, 945, 983, 1051
FauI	CCCGC	1 cut(s)	546
Fnu4HI	GCNGC	5 cut(s)	250, 268, 310, 793, 1006
FokI	GGATG	2 cut(s)	645, 905
Fsp4HI	GCNGC	5 cut(s)	250, 268, 310, 793, 1006
FspBI	CTAG	3 cut(s)	617, 753, 1199
GlaI	GCGC	1 cut(s)	628
GluI	GCNGC	5 cut(s)	250, 268, 310, 793, 1006
GsaI	CCCAGC	1 cut(s)	1170
GsuI	CTGGAG	1 cut(s)	667
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	2 cut(s)	373, 469
HhaI	GCGC	1 cut(s)	629
Hin1I	GRCGYC	1 cut(s)	862
Hin1II	CATG	4 cut(s)	724, 949, 987, 1055
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
HincII	GTYRAC	2 cut(s)	523, 1260
HindII	GTYRAC	2 cut(s)	523, 1260
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	5 cut(s)	430, 949, 1031, 1055, 1133
HpaI	GTTAAC	1 cut(s)	1260
HpaII	CCGG	2 cut(s)	373, 469
HphI	GGTGA	3 cut(s)	575, 1105, 1155
Hpy166II	GTNNAC	4 cut(s)	257, 523, 1013, 1260
Hpy188III	TCNNGA	6 cut(s)	350, 737, 887, 938, 1052, 1113
Hpy8I	GTNNAC	4 cut(s)	257, 523, 1013, 1260
Hpy99I	CGWCG	1 cut(s)	867
HpyAV	CCTTC	2 cut(s)	166, 692
HpyCH4III	ACNGT	7 cut(s)	114, 527, 894, 1017, 1079, 1093, 1233
HpyCH4IV	ACGT	3 cut(s)	692, 862, 956
HpyCH4V	TGCA	8 cut(s)	252, 279, 488, 729, 776, 1008, 1100, 1109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	276, 782, 908, 1106
HpyF3I	CTNAG	1 cut(s)	1310
HpySE526I	ACGT	3 cut(s)	692, 862, 956
Hsp92I	GRCGYC	1 cut(s)	862
Hsp92II	CATG	4 cut(s)	724, 949, 987, 1055
HspAI	GCGC	1 cut(s)	627
KspAI	GTTAAC	1 cut(s)	1260
Kzo9I	GATC	7 cut(s)	166, 295, 352, 606, 709, 822, 1115
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	744
Lsp1109I	GCAGC	4 cut(s)	236, 296, 779, 992
LweI	GCATC	5 cut(s)	54, 497, 575, 1118, 1272
MaeI	CTAG	3 cut(s)	617, 753, 1199
MaeII	ACGT	3 cut(s)	692, 862, 956
MaeIII	GTNAC	2 cut(s)	493, 1093
MalI	GATC	7 cut(s)	168, 297, 354, 608, 711, 824, 1117
MboI	GATC	7 cut(s)	166, 295, 352, 606, 709, 822, 1115
MboII	GAAGA	6 cut(s)	38, 290, 439, 644, 864, 1235
MflI	RGATCY	2 cut(s)	295, 709
MluCI	AATT	7 cut(s)	102, 242, 316, 356, 849, 878, 1206
MlyI	GAGTC	1 cut(s)	1049
MmeI	TCCRAC	2 cut(s)	584, 1202
MnlI	CCTC	8 cut(s)	13, 134, 184, 197, 371, 735, 802, 1157
MroXI	GAANNNNTTC	1 cut(s)	894
MseI	TTAA	5 cut(s)	87, 848, 968, 1173, 1259
MspA1I	CMGCKG	1 cut(s)	792
MspI	CCGG	2 cut(s)	373, 469
MspR9I	CCNGG	1 cut(s)	374
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	276, 782, 908, 1106
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	7 cut(s)	166, 295, 352, 606, 709, 822, 1115
NlaIII	CATG	4 cut(s)	724, 949, 987, 1055
NlaIV	GGNNCC	1 cut(s)	711
NmuCI	GTSAC	1 cut(s)	1093
PagI	TCATGA	1 cut(s)	1051
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	894
PfeI	GAWTC	4 cut(s)	430, 949, 1031, 1133
Pfl23II	CGTACG	1 cut(s)	999
PflFI	GACNNNGTC	1 cut(s)	691
PkrI	GCNGC	5 cut(s)	251, 269, 311, 794, 1007
PleI	GAGTC	1 cut(s)	1049
PpsI	GAGTC	1 cut(s)	1049
PshBI	ATTAAT	2 cut(s)	848, 1173
PspFI	CCCAGC	1 cut(s)	1166
PspLI	CGTACG	1 cut(s)	999
PspN4I	GGNNCC	1 cut(s)	711
PspPI	GGNCC	1 cut(s)	980
PsrI	GAACNNNNNNTAC	2 cut(s)	1005, 1037
PstI	CTGCAG	3 cut(s)	254, 1010, 1102
PsuI	RGATCY	2 cut(s)	295, 709
PsyI	GACNNNGTC	1 cut(s)	691
RsaI	GTAC	3 cut(s)	944, 1001, 1023
RsaNI	GTAC	3 cut(s)	943, 1000, 1022
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	5 cut(s)	87, 848, 968, 1173, 1259
SatI	GCNGC	5 cut(s)	250, 268, 310, 793, 1006
Sau3AI	GATC	7 cut(s)	166, 295, 352, 606, 709, 822, 1115
Sau96I	GGNCC	1 cut(s)	980
SchI	GAGTC	1 cut(s)	1049
ScrFI	CCNGG	1 cut(s)	374
SfaNI	GCATC	5 cut(s)	54, 497, 575, 1118, 1272
SfcI	CTRYAG	4 cut(s)	250, 1006, 1098, 1128
SinI	GGWCC	1 cut(s)	980
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
Sse9I	AATT	7 cut(s)	102, 242, 316, 356, 849, 878, 1206
SsiI	CCGC	4 cut(s)	268, 539, 555, 790
SspMI	CTAG	3 cut(s)	617, 753, 1199
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	7 cut(s)	114, 527, 894, 1017, 1079, 1093, 1233
TaiI	ACGT	3 cut(s)	695, 865, 959
TaqI	TCGA	5 cut(s)	18, 349, 937, 1114, 1235
TasI	AATT	7 cut(s)	102, 242, 316, 356, 849, 878, 1206
TatI	WGTACW	2 cut(s)	942, 1021
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	4 cut(s)	430, 949, 1031, 1133
Tru1I	TTAA	5 cut(s)	87, 848, 968, 1173, 1259
Tru9I	TTAA	5 cut(s)	87, 848, 968, 1173, 1259
TscAI	CASTG	5 cut(s)	259, 650, 1015, 1041, 1082
TseFI	GTSAC	1 cut(s)	1093
TseI	GCWGC	4 cut(s)	249, 309, 792, 1005
Tsp45I	GTSAC	1 cut(s)	1093
TspDTI	ATGAA	7 cut(s)	107, 290, 709, 774, 834, 962, 1313
TspRI	CASTG	5 cut(s)	259, 650, 1015, 1041, 1082
Tth111I	GACNNNGTC	1 cut(s)	691
VpaK11BI	GGWCC	1 cut(s)	980
VspI	ATTAAT	2 cut(s)	848, 1173
XapI	RAATTY	2 cut(s)	242, 1206
XmnI	GAANNNNTTC	1 cut(s)	894
XspI	CTAG	3 cut(s)	617, 753, 1199
ZraI	GACGTC	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.