Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003373

Physical Location & Seq

Genomic Coordinates Forward (+)

5990194 .. 5993825

Gene Structure 3632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016376

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCGCGACAATGGCGGGGTGGCTGGGGTCTGATCGGACTGACTCGATCTGGTTTGGGCCTCAGGGATCCGATCTGGTTTGGGTTCTCTCCATGGTGCTTCATCTTCAATGGGACAAGATCTGGGACGCCACGTCTTTATGGTGTGACGGAGATGGCAGATCGATGTCGGCGGCGATCAGACGAAGGGCGGCAAGAACTGGTTCGCTCCTTGCCTGTCAGGAGGCGTCATCAGGAGCCGTTCGTATCTGGTGTGAGACGCGGGGGTGTGCAACGGAGGGGAGTGTTCTTGGATTTAGGATTGAGGACGGACGACATCTCTGGTAGAGAAGTGGATGTCGGGCTTCCTCCGGCTGCGAGGCTATCTTCCAGGTCGGACCCAGGTCCCTCGAGGCAGTGGGGATGGTTGAAGATTGAGGTCGTTCGCCGGAATGGCAGTGGCTGCTTGCTTGTTTGGTGTGGTAGCAATGCCTCCAGCAAGCTTCCTAGGGTTTCAGTGATTTTGTGGGTTAAGTCCTTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.65

Weight (kDa)

11.55

Isoelectric Point (pI)

75.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21430
fragaria_vesca	FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760
malus_domestica	MD05G1326700.v1.1 MD10G1304800.v1.1
prunus_persica	Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1
pyrus_communis	pycom05g30110 pycom10g25720
rosa_chinensis	RchiOBHm_Chr5g0005871
rosa_laevigata	RLG00000016376 RLG00000031332 RLG00000031334 RLG00000031337 RLG00000031345 RLG00000031346 RLG00000031385
rosa_multiflora	Rmu_sc0002694.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070030
rosa_rugosa	Rorug04G0418700 Rorug04G0418800 Rorug04G0418900
rosa_samantha	Rh5AG046200 Rh5BG044900 Rh5CG053800 Rh5DG044700
rosa_wichuraiana	Rw5G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	388
AccII	CGCG	2 cut(s)	7, 261
AciI	CCGC	4 cut(s)	16, 172, 190, 261
AclWI	GGATC	2 cut(s)	62, 75
AcyI	GRCGYC	2 cut(s)	128, 226
AgsI	TTSAA	3 cut(s)	109, 409, 521
AhdI	GACNNNNNGTC	1 cut(s)	132
AjiI	CACGTC	1 cut(s)	134
AjnI	CCWGG	2 cut(s)	368, 379
AluBI	AGCT	1 cut(s)	481
AluI	AGCT	1 cut(s)	481
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	2 cut(s)	62, 75
AlwNI	CAGNNNCTG	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	353, 441
Asp700I	GAANNNNTTC	1 cut(s)	201
AspA2I	CCTAGG	1 cut(s)	485
AspS9I	GGNCC	3 cut(s)	58, 376, 383
AvaI	CYCGRG	1 cut(s)	388
AvaII	GGWCC	2 cut(s)	376, 383
AvrII	CCTAGG	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	62
BamHI	GGATCC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	340, 428
BccI	CCATC	2 cut(s)	148, 396
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	370, 381
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	486
BglI	GCCNNNNNGGC	1 cut(s)	432
BglII	AGATCT	1 cut(s)	119
BisI	GCNGC	4 cut(s)	173, 191, 354, 442
BlnI	CCTAGG	1 cut(s)	485
BlsI	GCNGC	4 cut(s)	174, 192, 355, 443
Bme1390I	CCNGG	2 cut(s)	370, 381
Bme18I	GGWCC	2 cut(s)	376, 383
BmeRI	GACNNNNNGTC	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	388
BmgBI	CACGTC	1 cut(s)	134
BmgT120I	GGNCC	3 cut(s)	58, 376, 383
BmiI	GGNNCC	4 cut(s)	69, 237, 378, 385
BmrFI	CCNGG	2 cut(s)	370, 381
BoxI	GACNNNNGTC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	457
Bsa29I	ATCGAT	1 cut(s)	163
BsaHI	GRCGYC	2 cut(s)	128, 226
BsaJI	CCNNGG	3 cut(s)	92, 379, 485
Bse1I	ACTGG	1 cut(s)	204
Bse21I	CCTNAGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	472
BseBI	CCWGG	2 cut(s)	370, 381
BseCI	ATCGAT	1 cut(s)	163
BseDI	CCNNGG	3 cut(s)	92, 379, 485
BseGI	GGATG	2 cut(s)	340, 407
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	340, 428
BseYI	CCCAGC	1 cut(s)	24
Bsh1236I	CGCG	2 cut(s)	7, 261
BshFI	GGCC	1 cut(s)	60
BshVI	ATCGAT	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	350, 427
BslFI	GGGAC	3 cut(s)	127, 139, 369
BsmAI	GTCTC	1 cut(s)	250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	3 cut(s)	127, 139, 369
BsnI	GGCC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	388
Bsp143I	GATC	7 cut(s)	33, 47, 67, 72, 119, 160, 176
Bsp19I	CCATGG	1 cut(s)	92
Bsp68I	TCGCGA	1 cut(s)	7
BspACI	CCGC	4 cut(s)	16, 172, 190, 261
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	75
BspDI	ATCGAT	1 cut(s)	163
BspFNI	CGCG	2 cut(s)	7, 261
BspLI	GGNNCC	4 cut(s)	69, 237, 378, 385
BspPI	GGATC	2 cut(s)	62, 75
BsrDI	GCAATG	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	3 cut(s)	92, 379, 485
BssMI	GATC	7 cut(s)	33, 47, 67, 72, 119, 160, 176
BssNI	GRCGYC	2 cut(s)	128, 226
BssT1I	CCWWGG	2 cut(s)	92, 485
Bst2UI	CCWGG	2 cut(s)	370, 381
BstACI	GRCGYC	2 cut(s)	128, 226
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	446, 479
BstDEI	CTNAG	1 cut(s)	62
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	340, 407
BstFNI	CGCG	2 cut(s)	7, 261
BstKTI	GATC	7 cut(s)	36, 50, 70, 75, 122, 163, 179
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	7 cut(s)	33, 47, 67, 72, 119, 160, 176
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 432, 441
BstNI	CCWGG	2 cut(s)	370, 381
BstPAI	GACNNNNGTC	1 cut(s)	381
BstSCI	CCNGG	2 cut(s)	368, 379
BstUI	CGCG	2 cut(s)	7, 261
BstV1I	GCAGC	2 cut(s)	340, 428
BstX2I	RGATCY	2 cut(s)	67, 119
BstYI	RGATCY	2 cut(s)	67, 119
Bsu15I	ATCGAT	1 cut(s)	163
Bsu36I	CCTNAGG	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	60
BsuTUI	ATCGAT	1 cut(s)	163
BtgI	CCRYGG	1 cut(s)	92
BtrI	CACGTC	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	340, 407
BtsI	GCAGTG	2 cut(s)	401, 442
BtsIMutI	CAGTG	3 cut(s)	401, 442, 501
BtuMI	TCGCGA	1 cut(s)	7
Cac8I	GCNNGC	2 cut(s)	446, 479
CaiI	CAGNNNCTG	1 cut(s)	441
Cfr13I	GGNCC	3 cut(s)	58, 376, 383
ClaI	ATCGAT	1 cut(s)	163
CseI	GACGC	3 cut(s)	136, 215, 267
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	8 cut(s)	24, 60, 238, 343, 353, 361, 441, 481
CviKI_1	RGCY	8 cut(s)	24, 60, 238, 343, 353, 361, 441, 481
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	7 cut(s)	35, 49, 69, 74, 121, 162, 178
DpnII	GATC	7 cut(s)	33, 47, 67, 72, 119, 160, 176
DriI	GACNNNNNGTC	1 cut(s)	132
Eam1105I	GACNNNNNGTC	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	92, 485
Eco47I	GGWCC	2 cut(s)	376, 383
Eco81I	CCTNAGG	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	368, 379
EcoT14I	CCWWGG	2 cut(s)	92, 485
ErhI	CCWWGG	2 cut(s)	92, 485
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	1 cut(s)	96
FaiI	YATR	2 cut(s)	94, 141
FaqI	GGGAC	3 cut(s)	127, 139, 369
FatI	CATG	1 cut(s)	92
FauI	CCCGC	2 cut(s)	9, 254
Fnu4HI	GCNGC	4 cut(s)	173, 191, 354, 442
FokI	GGATG	2 cut(s)	347, 414
Fsp4HI	GCNGC	4 cut(s)	173, 191, 354, 442
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	4 cut(s)	173, 191, 354, 442
GsaI	CCCAGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	457
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	2 cut(s)	350, 427
HgaI	GACGC	3 cut(s)	136, 215, 267
Hin1I	GRCGYC	2 cut(s)	128, 226
Hin1II	CATG	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	2 cut(s)	350, 427
Hpy188I	TCNGA	5 cut(s)	33, 38, 72, 181, 376
Hpy188III	TCNNGA	3 cut(s)	6, 220, 233
HpyAV	CCTTC	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 432, 441
HpyF3I	CTNAG	1 cut(s)	62
HpySE526I	ACGT	1 cut(s)	133
Hsp92I	GRCGYC	2 cut(s)	128, 226
Hsp92II	CATG	1 cut(s)	96
Kzo9I	GATC	7 cut(s)	33, 47, 67, 72, 119, 160, 176
LmnI	GCTCC	2 cut(s)	212, 235
Lsp1109I	GCAGC	2 cut(s)	340, 428
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	133
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	7 cut(s)	35, 49, 69, 74, 121, 162, 178
MboI	GATC	7 cut(s)	33, 47, 67, 72, 119, 160, 176
MboII	GAAGA	3 cut(s)	97, 357, 421
MflI	RGATCY	2 cut(s)	67, 119
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	354
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	1 cut(s)	510
MspI	CCGG	2 cut(s)	350, 427
MspR9I	CCNGG	2 cut(s)	370, 381
MvaI	CCWGG	2 cut(s)	370, 381
MvnI	CGCG	2 cut(s)	7, 261
MwoI	GCNNNNNNNGC	3 cut(s)	13, 432, 441
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	7 cut(s)	33, 47, 67, 72, 119, 160, 176
NlaIII	CATG	1 cut(s)	96
NlaIV	GGNNCC	4 cut(s)	69, 237, 378, 385
NmuCI	GTSAC	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	7
PaeR7I	CTCGAG	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	201
PkrI	GCNGC	4 cut(s)	174, 192, 355, 443
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	383
PshAI	GACNNNNGTC	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	368, 379
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	2 cut(s)	368, 379
PspN4I	GGNNCC	4 cut(s)	69, 237, 378, 385
PspPI	GGNCC	3 cut(s)	58, 376, 383
PspPPI	RGGWCCY	1 cut(s)	383
PspXI	VCTCGAGB	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	441
PsuI	RGATCY	2 cut(s)	67, 119
RruI	TCGCGA	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	4 cut(s)	173, 191, 354, 442
Sau3AI	GATC	7 cut(s)	33, 47, 67, 72, 119, 160, 176
Sau96I	GGNCC	3 cut(s)	58, 376, 383
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	370, 381
SetI	ASST	5 cut(s)	136, 374, 385, 420, 483
Sfr274I	CTCGAG	1 cut(s)	388
SinI	GGWCC	2 cut(s)	376, 383
SlaI	CTCGAG	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
SsiI	CCGC	4 cut(s)	16, 172, 190, 261
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	368, 379
StyI	CCWWGG	2 cut(s)	92, 485
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	3 cut(s)	46, 163, 389
TauI	GCSGC	2 cut(s)	175, 193
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	3 cut(s)	401, 442, 501
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	353, 441
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	91
TspGWI	ACGGA	3 cut(s)	164, 289, 323
TspRI	CASTG	3 cut(s)	401, 442, 501
VpaK11BI	GGWCC	2 cut(s)	376, 383
XhoI	CTCGAG	1 cut(s)	388
XmaJI	CCTAGG	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.