Rroxscaffold_1G00070030
ERF Family

A domain family that is part of the cupin metalloenzyme superfamily.

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
90870362 .. 90876972
6611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00070030.1

Sequence Viewer

Length: 1656 bp
ATGCCTGTTGGCACAGTGCAGGTTTTGCCATATGGTGATGAGAATGAGGGGAGATTGAGGAAGGGTAAGAGGAAGAGGTGCCATTGGTGTCAGAGAAGTGGAAGTAGTGCTTCTTCCAGCTTGATTAAGTGTTCGAGTTGTAAGAAGCACTTGTTTTGCTTGAACTGCATCAAAGAAAGGTATTTTGATACTCAAGAAGAAGTCAAAATGGCATGTCCAGTTTGTCGAGGAACTTGCCCCTGTAAGGAATGCTCTGAAAATCAACCGAAAGATGCTGAAAGTAAGGATTATGTGGGGGTTAAAAATAAAGTTGAAATTATATTACACTTTCACTACCTCGTCTGTATGCTTCTCCCTGTGCTGAAACAAATCAACCAAGATCAGAAATTTGAGCTGGAAGCAGAGGCAAAAATGAGAGGGAAAAAGCTCTCCGAAGTTTATATCAAGCAGGCTGAATTTAGCTGCAGTGAGCAAAACAGCTGCAATAAATGCAAAGCTCCCATTGTGGATCTTCACAGAAGCTGCCAAAATTGTTCCTATAACCTTTGTTTGAGCTGTTGTCGAGATCATTTTCAGGGGACTTTACGGGGAGGTATAAATACATTTCTCTCAAAGTGCTCTAATATAAATGATACTTGGGTCTCTGGTAAGGGGAAAGTTCAGAAAAGGCCAATAACTACCCATAAGCAAAATGTCCGGTACCTGTCGTCATTTGCATCAACTAACTGGAATGCTTGTAATGCTGTTGACGGTATATCTTGCCCGCCCAAGGAGTTTGGTGGTTGTGGTGACAGCTTCCTTGATTTGAGATGTTTTTTCCCTTTAAGTTGGATCAAAGAGCTAGAAGTAAGTGCAGAAGAAATAGTTTGCAGCTATGAGTTTCCAGAAACTTCAGACATGTCATTGAGCTGCCCTCTATGTTTGGACACAGACCAGAATGTCGATGGACTTCAACAGTTGCAAGAAGCTGCTTTGAGAGAAAATTCAAATGATAACTATCTATTCTACCCCACGCTTTCAGACGTACATGGTGATAATGTTGAACATTTTCAGAAGCACTGGAGTAAAGGTCATCCTGTTATAGTCCGAGATGTCCTTCGGAGTACGTCAGATTTGAGTTGGGATCCAGTGTTCATGTTCTGCACTTATCTTGAGAGGAGCATTGCTAGATATGAAAATAACAAGAATCCACAGGAAGCTATCCACTGCTTGGATTGGTGTGAGGTGGAAATGGGGTTCAGGCAGTATTTTATGGGTTCATTGAACGGGCGAACACAAAAAGACATGTGGAGTGAGACCCTGAAATTGAAGGGTTGGCTTTCTTCACAATTATTTCAAGAACAGTTTCCAGCTCATTATGCTGAAATCATCCAAGCTCTACCACTTCAAGAGTACATGAATCCCTCGTCTGGTCTTTTAAATGTCGCTGCAAGGATGCCACAGGAAATCCCAAAACCTGATCTAGGTCCATGTGTTTATATTTCATATGGCTGCAGTGAGCAGTTTGTACAGGCTGATTCAGTGATAAAGTTGTGTTATGACTCATATGATGTGGTAAGCTTTGGGCATCTCCATTGTGCATTAGTGTCCTGCTTTTTGTTTTTTCTTTCTTTTGATATATGTTGTAATGACACATTTAGGCACGGCACTCTTTAA

Protein Analysis

551

Amino Acids

62.8

Weight (kDa)

6.26

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 938
Acc36I ACCTGC 1 cut(s) 10
Acc65I GGTACC 1 cut(s) 699
AccB1I GGYRCC 2 cut(s) 78, 699
AccB7I CCANNNNNTGG 1 cut(s) 1210
AciI CCGC 1 cut(s) 764
AclWI GGATC 4 cut(s) 516, 839, 1118, 1131
AcsI RAATTY 3 cut(s) 386, 455, 982
AcuI CTGAAG 1 cut(s) 876
AfaI GTAC 5 cut(s) 701, 1026, 1105, 1394, 1509
AfiI CCNNNNNNNGG 5 cut(s) 244, 769, 1210, 1409, 1463
AflIII ACRYGT 2 cut(s) 897, 1284
AgsI TTSAA 9 cut(s) 163, 314, 953, 987, 1043, 1264, 1309, 1337, 1388
AloI GAACNNNNNNTCC 4 cut(s) 1115, 1147, 1220, 1252
Alw21I GWGCWC 1 cut(s) 620
Alw26I GTCTC 2 cut(s) 646, 1289
AlwI GGATC 4 cut(s) 516, 839, 1118, 1131
AlwNI CAGNNNCTG 1 cut(s) 522
AoxI GGCC 1 cut(s) 668
ApeKI GCWGC 8 cut(s) 462, 480, 522, 870, 909, 968, 1427, 1491
ApoI RAATTY 3 cut(s) 386, 455, 982
Asp700I GAANNNNTTC 2 cut(s) 1047, 1344
Asp718I GGTACC 1 cut(s) 699
AspS9I GGNCC 1 cut(s) 1466
AsuHPI GGTGA 3 cut(s) 47, 800, 1043
AvaII GGWCC 1 cut(s) 1466
BaeI ACNNNNGTAYC 2 cut(s) 624, 657
BamHI GGATCC 1 cut(s) 1123
BanI GGYRCC 2 cut(s) 78, 699
BarI GAAGNNNNNNTAC 2 cut(s) 97, 129
Bbv12I GWGCWC 1 cut(s) 620
BbvI GCAGC 8 cut(s) 449, 467, 509, 882, 896, 955, 1414, 1478
BccI CCATC 1 cut(s) 938
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BcoDI GTCTC 2 cut(s) 646, 1289
BfaI CTAG 3 cut(s) 842, 1167, 1463
BfmI CTRYAG 2 cut(s) 463, 1492
BfuAI ACCTGC 1 cut(s) 10
BisI GCNGC 8 cut(s) 463, 481, 523, 871, 910, 969, 1428, 1492
BlsI GCNGC 8 cut(s) 464, 482, 524, 872, 911, 970, 1429, 1493
Bme18I GGWCC 1 cut(s) 1466
BmgT120I GGNCC 1 cut(s) 1466
BmiI GGNNCC 3 cut(s) 80, 701, 1125
BmsI GCATC 5 cut(s) 177, 262, 725, 1425, 1576
BplI GAGNNNNNCTC 2 cut(s) 898, 930
BpmI CTGGAG 1 cut(s) 1081
BpuEI CTTGAG 2 cut(s) 177, 1172
BsaBI GATNNNNATC 1 cut(s) 996
BsaI GGTCTC 2 cut(s) 646, 1289
BsaJI CCNNGG 1 cut(s) 768
BsaWI WCCGGW 1 cut(s) 696
BsaXI ACNNNNNCTCC 2 cut(s) 1054, 1084
Bsc4I CCNNNNNNNGG 5 cut(s) 244, 769, 1210, 1409, 1463
Bse1I ACTGG 4 cut(s) 218, 731, 1064, 1127
Bse3DI GCAATG 1 cut(s) 1161
Bse8I GATNNNNATC 1 cut(s) 996
BseDI CCNNGG 1 cut(s) 768
BseGI GGATG 3 cut(s) 1072, 1368, 1440
BseJI GATNNNNATC 1 cut(s) 996
BseLI CCNNNNNNNGG 5 cut(s) 244, 769, 1210, 1409, 1463
BseMI GCAATG 1 cut(s) 1161
BseNI ACTGG 4 cut(s) 218, 731, 1064, 1127
BseRI GAGGAG 1 cut(s) 1171
BseXI GCAGC 8 cut(s) 449, 467, 509, 882, 896, 955, 1414, 1478
BsgI GTGCAG 3 cut(s) 38, 873, 1126
BshFI GGCC 1 cut(s) 670
BshNI GGYRCC 2 cut(s) 78, 699
BsiHKAI GWGCWC 1 cut(s) 620
BsiSI CCGG 1 cut(s) 697
BslFI GGGAC 1 cut(s) 592
BslI CCNNNNNNNGG 5 cut(s) 244, 769, 1210, 1409, 1463
BsmAI GTCTC 2 cut(s) 646, 1289
BsmFI GGGAC 1 cut(s) 592
BsmI GAATGC 2 cut(s) 254, 736
BsnI GGCC 1 cut(s) 670
Bso31I GGTCTC 2 cut(s) 646, 1289
Bsp1286I GDGCHC 1 cut(s) 620
Bsp1407I TGTACA 1 cut(s) 1507
Bsp143I GATC 6 cut(s) 379, 508, 565, 831, 1123, 1459
BspACI CCGC 1 cut(s) 764
BspANI GGCC 1 cut(s) 670
BspLI GGNNCC 3 cut(s) 80, 701, 1125
BspMAI CTGCAG 2 cut(s) 467, 1496
BspMI ACCTGC 1 cut(s) 10
BspPI GGATC 4 cut(s) 516, 839, 1118, 1131
BspT107I GGYRCC 2 cut(s) 78, 699
BspTNI GGTCTC 2 cut(s) 646, 1289
BsrDI GCAATG 1 cut(s) 1161
BsrGI TGTACA 1 cut(s) 1507
BsrI ACTGG 4 cut(s) 218, 731, 1064, 1127
BssECI CCNNGG 1 cut(s) 768
BssMI GATC 6 cut(s) 379, 508, 565, 831, 1123, 1459
BssT1I CCWWGG 1 cut(s) 768
Bst4CI ACNGT 4 cut(s) 16, 752, 957, 1344
Bst6I CTCTTC 1 cut(s) 68
BstAPI GCANNNNNTGC 2 cut(s) 25, 489
BstAUI TGTACA 1 cut(s) 1507
BstC8I GCNNGC 2 cut(s) 450, 764
BstENI CCTNNNNNAGG 1 cut(s) 1461
BstF5I GGATG 3 cut(s) 1072, 1368, 1440
BstKTI GATC 6 cut(s) 382, 511, 568, 834, 1126, 1462
BstMAI GTCTC 2 cut(s) 646, 1289
BstMBI GATC 6 cut(s) 379, 508, 565, 831, 1123, 1459
BstMWI GCNNNNNNNGC 5 cut(s) 25, 165, 489, 740, 1358
BstNSI RCATGY 3 cut(s) 216, 901, 1288
BstSFI CTRYAG 2 cut(s) 463, 1492
BstV1I GCAGC 8 cut(s) 449, 467, 509, 882, 896, 955, 1414, 1478
BstX2I RGATCY 2 cut(s) 508, 1123
BstYI RGATCY 2 cut(s) 508, 1123
BsuRI GGCC 1 cut(s) 670
BtsCI GGATG 3 cut(s) 1072, 1368, 1440
BtsI GCAGTG 3 cut(s) 472, 1204, 1501
BtsIMutI CAGTG 7 cut(s) 21, 472, 1057, 1134, 1204, 1501, 1527
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 450, 764
CaiI CAGNNNCTG 1 cut(s) 522
Cfr13I GGNCC 1 cut(s) 1466
Csp6I GTAC 5 cut(s) 700, 1025, 1104, 1393, 1508
CviAII CATG 7 cut(s) 213, 898, 1028, 1135, 1285, 1396, 1470
CviQI GTAC 5 cut(s) 700, 1025, 1104, 1393, 1508
DpnI GATC 6 cut(s) 381, 510, 567, 833, 1125, 1461
DpnII GATC 6 cut(s) 379, 508, 565, 831, 1123, 1459
DraI TTTAAA 1 cut(s) 1419
DrdI GACNNNNNNGTC 1 cut(s) 938
DseDI GACNNNNNNGTC 1 cut(s) 938
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 768
Eco31I GGTCTC 2 cut(s) 646, 1289
Eco47I GGWCC 1 cut(s) 1466
Eco57I CTGAAG 1 cut(s) 876
EcoNI CCTNNNNNAGG 1 cut(s) 1461
EcoT14I CCWWGG 1 cut(s) 768
ErhI CCWWGG 1 cut(s) 768
FaeI CATG 7 cut(s) 216, 901, 1031, 1138, 1288, 1399, 1473
FalI AAGNNNNNCTT 4 cut(s) 94, 126, 134, 166
FaqI GGGAC 1 cut(s) 592
FatI CATG 7 cut(s) 212, 897, 1027, 1134, 1284, 1395, 1469
FauI CCCGC 1 cut(s) 771
FauNDI CATATG 3 cut(s) 31, 1486, 1546
Fnu4HI GCNGC 8 cut(s) 463, 481, 523, 871, 910, 969, 1428, 1492
FokI GGATG 3 cut(s) 1059, 1355, 1447
Fsp4HI GCNGC 8 cut(s) 463, 481, 523, 871, 910, 969, 1428, 1492
FspBI CTAG 3 cut(s) 842, 1167, 1463
GluI GCNGC 8 cut(s) 463, 481, 523, 871, 910, 969, 1428, 1492
GsuI CTGGAG 1 cut(s) 1081
HaeIII GGCC 1 cut(s) 670
HapII CCGG 1 cut(s) 697
Hin1II CATG 7 cut(s) 216, 901, 1031, 1138, 1288, 1399, 1473
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HindIII AAGCTT 1 cut(s) 1558
HinfI GANTC 4 cut(s) 1186, 1399, 1517, 1541
HpaII CCGG 1 cut(s) 697
HphI GGTGA 3 cut(s) 47, 800, 1043
Hpy166II GTNNAC 1 cut(s) 748
Hpy188III TCNNGA 6 cut(s) 194, 563, 884, 1151, 1337, 1388
Hpy8I GTNNAC 1 cut(s) 748
HpyAV CCTTC 3 cut(s) 55, 1106, 1303
HpyCH4III ACNGT 4 cut(s) 16, 752, 957, 1344
HpyCH4IV ACGT 2 cut(s) 1023, 1106
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 165, 489, 740, 1358
HpySE526I ACGT 2 cut(s) 1023, 1106
Hsp92II CATG 7 cut(s) 216, 901, 1031, 1138, 1288, 1399, 1473
KpnI GGTACC 1 cut(s) 703
Kzo9I GATC 6 cut(s) 379, 508, 565, 831, 1123, 1459
LmnI GCTCC 2 cut(s) 502, 1158
Lsp1109I GCAGC 8 cut(s) 449, 467, 509, 882, 896, 955, 1414, 1478
LweI GCATC 5 cut(s) 177, 262, 725, 1425, 1576
MaeI CTAG 3 cut(s) 842, 1167, 1463
MaeII ACGT 2 cut(s) 1023, 1106
MaeIII GTNAC 1 cut(s) 788
MalI GATC 6 cut(s) 381, 510, 567, 833, 1125, 1461
MboI GATC 6 cut(s) 379, 508, 565, 831, 1123, 1459
MboII GAAGA 6 cut(s) 85, 105, 209, 503, 869, 1314
MflI RGATCY 2 cut(s) 508, 1123
MhlI GDGCHC 1 cut(s) 620
MluCI AATT 7 cut(s) 315, 386, 455, 529, 982, 1304, 1328
MlyI GAGTC 1 cut(s) 1535
MmeI TCCRAC 1 cut(s) 809
MroXI GAANNNNTTC 2 cut(s) 1047, 1344
MseI TTAA 5 cut(s) 126, 300, 824, 1418, 1654
MspA1I CMGCKG 1 cut(s) 480
MspI CCGG 1 cut(s) 697
Mva1269I GAATGC 2 cut(s) 254, 736
MwoI GCNNNNNNNGC 5 cut(s) 25, 165, 489, 740, 1358
NdeI CATATG 3 cut(s) 31, 1486, 1546
NdeII GATC 6 cut(s) 379, 508, 565, 831, 1123, 1459
NlaIII CATG 7 cut(s) 216, 901, 1031, 1138, 1288, 1399, 1473
NlaIV GGNNCC 3 cut(s) 80, 701, 1125
NmuCI GTSAC 1 cut(s) 788
NspI RCATGY 3 cut(s) 216, 901, 1288
PciI ACATGT 2 cut(s) 897, 1284
PctI GAATGC 2 cut(s) 254, 736
PdmI GAANNNNTTC 2 cut(s) 1047, 1344
PfeI GAWTC 3 cut(s) 1186, 1399, 1517
PflMI CCANNNNNTGG 1 cut(s) 1210
PkrI GCNGC 8 cut(s) 464, 482, 524, 872, 911, 970, 1429, 1493
PleI GAGTC 1 cut(s) 1535
PpsI GAGTC 1 cut(s) 1535
PscI ACATGT 2 cut(s) 897, 1284
PspN4I GGNNCC 3 cut(s) 80, 701, 1125
PspPI GGNCC 1 cut(s) 1466
PstI CTGCAG 2 cut(s) 467, 1496
PstNI CAGNNNCTG 1 cut(s) 522
PsuI RGATCY 2 cut(s) 508, 1123
PvuII CAGCTG 1 cut(s) 480
RsaI GTAC 5 cut(s) 701, 1026, 1105, 1394, 1509
RsaNI GTAC 5 cut(s) 700, 1025, 1104, 1393, 1508
SaqAI TTAA 5 cut(s) 126, 300, 824, 1418, 1654
SatI GCNGC 8 cut(s) 463, 481, 523, 871, 910, 969, 1428, 1492
Sau3AI GATC 6 cut(s) 379, 508, 565, 831, 1123, 1459
Sau96I GGNCC 1 cut(s) 1466
SchI GAGTC 1 cut(s) 1535
SduI GDGCHC 1 cut(s) 620
SfaNI GCATC 5 cut(s) 177, 262, 725, 1425, 1576
SfcI CTRYAG 2 cut(s) 463, 1492
SinI GGWCC 1 cut(s) 1466
SmlI CTYRAG 2 cut(s) 192, 1151
SmoI CTYRAG 2 cut(s) 192, 1151
Sse9I AATT 7 cut(s) 315, 386, 455, 529, 982, 1304, 1328
SsiI CCGC 1 cut(s) 764
SspMI CTAG 3 cut(s) 842, 1167, 1463
StyI CCWWGG 1 cut(s) 768
TaaI ACNGT 4 cut(s) 16, 752, 957, 1344
TaiI ACGT 2 cut(s) 1026, 1109
TaqI TCGA 4 cut(s) 134, 226, 562, 942
TasI AATT 7 cut(s) 315, 386, 455, 529, 982, 1304, 1328
TatI WGTACW 2 cut(s) 1392, 1507
TfiI GAWTC 3 cut(s) 1186, 1399, 1517
Tru1I TTAA 5 cut(s) 126, 300, 824, 1418, 1654
Tru9I TTAA 5 cut(s) 126, 300, 824, 1418, 1654
TscAI CASTG 7 cut(s) 21, 472, 1064, 1134, 1211, 1501, 1527
TseFI GTSAC 1 cut(s) 788
TseI GCWGC 8 cut(s) 462, 480, 522, 870, 909, 968, 1427, 1491
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 5 cut(s) 1123, 1188, 1248, 1412, 1473
TspRI CASTG 7 cut(s) 21, 472, 1064, 1134, 1211, 1501, 1527
Van91I CCANNNNNTGG 1 cut(s) 1210
VpaK11BI GGWCC 1 cut(s) 1466
XagI CCTNNNNNAGG 1 cut(s) 1461
XapI RAATTY 3 cut(s) 386, 455, 982
XceI RCATGY 3 cut(s) 216, 901, 1288
XcmI CCANNNNNNNNNTGG 1 cut(s) 941
XmnI GAANNNNTTC 2 cut(s) 1047, 1344
XspI CTAG 3 cut(s) 842, 1167, 1463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.