Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003373

Physical Location & Seq

Genomic Coordinates Forward (+)

57966881 .. 57968462

Gene Structure 1582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0418900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCAGCGTTTCTCATTTCCTCAGTTCTTGATCCTCACGGCTTGCCTCTCACTTTGTTTGGTTGCTAAAGCTGATCTTCAACGTTTTCAACAGCAAGCAAATGCAGATGGGTCTCTGAGTTTCTTGGTCGTTGGAGATTGGGGAAGACGAGGACTCTACAACCAATCTAAAGTCGCTACCCAGATGGGAATAATTGGAGAGAAAGCACAGACAAACTTCGTCATCTCCACCGGCGACAATTTCTACGATGATGGCTTGACAGGGCCGGATGATCCAGCCTTCAATGAGTCATTTTCCAACATATACACTGCCCCAAGCTTACAGATACCTTGGTACCTTGTGTTGGGCAACCATGACTATAGGGGTGATGCTTTAGCACAACTAAAAATTGACCGTAGATGGTTTTGCTCCAGGCCATTGTTCATTATATATTCAGCAATCGCAGAGTTTTTCTTCGTGGACACAACCCCATTTGTGGATGACTACTTTACAAATCCAAAGGAGCATGTCTATGACTGGAGAGGTGTGCTTCCTCGAGAGGATTACCTTTCAAAACTCCTGAAGGATCTGGATGTAACACTGAAAAATTCCCGTGCAAAATGGAAAATTGTGGTCGGTCACCATACAATTAGAAGTGCAGGACATCATGGTAACACCACTGATCTTGTAACACGCCTTCTCCCAGTCCTTAAGGCAAACAAAATAGATTTTTATATAAACGGGCATGACCATTGCTTGCAGCACATCAGTGATCCTGACAGTAAAATTGAGTTTTTTACCAGTGGAGGTGGCTCCAAGGCATGGAGAGGTGATATCAAGTGGTGGGATCCAAAAGAATTGAAACTGTACTATGACGGCCAAGGTTTTATGTCGGTACAAATGACTAAAACCCGTGCTGACATACAATTCTATGATGTCTTTGGCAATGTTTTGCACAAATGGAGCAAAACCAAAGAGCTCAACTCAGTCGGGCATAGGAAAGCTCTGATGTATGAAGGAAGAGTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC WRC

Protein Analysis

336

Amino Acids

38.5

Weight (kDa)

8.21

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	40 - 245	2.9e-19	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21430
fragaria_vesca	FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760
malus_domestica	MD05G1326700.v1.1 MD10G1304800.v1.1
prunus_persica	Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1
pyrus_communis	pycom05g30110 pycom10g25720
rosa_chinensis	RchiOBHm_Chr5g0005871
rosa_laevigata	RLG00000016376 RLG00000031332 RLG00000031334 RLG00000031337 RLG00000031345 RLG00000031346 RLG00000031385
rosa_multiflora	Rmu_sc0002694.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070030
rosa_rugosa	Rorug04G0418700 Rorug04G0418800 Rorug04G0418900
rosa_samantha	Rh5AG046200 Rh5BG044900 Rh5CG053800 Rh5DG044700
rosa_wichuraiana	Rw5G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	333
AccB7I	CCANNNNNTGG	1 cut(s)	801
AclI	AACGTT	1 cut(s)	82
AclWI	GGATC	6 cut(s)	25, 266, 573, 746, 821, 834
AcoI	YGGCCR	1 cut(s)	856
AcsI	RAATTY	1 cut(s)	586
AcuI	CTGAAG	1 cut(s)	581
AfaI	GTAC	3 cut(s)	335, 848, 876
AfiI	CCNNNNNNNGG	3 cut(s)	343, 475, 801
AflII	CTTAAG	1 cut(s)	689
AgsI	TTSAA	5 cut(s)	80, 89, 283, 552, 841
AjnI	CCWGG	1 cut(s)	410
AleI	CACNNNNGTG	1 cut(s)	747
AluBI	AGCT	4 cut(s)	71, 318, 958, 983
AluI	AGCT	4 cut(s)	71, 318, 958, 983
Alw21I	GWGCWC	1 cut(s)	960
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	6 cut(s)	25, 266, 573, 746, 821, 834
Ama87I	CYCGRG	1 cut(s)	534
AoxI	GGCC	3 cut(s)	263, 413, 856
ApeKI	GCWGC	2 cut(s)	4, 739
ApoI	RAATTY	1 cut(s)	586
Asp718I	GGTACC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	3 cut(s)	377, 611, 821
AvaI	CYCGRG	1 cut(s)	534
BaeI	ACNNNNGTAYC	4 cut(s)	317, 317, 350, 350
BamHI	GGATCC	1 cut(s)	826
BanI	GGYRCC	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	960
BarI	GAAGNNNNNNTAC	2 cut(s)	660, 692
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	960
BbvI	GCAGC	2 cut(s)	16, 751
BccI	CCATC	4 cut(s)	101, 178, 245, 393
BceAI	ACGGC	2 cut(s)	54, 871
BciT130I	CCWGG	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	358
BfrI	CTTAAG	1 cut(s)	689
BisI	GCNGC	2 cut(s)	5, 740
BlsI	GCNGC	2 cut(s)	6, 741
Bme1390I	CCNGG	1 cut(s)	412
BmeT110I	CYCGRG	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	3 cut(s)	335, 793, 828
BmrFI	CCNGG	1 cut(s)	412
BmrI	ACTGGG	1 cut(s)	677
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	677
BpiI	GAAGAC	1 cut(s)	151
BplI	GAGNNNNNCTC	2 cut(s)	947, 979
BpmI	CTGGAG	2 cut(s)	394, 538
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	329, 795, 859
BsaXI	ACNNNNNCTCC	2 cut(s)	663, 693
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 475, 801
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	3 cut(s)	521, 683, 780
Bse3DI	GCAATG	2 cut(s)	730, 931
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	3 cut(s)	329, 795, 859
BseGI	GGATG	3 cut(s)	274, 484, 577
BseLI	CCNNNNNNNGG	3 cut(s)	343, 475, 801
BseMI	GCAATG	2 cut(s)	730, 931
BseMII	CTCAG	3 cut(s)	35, 107, 978
BseNI	ACTGG	3 cut(s)	521, 683, 780
BseXI	GCAGC	2 cut(s)	16, 751
BsgI	GTGCAG	1 cut(s)	657
BshFI	GGCC	3 cut(s)	265, 415, 858
BshNI	GGYRCC	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	960
BsiHKCI	CYCGRG	1 cut(s)	534
BsiSI	CCGG	2 cut(s)	231, 266
BslI	CCNNNNNNNGG	3 cut(s)	343, 475, 801
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	3 cut(s)	265, 415, 858
Bso31I	GGTCTC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	534
Bsp1286I	GDGCHC	1 cut(s)	960
Bsp143I	GATC	7 cut(s)	30, 73, 271, 565, 661, 751, 826
BspANI	GGCC	3 cut(s)	265, 415, 858
BspCNI	CTCAG	3 cut(s)	34, 108, 977
BspLI	GGNNCC	3 cut(s)	335, 793, 828
BspPI	GGATC	6 cut(s)	25, 266, 573, 746, 821, 834
BspT107I	GGYRCC	1 cut(s)	333
BspTI	CTTAAG	1 cut(s)	689
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	730, 931
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	3 cut(s)	521, 683, 780
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	3 cut(s)	329, 795, 859
BssMI	GATC	7 cut(s)	30, 73, 271, 565, 661, 751, 826
BssT1I	CCWWGG	3 cut(s)	329, 795, 859
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	3 cut(s)	395, 761, 846
Bst6I	CTCTTC	1 cut(s)	994
BstAFI	CTTAAG	1 cut(s)	689
BstC8I	GCNNGC	3 cut(s)	43, 96, 737
BstDEI	CTNAG	3 cut(s)	21, 116, 964
BstEII	GGTNACC	1 cut(s)	617
BstF5I	GGATG	3 cut(s)	274, 484, 577
BstKTI	GATC	7 cut(s)	33, 76, 274, 568, 664, 754, 829
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	7 cut(s)	30, 73, 271, 565, 661, 751, 826
BstNI	CCWGG	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	509
BstPI	GGTNACC	1 cut(s)	617
BstSCI	CCNGG	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	16, 751
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	2 cut(s)	565, 826
BstYI	RGATCY	2 cut(s)	565, 826
BsuRI	GGCC	3 cut(s)	265, 415, 858
BtsCI	GGATG	3 cut(s)	274, 484, 577
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	5 cut(s)	306, 578, 657, 754, 787
Cac8I	GCNNGC	3 cut(s)	43, 96, 737
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	334, 847, 875
CspCI	CAANNNNNGTGG	2 cut(s)	646, 681
CviAII	CATG	5 cut(s)	353, 506, 647, 725, 801
CviQI	GTAC	3 cut(s)	334, 847, 875
DdeI	CTNAG	3 cut(s)	21, 116, 964
DpnI	GATC	7 cut(s)	32, 75, 273, 567, 663, 753, 828
DpnII	GATC	7 cut(s)	30, 73, 271, 565, 661, 751, 826
EaeI	YGGCCR	1 cut(s)	856
Eam1104I	CTCTTC	1 cut(s)	994
EarI	CTCTTC	1 cut(s)	994
Ecl136II	GAGCTC	1 cut(s)	958
Eco130I	CCWWGG	3 cut(s)	329, 795, 859
Eco24I	GRGCYC	1 cut(s)	960
Eco31I	GGTCTC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	814
Eco53kI	GAGCTC	1 cut(s)	958
Eco57I	CTGAAG	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	534
Eco91I	GGTNACC	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	958
EcoO65I	GGTNACC	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	410
EcoRV	GATATC	1 cut(s)	814
EcoT14I	CCWWGG	3 cut(s)	329, 795, 859
EcoT38I	GRGCYC	1 cut(s)	960
ErhI	CCWWGG	3 cut(s)	329, 795, 859
FaeI	CATG	5 cut(s)	356, 509, 650, 728, 804
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	5 cut(s)	352, 505, 646, 724, 800
Fnu4HI	GCNGC	2 cut(s)	5, 740
FokI	GGATG	3 cut(s)	281, 491, 584
FriOI	GRGCYC	1 cut(s)	960
Fsp4HI	GCNGC	2 cut(s)	5, 740
GluI	GCNGC	2 cut(s)	5, 740
GsuI	CTGGAG	2 cut(s)	394, 538
HaeIII	GGCC	3 cut(s)	265, 415, 858
HapII	CCGG	2 cut(s)	231, 266
Hin1II	CATG	5 cut(s)	356, 509, 650, 728, 804
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	2 cut(s)	153, 287
HpaII	CCGG	2 cut(s)	231, 266
HphI	GGTGA	3 cut(s)	377, 611, 821
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	2 cut(s)	117, 987
Hpy188III	TCNNGA	5 cut(s)	28, 536, 559, 569, 755
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	4 cut(s)	289, 556, 686, 989
HpyCH4III	ACNGT	3 cut(s)	395, 761, 846
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	6 cut(s)	4, 104, 596, 638, 739, 934
HpyF3I	CTNAG	3 cut(s)	21, 116, 964
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	5 cut(s)	356, 509, 650, 728, 804
KpnI	GGTACC	1 cut(s)	337
Kzo9I	GATC	7 cut(s)	30, 73, 271, 565, 661, 751, 826
LmnI	GCTCC	4 cut(s)	413, 502, 797, 942
Lsp1109I	GCAGC	2 cut(s)	16, 751
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	4 cut(s)	574, 617, 650, 667
MalI	GATC	7 cut(s)	32, 75, 273, 567, 663, 753, 828
MboI	GATC	7 cut(s)	30, 73, 271, 565, 661, 751, 826
MboII	GAAGA	4 cut(s)	68, 156, 445, 1011
MflI	RGATCY	2 cut(s)	565, 826
MhlI	GDGCHC	1 cut(s)	960
MluCI	AATT	9 cut(s)	192, 238, 387, 586, 606, 627, 765, 836, 905
MlyI	GAGTC	2 cut(s)	147, 296
MmeI	TCCRAC	2 cut(s)	112, 321
MnlI	CCTC	9 cut(s)	30, 44, 56, 143, 515, 532, 543, 779, 800
MseI	TTAA	1 cut(s)	690
MslI	CAYNNNNRTG	2 cut(s)	510, 747
MspCI	CTTAAG	1 cut(s)	689
MspI	CCGG	2 cut(s)	231, 266
MspR9I	CCNGG	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	412
NdeII	GATC	7 cut(s)	30, 73, 271, 565, 661, 751, 826
NlaIII	CATG	5 cut(s)	356, 509, 650, 728, 804
NlaIV	GGNNCC	3 cut(s)	335, 793, 828
NmuCI	GTSAC	1 cut(s)	617
NspI	RCATGY	1 cut(s)	509
OliI	CACNNNNGTG	1 cut(s)	747
PaeR7I	CTCGAG	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	801
PkrI	GCNGC	2 cut(s)	6, 741
PleI	GAGTC	2 cut(s)	147, 295
PpsI	GAGTC	2 cut(s)	147, 295
Psp124BI	GAGCTC	1 cut(s)	960
Psp1406I	AACGTT	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	410
PspEI	GGTNACC	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	410
PspN4I	GGNNCC	3 cut(s)	335, 793, 828
PspPI	GGNCC	1 cut(s)	263
PsuI	RGATCY	2 cut(s)	565, 826
RsaI	GTAC	3 cut(s)	335, 848, 876
RsaNI	GTAC	3 cut(s)	334, 847, 875
RseI	CAYNNNNRTG	2 cut(s)	510, 747
SacI	GAGCTC	1 cut(s)	960
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	2 cut(s)	5, 740
Sau3AI	GATC	7 cut(s)	30, 73, 271, 565, 661, 751, 826
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	147, 296
ScrFI	CCNGG	1 cut(s)	412
SduI	GDGCHC	1 cut(s)	960
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	358
Sfr274I	CTCGAG	1 cut(s)	534
SgrAI	CRCCGGYG	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	2 cut(s)	510, 747
SmlI	CTYRAG	2 cut(s)	534, 689
SmoI	CTYRAG	2 cut(s)	534, 689
Sse9I	AATT	9 cut(s)	192, 238, 387, 586, 606, 627, 765, 836, 905
SstI	GAGCTC	1 cut(s)	960
StyD4I	CCNGG	1 cut(s)	410
StyI	CCWWGG	3 cut(s)	329, 795, 859
TaaI	ACNGT	3 cut(s)	395, 761, 846
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	535
TaqII	GACCGA	1 cut(s)	605
TasI	AATT	9 cut(s)	192, 238, 387, 586, 606, 627, 765, 836, 905
TatI	WGTACW	1 cut(s)	846
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TscAI	CASTG	5 cut(s)	313, 585, 664, 754, 787
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	2 cut(s)	4, 739
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	2 cut(s)	412, 1008
TspRI	CASTG	5 cut(s)	313, 585, 664, 754, 787
Van91I	CCANNNNNTGG	1 cut(s)	801
Vha464I	CTTAAG	1 cut(s)	689
XapI	RAATTY	1 cut(s)	586
XceI	RCATGY	1 cut(s)	509
XhoI	CTCGAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.