Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003373

Physical Location & Seq

Genomic Coordinates Forward (+)

3855766 .. 3862697

Gene Structure 6932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG053800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3135 bp

ATGGACCCTCTGGCCGGACCGGTGCCGGAGCATATGCGGTGCACGAGGACGGACGGCCGGCAATGGCGGTGCAAGAGGAGAGTGATGGAGAACATGAAGCTCTGCGAGATTCACTACCTGCAGGGACGGCACCGGCAGTACAGGGAGAAGGTGCCGGAGGAGCTGAAGATTCAGAGGAAGACGCAGACGGCGCCGTGCGAGGATCGCGACGGCGGCGGAGAAGGCGGAGGAATTAGGGCAAAGAAAGTGGAGGATTTGGTGACGCTGCTGAAGAGGAAGAGGGCGGCGGAGGAGGTGGCGCCGGTGAAGATAAAGAAGGCGAAGGTGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGAGGGGGGGAGAAGAAGTGTGAGTTGAATTTGGAGCTGATAAGGATGGTGCTGAAGAGAGAGGTAGAGAAGAGGAACACGCCGCAGAAGAAGAAGAAGAAGATGAGGGTTTTGGTGGAGGAGGAGGGGAGTGAGGGTGAGGAGGGCCTTGATCTGACCAGAGACTTACCTAATGGAAGAATGGCCATTTCGTCTTCTTCGTCGCAGTCTTTGGGGGGCAATGTAGGTTCCAATTCGGGCTCTGATGTTAGGGTTGGGGCCGAATTAGGGCCCCCCGTGGCTACTACTACCCGGCGATGCTTTCGGTCCAAGAACATCGAGCCAATGCCTGTTGGCACAGTGCAGGTTTTGCCATATGGTGATGAGAATGAGGGGAGATTGAGGAAGGGTAAGAGGAAGAGGTGCCATGGGTGTCAGAGAAGTGGAAGTAGTGCTTCTTCCAGCTTGATTAAGTGTTCGAGTTGTAAGAAGCACTTGTTTTGCTTGAGCTGCATCAAAGAAAGGTATTTTGATACTCAAGAAGAAGTCAAAATGGCATGTCCAGTTTGTCGAGGAACTTGCCCCTGTAAGGAATGCTCTGAAAATCAACCGAAAGATGCTGAAAGTAAGGATTATGTGGGGGTTAAAAATAAAGTTGAAATTATATTACACTTTCACTACCTCGTCTGTATGCTTCTCCCTGTGCTGAAACAAATCAACCAAGATCAGAAATTTGAGCTGGAAGCAGAGGCAAAAATGAGAGGGAAAAAGCTCTCCGAAGTTTATATCAAGCAGGCTGAATTTAGCTGCAGTGAGCAAAACAGCTGCAATAAATGCAAAGCTCCCATTGTGGATCTTCACAGAAGCTGCCAAAATTGTTCCTATAACCTTTGTTTGAGCTGTTGTCGAGATCATTTTCAGGGGACTTTACGGGGAGGTATAAATACATTTCTCTCAAAGTGCTCTAATATAAATGATACTTGGGTCTCTGGTAAGGGGAAAGTTCAGAAAAGGCCAATAACTACCCATAAGCAAAATGTCCGGTACCTGTCGTCATTTGCATCAACTAACTGGAATGCTTGTAATGCTGTTGACGGTATATCTTGCCCGCCCAAGGAGTTTGGTGGTTGTGGTGACAGCTTCCTTGATTTGAGATGTTTTTTCCCTTTAAGTTGGATCAAAGAGCTAGAAGTAAGTGCAGAAGAAATAGTTTGCAGCTATGAGTTTCCAGAAACTTCAGACATGTCATTGAGCTGCCCTCTATGTTTGGACACGGACCAGAATGTCGATGGACTTCAACAGTTGCAAGAAGCTGCTTTGAGAGAAAATTCAAATGATAACTATCTATTCTACCCCACGCTTTCAGACGTACATGGTGATAATGTTGAACATTTTCAGAAGCACTGGAGTAAAGGTCATCCTGTTATAGTCCGAGATGTCCTTCGGAGTACGTCAGATTTGAGTTGGGATCCAGTATTCATGTTCTGCACTTATCTTGAGAGGAGCATTGCTCGATATGAAAATAACAAGAATCCACAGGAAGCTATCCACTGCTTGGATTGGTGTGAGGTGGAAATGGGGATCAGGCAGTATTTTATGGGTTCATTGAACGGGCGAACACAAAAAGACATGTGGAGTGAGACCCTGAAATTGAAGGGTTGGCTTTCTTCACAATTATTTAAAGAACAGTTTCCAGCTCATTATGCTGAAATCATCCAAGCTCTACCACTTCAAGAGTACATGAATCCCTCGTCTGGTCTTTTAAATGTTGCTGCAAGGATGCCACAGGAAATCCCAAAACCTGATCTAGGTCCATGTGTTTATATTTCGTATGGGTGCAGTGAGCAGTTTGTACAGGCTGATTCAGTGATAAAGTTGTGTTATGACTCATATGATGTGGTTAACATTTTGGCACATACATCAGATGCCCCTATTTCTGATGAACAAGTTTCTAAGATAAGAAAGTTACTGAAAAGGCACAATCAAAATCAGAGGGAGTCTTCTAGGAATACTTCTGAACAAACTAGAGCAAAAAAAGTGAATGGAAATTCAGCATTGCATAGTCAAAACAAGGAACAAGTGAGGTCACATAATGTGATTGGAGAAGAGATGCATTTACGGAAAAGAATTGCAAGAGAATCTTGCTTCTCTGCTGCAACGCGTGAAGAATGCACTAGGAATCTCAAAGAGAGTAATATGTCACTTGATGGGGAATCTGATGTTGATTCTGAGGCCACGTTGAGTTGCTCTGGGTCTATCAATGGTGATGAAACATCTGAAGATGAGGAGTCACCGGATCTCCTTGACAGCTCAAATGGCCATGAAAAACCCTTTGTAGAGTCATGCACTGCACAGTGGGATGTTTTCCGCAGGCAAGATGTTCCGAAACTTGTAGAATATCTCAGAAGGCACTGTAATGAATTTACTCGTAAATATGACGTTCATAAACATGTTGCTCATCCAATTCTTGATCAGAGTTTCTTTCTAGACTCGATTCACAAAATAAGACTCAAGGAGGAATTTAAAATTGAACCTTGGACTTTTGAGCAACACATTGGAGAAGCTGTCATCATCCCTGCTGGATGCCCGTACCAGATTAGTAGTCCTAAGTCTTGTGTACATGTGGTGCTCGATTTTATATCTCCCGAAAATGTTACCGAGTGCATCCAGTTGACAGATGAAGTTCGCCTGCTTCCAGAAGATCATAAAGCAAAAGTGGACAAGCTGGAGGTGAAGAGAATGGCACTCTATAGTATTAGTTCAGCAATCAAAGAAATACGTGAGCTTACTTGTGCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC WRC

Protein Analysis

1044

Amino Acids

118.75

Weight (kDa)

8.34

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRC	PF08879	9 - 50	2.8e-16	WRC
JmjC	PF02373	892 - 990	3.8e-11	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21430
fragaria_vesca	FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760
malus_domestica	MD05G1326700.v1.1 MD10G1304800.v1.1
prunus_persica	Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1
pyrus_communis	pycom05g30110 pycom10g25720
rosa_chinensis	RchiOBHm_Chr5g0005871
rosa_laevigata	RLG00000016376 RLG00000031332 RLG00000031334 RLG00000031337 RLG00000031345 RLG00000031346 RLG00000031385
rosa_multiflora	Rmu_sc0002694.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070030
rosa_rugosa	Rorug04G0418700 Rorug04G0418800 Rorug04G0418900
rosa_samantha	Rh5AG046200 Rh5BG044900 Rh5CG053800 Rh5DG044700
rosa_wichuraiana	Rw5G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1616
Acc36I	ACCTGC	2 cut(s)	126, 688
Acc65I	GGTACC	1 cut(s)	1377
AccB1I	GGYRCC	7 cut(s)	22, 129, 151, 190, 298, 756, 1377
AccB7I	CCANNNNNTGG	1 cut(s)	1888
AccII	CGCG	2 cut(s)	207, 2494
AclWI	GGATC	7 cut(s)	210, 1194, 1517, 1796, 1809, 1922, 2637
AcoI	YGGCCR	4 cut(s)	12, 55, 537, 2650
AcsI	RAATTY	7 cut(s)	382, 1064, 1133, 1660, 2380, 2753, 2852
AcuI	CTGAAG	5 cut(s)	185, 290, 428, 1554, 2631
AcyI	GRCGYC	2 cut(s)	191, 299
AfaI	GTAC	8 cut(s)	140, 1379, 1704, 1783, 2072, 2187, 2924, 2952
AfiI	CCNNNNNNNGG	7 cut(s)	14, 621, 922, 1447, 1888, 2087, 2141
AflIII	ACRYGT	5 cut(s)	1575, 1962, 2492, 2782, 2953
AgeI	ACCGGT	1 cut(s)	19
AgsI	TTSAA	9 cut(s)	382, 992, 1631, 1665, 1721, 1942, 1987, 2066, 2864
Alw21I	GWGCWC	3 cut(s)	44, 1298, 2964
Alw26I	GTCTC	3 cut(s)	510, 1324, 1967
Alw44I	GTGCAC	1 cut(s)	40
AlwI	GGATC	7 cut(s)	210, 1194, 1517, 1796, 1809, 1922, 2637
AlwNI	CAGNNNCTG	1 cut(s)	1200
AoxI	GGCC	9 cut(s)	12, 55, 499, 537, 612, 623, 1346, 2565, 2650
ApaI	GGGCCC	1 cut(s)	627
ApaLI	GTGCAC	1 cut(s)	40
ApoI	RAATTY	7 cut(s)	382, 1064, 1133, 1660, 2380, 2753, 2852
AsiGI	ACCGGT	1 cut(s)	19
Asp700I	GAANNNNTTC	2 cut(s)	1725, 2022
Asp718I	GGTACC	1 cut(s)	1377
AspLEI	GCGC	2 cut(s)	193, 301
AspS9I	GGNCC	9 cut(s)	4, 17, 499, 612, 623, 624, 660, 1609, 2144
AsuC2I	CCSGG	1 cut(s)	646
AvaII	GGWCC	5 cut(s)	4, 17, 660, 1609, 2144
BaeGI	GKGCMC	2 cut(s)	44, 627
BaeI	ACNNNNGTAYC	2 cut(s)	1302, 1335
BalI	TGGCCA	2 cut(s)	539, 2652
BamHI	GGATCC	1 cut(s)	1801
BanI	GGYRCC	7 cut(s)	22, 129, 151, 190, 298, 756, 1377
BanII	GRGCYC	2 cut(s)	596, 627
BarI	GAAGNNNNNNTAC	2 cut(s)	775, 807
BauI	CACGAG	1 cut(s)	43
BbsI	GAAGAC	3 cut(s)	185, 540, 2325
Bbv12I	GWGCWC	3 cut(s)	44, 1298, 2964
BccI	CCATC	4 cut(s)	79, 394, 1616, 2534
BceAI	ACGGC	5 cut(s)	70, 143, 178, 204, 226
BcgI	CGANNNNNNTGC	2 cut(s)	894, 928
BclI	TGATCA	1 cut(s)	2803
BcnI	CCSGG	1 cut(s)	646
BcoDI	GTCTC	3 cut(s)	510, 1324, 1967
BfaI	CTAG	6 cut(s)	1520, 2141, 2337, 2358, 2508, 2819
BfmI	CTRYAG	3 cut(s)	119, 1141, 3082
BfoI	RGCGCY	2 cut(s)	194, 302
BfuAI	ACCTGC	2 cut(s)	126, 688
Bme1390I	CCNGG	1 cut(s)	646
Bme18I	GGWCC	5 cut(s)	4, 17, 660, 1609, 2144
BmgT120I	GGNCC	9 cut(s)	4, 17, 499, 612, 623, 624, 660, 1609, 2144
BmrFI	CCNGG	1 cut(s)	646
BmsI	GCATC	9 cut(s)	641, 855, 940, 1403, 2103, 2248, 2433, 2906, 3006
BpiI	GAAGAC	3 cut(s)	185, 540, 2325
BplI	GAGNNNNNCTC	4 cut(s)	1576, 1608, 1828, 1860
BpmI	CTGGAG	2 cut(s)	1759, 3080
BpuEI	CTTGAG	4 cut(s)	855, 859, 1850, 2828
BpuMI	CCSGG	1 cut(s)	646
BsaAI	YACGTR	1 cut(s)	3113
BsaBI	GATNNNNATC	1 cut(s)	1674
BsaHI	GRCGYC	2 cut(s)	191, 299
BsaI	GGTCTC	2 cut(s)	1324, 1967
BsaJI	CCNNGG	4 cut(s)	630, 760, 1446, 2867
BsaWI	WCCGGW	3 cut(s)	19, 1374, 2626
Bsc4I	CCNNNNNNNGG	7 cut(s)	14, 621, 922, 1447, 1888, 2087, 2141
Bse118I	RCCGGY	4 cut(s)	19, 57, 132, 301
Bse1I	ACTGG	5 cut(s)	896, 1409, 1742, 1805, 3001
Bse3DI	GCAATG	5 cut(s)	68, 580, 1839, 2387, 3135
Bse8I	GATNNNNATC	1 cut(s)	1674
BseDI	CCNNGG	4 cut(s)	630, 760, 1446, 2867
BseGI	GGATG	9 cut(s)	405, 1750, 2046, 2118, 2698, 2791, 2904, 2921, 2997
BseJI	GATNNNNATC	1 cut(s)	1674
BseLI	CCNNNNNNNGG	7 cut(s)	14, 621, 922, 1447, 1888, 2087, 2141
BseMI	GCAATG	5 cut(s)	68, 580, 1839, 2387, 3135
BseMII	CTCAG	2 cut(s)	2553, 2749
BseNI	ACTGG	5 cut(s)	896, 1409, 1742, 1805, 3001
BseRI	GAGGAG	9 cut(s)	91, 173, 305, 367, 488, 491, 509, 1849, 2633
BseSI	GKGCMC	2 cut(s)	44, 627
BseX3I	CGGCCG	1 cut(s)	55
BsgI	GTGCAG	5 cut(s)	716, 1551, 1804, 2191, 2667
Bsh1236I	CGCG	2 cut(s)	207, 2494
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	9 cut(s)	14, 57, 501, 539, 614, 625, 1348, 2567, 2652
BshNI	GGYRCC	7 cut(s)	22, 129, 151, 190, 298, 756, 1377
BshTI	ACCGGT	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	3 cut(s)	44, 1298, 2964
BslFI	GGGAC	2 cut(s)	138, 1270
BslI	CCNNNNNNNGG	7 cut(s)	14, 621, 922, 1447, 1888, 2087, 2141
BsmAI	GTCTC	3 cut(s)	510, 1324, 1967
BsmFI	GGGAC	2 cut(s)	138, 1270
BsmI	GAATGC	3 cut(s)	932, 1414, 2507
BsnI	GGCC	9 cut(s)	14, 57, 501, 539, 614, 625, 1348, 2567, 2652
Bso31I	GGTCTC	2 cut(s)	1324, 1967
Bsp120I	GGGCCC	1 cut(s)	623
Bsp1286I	GDGCHC	5 cut(s)	44, 596, 627, 1298, 2964
Bsp1407I	TGTACA	2 cut(s)	2185, 2950
Bsp19I	CCATGG	1 cut(s)	760
Bsp68I	TCGCGA	1 cut(s)	207
BspANI	GGCC	9 cut(s)	14, 57, 501, 539, 614, 625, 1348, 2567, 2652
BspCNI	CTCAG	2 cut(s)	2554, 2748
BspFNI	CGCG	2 cut(s)	207, 2494
BspMAI	CTGCAG	2 cut(s)	123, 1145
BspMI	ACCTGC	2 cut(s)	126, 688
BspPI	GGATC	7 cut(s)	210, 1194, 1517, 1796, 1809, 1922, 2637
BspT107I	GGYRCC	7 cut(s)	22, 129, 151, 190, 298, 756, 1377
BspTNI	GGTCTC	2 cut(s)	1324, 1967
BsrDI	GCAATG	5 cut(s)	68, 580, 1839, 2387, 3135
BsrFI	RCCGGY	4 cut(s)	19, 57, 132, 301
BsrGI	TGTACA	2 cut(s)	2185, 2950
BsrI	ACTGG	5 cut(s)	896, 1409, 1742, 1805, 3001
BssAI	RCCGGY	4 cut(s)	19, 57, 132, 301
BssECI	CCNNGG	4 cut(s)	630, 760, 1446, 2867
BssNI	GRCGYC	2 cut(s)	191, 299
BssSI	CACGAG	1 cut(s)	43
BssT1I	CCWWGG	3 cut(s)	760, 1446, 2867
Bst2BI	CACGAG	1 cut(s)	43
Bst4CI	ACNGT	6 cut(s)	694, 1430, 1635, 2022, 2688, 2747
Bst6I	CTCTTC	8 cut(s)	266, 272, 344, 404, 419, 746, 2433, 3062
BstACI	GRCGYC	2 cut(s)	191, 299
BstAPI	GCANNNNNTGC	2 cut(s)	703, 1167
BstAUI	TGTACA	2 cut(s)	2185, 2950
BstBAI	YACGTR	1 cut(s)	3113
BstC8I	GCNNGC	5 cut(s)	59, 1128, 1442, 2705, 3023
BstDEI	CTNAG	4 cut(s)	2286, 2562, 2735, 2940
BstDSI	CCRYGG	2 cut(s)	630, 760
BstENI	CCTNNNNNAGG	1 cut(s)	2139
BstF5I	GGATG	9 cut(s)	405, 1750, 2046, 2118, 2698, 2791, 2904, 2921, 2997
BstFNI	CGCG	2 cut(s)	207, 2494
BstH2I	RGCGCY	2 cut(s)	194, 302
BstHHI	GCGC	2 cut(s)	193, 301
BstMAI	GTCTC	3 cut(s)	510, 1324, 1967
BstMCI	CGRYCG	1 cut(s)	58
BstNSI	RCATGY	5 cut(s)	894, 1579, 1966, 2786, 2957
BstSCI	CCNGG	1 cut(s)	644
BstSFI	CTRYAG	3 cut(s)	119, 1141, 3082
BstSLI	GKGCMC	2 cut(s)	44, 627
BstUI	CGCG	2 cut(s)	207, 2494
BstV2I	GAAGAC	3 cut(s)	185, 540, 2325
BstX2I	RGATCY	3 cut(s)	1186, 1801, 2629
BstYI	RGATCY	3 cut(s)	1186, 1801, 2629
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	9 cut(s)	14, 57, 501, 539, 614, 625, 1348, 2567, 2652
BtgI	CCRYGG	2 cut(s)	630, 760
BtgZI	GCGATG	1 cut(s)	664
BtsCI	GGATG	9 cut(s)	405, 1750, 2046, 2118, 2698, 2791, 2904, 2921, 2997
BtsI	GCAGTG	4 cut(s)	1150, 1882, 2179, 2679
BtsIMutI	CAGTG	9 cut(s)	699, 1150, 1735, 1882, 2179, 2205, 2679, 2693, 2743
BtuMI	TCGCGA	1 cut(s)	207
BveI	ACCTGC	2 cut(s)	126, 688
Cac8I	GCNNGC	5 cut(s)	59, 1128, 1442, 2705, 3023
CaiI	CAGNNNCTG	1 cut(s)	1200
CfoI	GCGC	2 cut(s)	193, 301
Cfr10I	RCCGGY	4 cut(s)	19, 57, 132, 301
Cfr13I	GGNCC	9 cut(s)	4, 17, 499, 612, 623, 624, 660, 1609, 2144
CpoI	CGGWCCG	1 cut(s)	17
CseI	GACGC	2 cut(s)	190, 271
Csp6I	GTAC	8 cut(s)	139, 1378, 1703, 1782, 2071, 2186, 2923, 2951
CspAI	ACCGGT	1 cut(s)	19
CspCI	CAANNNNNGTGG	2 cut(s)	228, 263
CspI	CGGWCCG	1 cut(s)	17
CviQI	GTAC	8 cut(s)	139, 1378, 1703, 1782, 2071, 2186, 2923, 2951
DdeI	CTNAG	4 cut(s)	2286, 2562, 2735, 2940
DinI	GGCGCC	2 cut(s)	192, 300
DraI	TTTAAA	3 cut(s)	2014, 2097, 2857
DrdI	GACNNNNNNGTC	1 cut(s)	1616
DseDI	GACNNNNNNGTC	1 cut(s)	1616
EaeI	YGGCCR	4 cut(s)	12, 55, 537, 2650
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	8 cut(s)	266, 272, 344, 404, 419, 746, 2433, 3062
EarI	CTCTTC	8 cut(s)	266, 272, 344, 404, 419, 746, 2433, 3062
EciI	GGCGGA	3 cut(s)	231, 240, 302
EclXI	CGGCCG	1 cut(s)	55
Eco130I	CCWWGG	3 cut(s)	760, 1446, 2867
Eco24I	GRGCYC	2 cut(s)	596, 627
Eco31I	GGTCTC	2 cut(s)	1324, 1967
Eco47I	GGWCC	5 cut(s)	4, 17, 660, 1609, 2144
Eco52I	CGGCCG	1 cut(s)	55
Eco57I	CTGAAG	5 cut(s)	185, 290, 428, 1554, 2631
EcoNI	CCTNNNNNAGG	1 cut(s)	2139
EcoO109I	RGGNCCY	3 cut(s)	499, 623, 624
EcoT14I	CCWWGG	3 cut(s)	760, 1446, 2867
EcoT22I	ATGCAT	1 cut(s)	2448
EcoT38I	GRGCYC	2 cut(s)	596, 627
EgeI	GGCGCC	2 cut(s)	192, 300
EheI	GGCGCC	2 cut(s)	192, 300
ErhI	CCWWGG	3 cut(s)	760, 1446, 2867
FalI	AAGNNNNNCTT	6 cut(s)	772, 804, 812, 844, 2458, 2490
FaqI	GGGAC	2 cut(s)	138, 1270
FauI	CCCGC	1 cut(s)	1449
FauNDI	CATATG	3 cut(s)	33, 709, 2224
FbaI	TGATCA	1 cut(s)	2803
FokI	GGATG	9 cut(s)	412, 1737, 2033, 2125, 2705, 2778, 2891, 2928, 2984
FriOI	GRGCYC	2 cut(s)	596, 627
FspBI	CTAG	6 cut(s)	1520, 2141, 2337, 2358, 2508, 2819
GlaI	GCGC	2 cut(s)	192, 300
GsuI	CTGGAG	2 cut(s)	1759, 3080
HaeII	RGCGCY	2 cut(s)	194, 302
HaeIII	GGCC	9 cut(s)	14, 57, 501, 539, 614, 625, 1348, 2567, 2652
HgaI	GACGC	2 cut(s)	190, 271
HhaI	GCGC	2 cut(s)	193, 301
Hin1I	GRCGYC	2 cut(s)	191, 299
Hin6I	GCGC	2 cut(s)	191, 299
HinP1I	GCGC	2 cut(s)	191, 299
HincII	GTYRAC	3 cut(s)	1426, 2236, 3006
HindII	GTYRAC	3 cut(s)	1426, 2236, 3006
HpaI	GTTAAC	1 cut(s)	2236
Hpy166II	GTNNAC	6 cut(s)	42, 1426, 2236, 2951, 3006, 3052
Hpy8I	GTNNAC	6 cut(s)	42, 1426, 2236, 2951, 3006, 3052
Hpy99I	CGWCG	2 cut(s)	212, 559
HpyAV	CCTTC	8 cut(s)	142, 215, 310, 316, 733, 1784, 1981, 2733
HpyCH4III	ACNGT	6 cut(s)	694, 1430, 1635, 2022, 2688, 2747
HpyCH4IV	ACGT	5 cut(s)	1701, 1784, 2570, 2772, 3112
HpyF3I	CTNAG	4 cut(s)	2286, 2562, 2735, 2940
HpySE526I	ACGT	5 cut(s)	1701, 1784, 2570, 2772, 3112
Hsp92I	GRCGYC	2 cut(s)	191, 299
HspAI	GCGC	2 cut(s)	191, 299
KasI	GGCGCC	2 cut(s)	190, 298
KpnI	GGTACC	1 cut(s)	1381
KroI	GCCGGC	1 cut(s)	57
KroNI	GCCGGC	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	2803
KspAI	GTTAAC	1 cut(s)	2236
LmnI	GCTCC	5 cut(s)	28, 160, 388, 1180, 1836
LweI	GCATC	9 cut(s)	641, 855, 940, 1403, 2103, 2248, 2433, 2906, 3006
MaeI	CTAG	6 cut(s)	1520, 2141, 2337, 2358, 2508, 2819
MaeII	ACGT	5 cut(s)	1701, 1784, 2570, 2772, 3112
MaeIII	GTNAC	7 cut(s)	259, 1466, 2298, 2418, 2532, 2622, 2986
MflI	RGATCY	3 cut(s)	1186, 1801, 2629
MhlI	GDGCHC	5 cut(s)	44, 596, 627, 1298, 2964
MlsI	TGGCCA	2 cut(s)	539, 2652
MluI	ACGCGT	1 cut(s)	2492
MluNI	TGGCCA	2 cut(s)	539, 2652
Mly113I	GGCGCC	2 cut(s)	191, 299
MlyI	GAGTC	6 cut(s)	2213, 2339, 2630, 2681, 2816, 2835
MmeI	TCCRAC	1 cut(s)	1487
Mox20I	TGGCCA	2 cut(s)	539, 2652
Mph1103I	ATGCAT	1 cut(s)	2448
MroNI	GCCGGC	1 cut(s)	57
MroXI	GAANNNNTTC	2 cut(s)	1725, 2022
MscI	TGGCCA	2 cut(s)	539, 2652
MseI	TTAA	7 cut(s)	804, 978, 1502, 2013, 2096, 2235, 2856
MslI	CAYNNNNRTG	2 cut(s)	2748, 2781
Msp20I	TGGCCA	2 cut(s)	539, 2652
MspA1I	CMGCKG	1 cut(s)	1158
MspR9I	CCNGG	1 cut(s)	646
Mva1269I	GAATGC	3 cut(s)	932, 1414, 2507
MvnI	CGCG	2 cut(s)	207, 2494
NaeI	GCCGGC	1 cut(s)	59
NarI	GGCGCC	2 cut(s)	191, 299
NciI	CCSGG	1 cut(s)	646
NcoI	CCATGG	1 cut(s)	760
NdeI	CATATG	3 cut(s)	33, 709, 2224
NgoMIV	GCCGGC	1 cut(s)	57
NmuCI	GTSAC	5 cut(s)	259, 1466, 2418, 2532, 2622
NruI	TCGCGA	1 cut(s)	207
NsiI	ATGCAT	1 cut(s)	2448
NspI	RCATGY	5 cut(s)	894, 1579, 1966, 2786, 2957
PciI	ACATGT	4 cut(s)	1575, 1962, 2782, 2953
PcsI	WCGNNNNNNNCGW	1 cut(s)	551
PctI	GAATGC	3 cut(s)	932, 1414, 2507
PdiI	GCCGGC	1 cut(s)	59
PdmI	GAANNNNTTC	2 cut(s)	1725, 2022
PflMI	CCANNNNNTGG	1 cut(s)	1888
PinAI	ACCGGT	1 cut(s)	19
PleI	GAGTC	6 cut(s)	2213, 2338, 2629, 2680, 2816, 2835
PluTI	GGCGCC	2 cut(s)	194, 302
PpsI	GAGTC	6 cut(s)	2213, 2338, 2629, 2680, 2816, 2835
Ppu21I	YACGTR	1 cut(s)	3113
PscI	ACATGT	4 cut(s)	1575, 1962, 2782, 2953
PspOMI	GGGCCC	1 cut(s)	623
PspPI	GGNCC	9 cut(s)	4, 17, 499, 612, 623, 624, 660, 1609, 2144
PstI	CTGCAG	2 cut(s)	123, 1145
PstNI	CAGNNNCTG	1 cut(s)	1200
PsuI	RGATCY	3 cut(s)	1186, 1801, 2629
PvuII	CAGCTG	1 cut(s)	1158
RruI	TCGCGA	1 cut(s)	207
RsaI	GTAC	8 cut(s)	140, 1379, 1704, 1783, 2072, 2187, 2924, 2952
RsaNI	GTAC	8 cut(s)	139, 1378, 1703, 1782, 2071, 2186, 2923, 2951
RseI	CAYNNNNRTG	2 cut(s)	2748, 2781
Rsr2I	CGGWCCG	1 cut(s)	17
RsrII	CGGWCCG	1 cut(s)	17
SaqAI	TTAA	7 cut(s)	804, 978, 1502, 2013, 2096, 2235, 2856
Sau96I	GGNCC	9 cut(s)	4, 17, 499, 612, 623, 624, 660, 1609, 2144
SbfI	CCTGCAGG	1 cut(s)	123
SchI	GAGTC	6 cut(s)	2213, 2339, 2630, 2681, 2816, 2835
ScrFI	CCNGG	1 cut(s)	646
SdaI	CCTGCAGG	1 cut(s)	123
SduI	GDGCHC	5 cut(s)	44, 596, 627, 1298, 2964
SfaNI	GCATC	9 cut(s)	641, 855, 940, 1403, 2103, 2248, 2433, 2906, 3006
SfcI	CTRYAG	3 cut(s)	119, 1141, 3082
SfoI	GGCGCC	2 cut(s)	192, 300
SgrAI	CRCCGGYG	1 cut(s)	301
SinI	GGWCC	5 cut(s)	4, 17, 660, 1609, 2144
SmiMI	CAYNNNNRTG	2 cut(s)	2748, 2781
SmlI	CTYRAG	4 cut(s)	838, 870, 1829, 2843
SmoI	CTYRAG	4 cut(s)	838, 870, 1829, 2843
Sse8387I	CCTGCAGG	1 cut(s)	123
SspDI	GGCGCC	2 cut(s)	190, 298
SspMI	CTAG	6 cut(s)	1520, 2141, 2337, 2358, 2508, 2819
StyD4I	CCNGG	1 cut(s)	644
StyI	CCWWGG	3 cut(s)	760, 1446, 2867
TaaI	ACNGT	6 cut(s)	694, 1430, 1635, 2022, 2688, 2747
TaiI	ACGT	5 cut(s)	1704, 1787, 2573, 2775, 3115
TaqI	TCGA	8 cut(s)	672, 812, 904, 1240, 1620, 1846, 2825, 2964
TaqII	GACCGA	1 cut(s)	648
TatI	WGTACW	4 cut(s)	138, 2070, 2185, 2950
TauI	GCSGC	3 cut(s)	216, 287, 439
Tru1I	TTAA	7 cut(s)	804, 978, 1502, 2013, 2096, 2235, 2856
Tru9I	TTAA	7 cut(s)	804, 978, 1502, 2013, 2096, 2235, 2856
TscAI	CASTG	9 cut(s)	699, 1150, 1742, 1889, 2179, 2205, 2686, 2693, 2750
TseFI	GTSAC	5 cut(s)	259, 1466, 2418, 2532, 2622
Tsp45I	GTSAC	5 cut(s)	259, 1466, 2418, 2532, 2622
TspGWI	ACGGA	3 cut(s)	65, 1622, 2467
TspRI	CASTG	9 cut(s)	699, 1150, 1742, 1889, 2179, 2205, 2686, 2693, 2750
Van91I	CCANNNNNTGG	1 cut(s)	1888
VneI	GTGCAC	1 cut(s)	40
VpaK11BI	GGWCC	5 cut(s)	4, 17, 660, 1609, 2144
XagI	CCTNNNNNAGG	1 cut(s)	2139
XapI	RAATTY	7 cut(s)	382, 1064, 1133, 1660, 2380, 2753, 2852
XbaI	TCTAGA	1 cut(s)	2818
XceI	RCATGY	5 cut(s)	894, 1579, 1966, 2786, 2957
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1619
XmnI	GAANNNNTTC	2 cut(s)	1725, 2022
XspI	CTAG	6 cut(s)	1520, 2141, 2337, 2358, 2508, 2819
Zsp2I	ATGCAT	1 cut(s)	2448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.