Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

57938837 .. 57940117

Gene Structure 1281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0418700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCAGCTTTTATCCTTCCGACGTCAGTTCATCCTCCTCACGGCTTGTCTCTCACTTTGTTTGGTTGCTAAAGCTGAGTTTCAACGTTTGCAACAGCAAACAAACGACGAAGGGTCTCTGAAATTCTTCGTTGTTGGAGACTGGGGCAGACGAGGACTCTACAACCAATCTCAAGTTGCAGCCCAGATGGGATTAATCGCGAACAAAGAAAACATAGACATTGTTTTCTCCACCGGTGACAATTTCTACGACGATGGTTTGAAAGGCGTTGATGATCCAGCTTTTAAAGAATCATTCTCCAACATCTACAATGCCCAAAGCTTAAAGAAACCATATTGGTTCAGTGTATTGGGTAACCATGACTATCGTGGTAACGTTCTAGCACAACTGAATCCACTCCTCAAACGCATTGCACTACAAGAAAAAACATGTTTAACAACATGCAATTCACGTTGTCAATCACTTTTGACAACGTTTGGCGCATGTTGTAGATGCCAGAGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC WRC

Protein Analysis

168

Amino Acids

18.99

Weight (kDa)

8.64

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	40 - 129	1.2e-07	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	25
AccII	CGCG	1 cut(s)	200
AclI	AACGTT	3 cut(s)	85, 375, 473
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	428
AgeI	ACCGGT	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	83, 262
AhdI	GACNNNNNGTC	1 cut(s)	112
AluBI	AGCT	4 cut(s)	7, 74, 281, 321
AluI	AGCT	4 cut(s)	7, 74, 281, 321
Alw26I	GTCTC	3 cut(s)	53, 120, 132
AlwI	GGATC	1 cut(s)	269
ApeKI	GCWGC	2 cut(s)	4, 179
ApoI	RAATTY	1 cut(s)	122
AseI	ATTAAT	1 cut(s)	194
AsiGI	ACCGGT	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	482
AsuHPI	GGTGA	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	16, 191
BccI	CCATC	2 cut(s)	181, 248
BceAI	ACGGC	1 cut(s)	57
BcoDI	GTCTC	3 cut(s)	53, 120, 132
BfaI	CTAG	1 cut(s)	380
BisI	GCNGC	2 cut(s)	5, 180
BlsI	GCNGC	2 cut(s)	6, 181
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	482
BmuI	ACTGGG	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	408
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	2 cut(s)	26, 389
BseXI	GCAGC	2 cut(s)	16, 191
Bsh1236I	CGCG	1 cut(s)	200
BshTI	ACCGGT	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	3 cut(s)	53, 120, 132
Bso31I	GGTCTC	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	274
Bsp68I	TCGCGA	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	200
BspPI	GGATC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	408
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	233
BssMI	GATC	1 cut(s)	274
BssNI	GRCGYC	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	3 cut(s)	53, 120, 132
BstMBI	GATC	1 cut(s)	274
BstNSI	RCATGY	3 cut(s)	432, 444, 486
BstPI	GGTNACC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	16, 191
BtsCI	GGATG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	349
BtuMI	TCGCGA	1 cut(s)	200
CfoI	GCGC	1 cut(s)	482
Cfr10I	RCCGGY	1 cut(s)	233
CspAI	ACCGGT	1 cut(s)	233
CviAII	CATG	4 cut(s)	359, 429, 441, 483
CviJI	RGCY	6 cut(s)	7, 44, 74, 182, 281, 321
CviKI_1	RGCY	6 cut(s)	7, 44, 74, 182, 281, 321
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DraI	TTTAAA	1 cut(s)	286
DriI	GACNNNNNGTC	1 cut(s)	112
Eam1105I	GACNNNNNGTC	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	353
FaeI	CATG	4 cut(s)	362, 432, 444, 486
FaiI	YATR	6 cut(s)	215, 334, 360, 430, 442, 484
FatI	CATG	4 cut(s)	358, 428, 440, 482
Fnu4HI	GCNGC	2 cut(s)	5, 180
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	5, 180
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	2 cut(s)	5, 180
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	482
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	4 cut(s)	362, 432, 444, 486
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	4 cut(s)	156, 290, 391, 499
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	248
Hpy188I	TCNGA	2 cut(s)	20, 120
Hpy188III	TCNNGA	1 cut(s)	199
Hpy99I	CGWCG	3 cut(s)	24, 110, 254
HpyAV	CCTTC	2 cut(s)	25, 104
HpyCH4IV	ACGT	5 cut(s)	22, 85, 375, 451, 473
HpyCH4V	TGCA	5 cut(s)	4, 91, 179, 413, 444
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	5 cut(s)	22, 85, 375, 451, 473
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	4 cut(s)	362, 432, 444, 486
HspAI	GCGC	1 cut(s)	480
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	4 cut(s)	127, 197, 247, 291
Lsp1109I	GCAGC	2 cut(s)	16, 191
LweI	GCATC	1 cut(s)	482
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	5 cut(s)	22, 85, 375, 451, 473
MaeIII	GTNAC	3 cut(s)	236, 353, 371
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	1 cut(s)	118
MluCI	AATT	3 cut(s)	122, 241, 445
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	3 cut(s)	43, 115, 324
MnlI	CCTC	4 cut(s)	44, 47, 146, 410
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	5 cut(s)	194, 285, 323, 434, 505
MspI	CCGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	200
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	4 cut(s)	362, 432, 444, 486
NmuCI	GTSAC	1 cut(s)	236
NruI	TCGCGA	1 cut(s)	200
NspI	RCATGY	3 cut(s)	432, 444, 486
PciI	ACATGT	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	290, 391
PinAI	ACCGGT	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	6, 181
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PscI	ACATGT	1 cut(s)	428
PshBI	ATTAAT	1 cut(s)	194
Psp1406I	AACGTT	3 cut(s)	85, 375, 473
PspEI	GGTNACC	1 cut(s)	353
RruI	TCGCGA	1 cut(s)	200
SaqAI	TTAA	5 cut(s)	194, 285, 323, 434, 505
SatI	GCNGC	2 cut(s)	5, 180
Sau3AI	GATC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	150
SetI	ASST	9 cut(s)	9, 25, 76, 88, 283, 323, 378, 454, 476
SfaNI	GCATC	1 cut(s)	482
SgrAI	CRCCGGYG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	3 cut(s)	122, 241, 445
SspMI	CTAG	1 cut(s)	380
TaiI	ACGT	5 cut(s)	25, 88, 378, 454, 476
TasI	AATT	3 cut(s)	122, 241, 445
TfiI	GAWTC	2 cut(s)	290, 391
Tru1I	TTAA	5 cut(s)	194, 285, 323, 434, 505
Tru9I	TTAA	5 cut(s)	194, 285, 323, 434, 505
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	4, 179
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	1 cut(s)	349
VspI	ATTAAT	1 cut(s)	194
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	3 cut(s)	432, 444, 486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	380
ZraI	GACGTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.