Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Reverse (-)

2632524 .. 2635143

Gene Structure 2620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G05120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCGGATAGATATGAGAACCAACCTCCTGAGAAGCTTCAGGGGAAGTATCAAGCAATGGTTGTTTGCTGTATTCTTGGAATTGGATCTCTCGTTTCTTGGAACAGTATGCTCACTATAGCAGATTACTACTACAAAGTTTTTCCGGATTATCATCCTTCAAGGGTACTCACACTTGTATACCAACCGTTTGCGCTTGGAACAATCTTGATTCTCGCATACCACGAATCGAAAATCAATACTCGAAAACGTAACCTCATTGGTTACATTCTATTCACAATATCCACATTCTTGCTCATAGTTTTGGATTTGGCAACAAAAGGACGTGGTGGAATCGGTCCTTATATCGGTTTATGCGCTGTTGTTGCTTCTTTTGGCCTCGCGGATGCTACAGTTCAAGGAGGAATGATCGGTGATTTATCATTGATGTGCCCTGAACTAGTTCAGTCATTCATGGGAGGTTTGGCTGTATCTGGTGCGCTAACATCAGCACTTCGGCTAATAACTAAAGCAGCCTTTGAGAAAACAAACGACGGTCCACGAAAAGGAGCAATGATGTTCTTAGCTATCTCCACATGCATAGAGTTACTCTGTGTGTTTCTATATGCTTATGTGTTCCCGAAACTCCCGATTGTTAAGTATTACCGAAGAAAAGCCGCTTCTGAAGGATCCAAAACTGTTTCTGCTGATCTTGCTGCTGCTGGTATCCAAAATCAATCAGACTTGACTGATGATGATTCCAAGAATCAAAGGCTAAGCAACAAAGAGCTATTGATTCAAAACATAGACTATGCAGTGAATTTATTCCTCATCTACGTTTGCACGTTATCCATTTTCCCGGGGTTTTTATATGAAAACACAGGACAACACGGGCTAGGCGATTGGTACGCACTTGTCTTAGTAGCGATGTACAATTGTTGGGACTTGGTCGGGAGGTACACACCACTGGTGAAATGGCTCAAGATTGAGAATAGAAAGTTGATCACAATCGCGGTATTGTCACGTTATCTTCTCATTCCGGCGTTCTACTTCACTGCGAAATATGGTGATCAGGGATGGATGATTATGCTCATTTCTGTTTTGGGGTTGACTAATGGACATCTCACTGTTTGCATTATGACTATAGCTCCTAAAGGATACAAGGGTCCGGAGCAGAATGCGTTAGGGAACTTACTGGTGATATTTCTGTTAGGAGGGATATTTGCAGGAGTTGCTTTGGATTGGTTATGGCTTATTGGTAAGAAGAATGCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

418

Amino Acids

46.21

Weight (kDa)

8.86

Isoelectric Point (pI)

29.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	121 - 410	8.1e-34	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	2 cut(s)	383, 992
AccIII	TCCGGA	2 cut(s)	145, 1147
AciI	CCGC	4 cut(s)	5, 383, 657, 992
AclWI	GGATC	3 cut(s)	94, 663, 676
AcsI	RAATTY	1 cut(s)	799
AcuI	CTGAAG	2 cut(s)	23, 684
AfaI	GTAC	4 cut(s)	168, 887, 911, 938
AfiI	CCNNNNNNNGG	2 cut(s)	347, 545
AgsI	TTSAA	3 cut(s)	162, 398, 779
AhlI	ACTAGT	1 cut(s)	439
AjiI	CACGTC	1 cut(s)	326
AluBI	AGCT	4 cut(s)	37, 566, 769, 1127
AluI	AGCT	4 cut(s)	37, 566, 769, 1127
AlwI	GGATC	3 cut(s)	94, 663, 676
Ama87I	CYCGRG	1 cut(s)	838
Aor13HI	TCCGGA	2 cut(s)	145, 1147
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	3 cut(s)	512, 695, 698
ApoI	RAATTY	1 cut(s)	799
Asp700I	GAANNNNTTC	2 cut(s)	441, 803
AspLEI	GCGC	3 cut(s)	196, 359, 481
AspS9I	GGNCC	3 cut(s)	338, 536, 1145
AsuC2I	CCSGG	2 cut(s)	839, 840
AsuHPI	GGTGA	4 cut(s)	425, 961, 1058, 1189
AvaI	CYCGRG	1 cut(s)	838
AvaII	GGWCC	3 cut(s)	338, 536, 1145
BaeGI	GKGCMC	1 cut(s)	434
BaeI	ACNNNNGTAYC	2 cut(s)	1129, 1162
BamHI	GGATCC	1 cut(s)	668
BbvI	GCAGC	3 cut(s)	524, 682, 685
BccI	CCATC	1 cut(s)	1050
BciVI	GTATCC	2 cut(s)	716, 1130
BclI	TGATCA	2 cut(s)	981, 1048
BcnI	CCSGG	2 cut(s)	839, 840
BcuI	ACTAGT	1 cut(s)	439
BfaI	CTAG	2 cut(s)	440, 875
BfmI	CTRYAG	3 cut(s)	117, 390, 1122
BfuI	GTATCC	2 cut(s)	716, 1130
BisI	GCNGC	4 cut(s)	513, 657, 696, 699
BlpI	GCTNAGC	1 cut(s)	755
BlsI	GCNGC	4 cut(s)	514, 658, 697, 700
Bme1390I	CCNGG	2 cut(s)	839, 840
Bme18I	GGWCC	3 cut(s)	338, 536, 1145
BmeT110I	CYCGRG	1 cut(s)	838
BmgBI	CACGTC	1 cut(s)	326
BmgT120I	GGNCC	3 cut(s)	338, 536, 1145
BmiI	GGNNCC	2 cut(s)	670, 1146
BmrFI	CCNGG	2 cut(s)	839, 840
BmsI	GCATC	1 cut(s)	376
Bpu1102I	GCTNAGC	1 cut(s)	755
BpuEI	CTTGAG	1 cut(s)	944
BpuMI	CCSGG	2 cut(s)	839, 840
BsaBI	GATNNNNATC	2 cut(s)	153, 986
BsaJI	CCNNGG	2 cut(s)	838, 839
BsaWI	WCCGGW	2 cut(s)	145, 1147
BsaXI	ACNNNNNCTCC	2 cut(s)	1111, 1141
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 545
Bse1I	ACTGG	2 cut(s)	951, 1179
Bse3DI	GCAATG	2 cut(s)	63, 558
Bse8I	GATNNNNATC	2 cut(s)	153, 986
BseAI	TCCGGA	2 cut(s)	145, 1147
BseDI	CCNNGG	2 cut(s)	838, 839
BseGI	GGATG	4 cut(s)	154, 391, 1061, 1065
BseJI	GATNNNNATC	2 cut(s)	153, 986
BseLI	CCNNNNNNNGG	2 cut(s)	347, 545
BseMI	GCAATG	2 cut(s)	63, 558
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	951, 1179
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	3 cut(s)	524, 682, 685
Bsh1236I	CGCG	2 cut(s)	383, 992
BshFI	GGCC	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	838
BsiSI	CCGG	4 cut(s)	146, 839, 1019, 1148
BslFI	GGGAC	1 cut(s)	935
BslI	CCNNNNNNNGG	2 cut(s)	347, 545
BsmFI	GGGAC	1 cut(s)	935
BsmI	GAATGC	2 cut(s)	1162, 1252
BsnI	GGCC	1 cut(s)	378
BsoBI	CYCGRG	1 cut(s)	838
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp13I	TCCGGA	2 cut(s)	145, 1147
Bsp1407I	TGTACA	1 cut(s)	909
Bsp143I	GATC	6 cut(s)	86, 408, 668, 688, 981, 1048
Bsp1720I	GCTNAGC	1 cut(s)	755
BspACI	CCGC	4 cut(s)	5, 383, 657, 992
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	22
BspEI	TCCGGA	2 cut(s)	145, 1147
BspFNI	CGCG	2 cut(s)	383, 992
BspLI	GGNNCC	2 cut(s)	670, 1146
BspPI	GGATC	3 cut(s)	94, 663, 676
BsrDI	GCAATG	2 cut(s)	63, 558
BsrGI	TGTACA	1 cut(s)	909
BsrI	ACTGG	2 cut(s)	951, 1179
BssECI	CCNNGG	2 cut(s)	838, 839
BssMI	GATC	6 cut(s)	86, 408, 668, 688, 981, 1048
BssNAI	GTATAC	1 cut(s)	181
Bst1107I	GTATAC	1 cut(s)	181
Bst4CI	ACNGT	6 cut(s)	107, 189, 394, 536, 679, 1108
BstAPI	GCANNNNNTGC	1 cut(s)	1211
BstAUI	TGTACA	1 cut(s)	909
BstDEI	CTNAG	4 cut(s)	30, 562, 755, 898
BstF5I	GGATG	4 cut(s)	154, 391, 1061, 1065
BstFNI	CGCG	2 cut(s)	383, 992
BstHHI	GCGC	3 cut(s)	196, 359, 481
BstKTI	GATC	6 cut(s)	89, 411, 671, 691, 984, 1051
BstMBI	GATC	6 cut(s)	86, 408, 668, 688, 981, 1048
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 692, 1211
BstNSI	RCATGY	1 cut(s)	579
BstSCI	CCNGG	2 cut(s)	837, 838
BstSFI	CTRYAG	3 cut(s)	117, 390, 1122
BstSLI	GKGCMC	1 cut(s)	434
BstUI	CGCG	2 cut(s)	383, 992
BstV1I	GCAGC	3 cut(s)	524, 682, 685
BstX2I	RGATCY	2 cut(s)	86, 668
BstYI	RGATCY	2 cut(s)	86, 668
BstZ17I	GTATAC	1 cut(s)	181
BsuI	GTATCC	2 cut(s)	716, 1130
BsuRI	GGCC	1 cut(s)	378
BtgZI	GCGATG	1 cut(s)	920
BtrI	CACGTC	1 cut(s)	326
BtsCI	GGATG	4 cut(s)	154, 391, 1061, 1065
BtsI	GCAGTG	2 cut(s)	801, 1032
BtsIMutI	CAGTG	4 cut(s)	801, 944, 1032, 1104
CfoI	GCGC	3 cut(s)	196, 359, 481
Cfr13I	GGNCC	3 cut(s)	338, 536, 1145
Cfr9I	CCCGGG	1 cut(s)	838
Csp6I	GTAC	4 cut(s)	167, 886, 910, 937
CviAII	CATG	2 cut(s)	454, 576
CviQI	GTAC	4 cut(s)	167, 886, 910, 937
DdeI	CTNAG	4 cut(s)	30, 562, 755, 898
DpnI	GATC	6 cut(s)	88, 410, 670, 690, 983, 1050
DpnII	GATC	6 cut(s)	86, 408, 668, 688, 981, 1048
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	3 cut(s)	338, 536, 1145
Eco57I	CTGAAG	2 cut(s)	23, 684
Eco88I	CYCGRG	1 cut(s)	838
EcoT22I	ATGCAT	1 cut(s)	581
FaeI	CATG	2 cut(s)	457, 579
FalI	AAGNNNNNCTT	1 cut(s)	1235
FaqI	GGGAC	1 cut(s)	935
FatI	CATG	2 cut(s)	453, 575
FbaI	TGATCA	2 cut(s)	981, 1048
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	4 cut(s)	513, 657, 696, 699
FokI	GGATG	4 cut(s)	141, 398, 1068, 1072
Fsp4HI	GCNGC	4 cut(s)	513, 657, 696, 699
FspBI	CTAG	2 cut(s)	440, 875
GlaI	GCGC	3 cut(s)	195, 358, 480
GluI	GCNGC	4 cut(s)	513, 657, 696, 699
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	4 cut(s)	146, 839, 1019, 1148
HhaI	GCGC	3 cut(s)	196, 359, 481
Hin1II	CATG	2 cut(s)	457, 579
Hin6I	GCGC	3 cut(s)	194, 357, 479
HinP1I	GCGC	3 cut(s)	194, 357, 479
HincII	GTYRAC	1 cut(s)	1089
HindII	GTYRAC	1 cut(s)	1089
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	6 cut(s)	211, 227, 333, 737, 745, 775
HpaII	CCGG	4 cut(s)	146, 839, 1019, 1148
HphI	GGTGA	4 cut(s)	425, 961, 1058, 1189
Hpy166II	GTNNAC	4 cut(s)	181, 539, 939, 1089
Hpy188I	TCNGA	2 cut(s)	664, 721
Hpy188III	TCNNGA	8 cut(s)	29, 146, 208, 619, 628, 931, 961, 1148
Hpy8I	GTNNAC	4 cut(s)	181, 539, 939, 1089
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	2 cut(s)	168, 659
HpyCH4III	ACNGT	6 cut(s)	107, 189, 394, 536, 679, 1108
HpyCH4IV	ACGT	5 cut(s)	250, 325, 816, 824, 1003
HpyCH4V	TGCA	5 cut(s)	579, 794, 822, 1113, 1205
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 692, 1211
HpyF3I	CTNAG	4 cut(s)	30, 562, 755, 898
HpySE526I	ACGT	5 cut(s)	250, 325, 816, 824, 1003
Hsp92II	CATG	2 cut(s)	457, 579
HspAI	GCGC	3 cut(s)	194, 357, 479
Kpn2I	TCCGGA	2 cut(s)	145, 1147
Ksp22I	TGATCA	2 cut(s)	981, 1048
Kzo9I	GATC	6 cut(s)	86, 408, 668, 688, 981, 1048
LmnI	GCTCC	3 cut(s)	548, 1132, 1150
Lsp1109I	GCAGC	3 cut(s)	524, 682, 685
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	440, 875
MaeII	ACGT	5 cut(s)	250, 325, 816, 824, 1003
MaeIII	GTNAC	4 cut(s)	251, 263, 585, 999
MalI	GATC	6 cut(s)	88, 410, 670, 690, 983, 1050
MboI	GATC	6 cut(s)	86, 408, 668, 688, 981, 1048
MboII	GAAGA	3 cut(s)	660, 1001, 1255
MfeI	CAATTG	1 cut(s)	913
MflI	RGATCY	2 cut(s)	86, 668
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	3 cut(s)	81, 799, 913
MnlI	CCTC	8 cut(s)	36, 266, 389, 395, 452, 818, 927, 1187
Mph1103I	ATGCAT	1 cut(s)	581
MroI	TCCGGA	2 cut(s)	145, 1147
MroXI	GAANNNNTTC	2 cut(s)	441, 803
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	1 cut(s)	427
MspI	CCGG	4 cut(s)	146, 839, 1019, 1148
MspR9I	CCNGG	2 cut(s)	839, 840
MunI	CAATTG	1 cut(s)	913
Mva1269I	GAATGC	2 cut(s)	1162, 1252
MvnI	CGCG	2 cut(s)	383, 992
MwoI	GCNNNNNNNGC	3 cut(s)	365, 692, 1211
NciI	CCSGG	2 cut(s)	839, 840
NdeII	GATC	6 cut(s)	86, 408, 668, 688, 981, 1048
NlaIII	CATG	2 cut(s)	457, 579
NlaIV	GGNNCC	2 cut(s)	670, 1146
NmuCI	GTSAC	1 cut(s)	999
NsiI	ATGCAT	1 cut(s)	581
NspI	RCATGY	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 876
PctI	GAATGC	2 cut(s)	1162, 1252
PdmI	GAANNNNTTC	2 cut(s)	441, 803
PfeI	GAWTC	6 cut(s)	211, 227, 333, 737, 745, 775
PflFI	GACNNNGTC	1 cut(s)	926
PkrI	GCNGC	4 cut(s)	514, 658, 697, 700
PspN4I	GGNNCC	2 cut(s)	670, 1146
PspPI	GGNCC	3 cut(s)	338, 536, 1145
PsuI	RGATCY	2 cut(s)	86, 668
PsyI	GACNNNGTC	1 cut(s)	926
RsaI	GTAC	4 cut(s)	168, 887, 911, 938
RsaNI	GTAC	4 cut(s)	167, 886, 910, 937
RseI	CAYNNNNRTG	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	4 cut(s)	513, 657, 696, 699
Sau3AI	GATC	6 cut(s)	86, 408, 668, 688, 981, 1048
Sau96I	GGNCC	3 cut(s)	338, 536, 1145
ScrFI	CCNGG	2 cut(s)	839, 840
SduI	GDGCHC	1 cut(s)	434
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	3 cut(s)	117, 390, 1122
SinI	GGWCC	3 cut(s)	338, 536, 1145
SmaI	CCCGGG	1 cut(s)	840
SmiMI	CAYNNNNRTG	1 cut(s)	427
SmlI	CTYRAG	1 cut(s)	959
SmoI	CTYRAG	1 cut(s)	959
SpeI	ACTAGT	1 cut(s)	439
Sse9I	AATT	3 cut(s)	81, 799, 913
SsiI	CCGC	4 cut(s)	5, 383, 657, 992
SspMI	CTAG	2 cut(s)	440, 875
StyD4I	CCNGG	2 cut(s)	837, 838
TaaI	ACNGT	6 cut(s)	107, 189, 394, 536, 679, 1108
TaiI	ACGT	5 cut(s)	253, 328, 819, 827, 1006
TaqI	TCGA	2 cut(s)	230, 244
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	3 cut(s)	81, 799, 913
TatI	WGTACW	1 cut(s)	909
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	6 cut(s)	211, 227, 333, 737, 745, 775
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	4 cut(s)	801, 951, 1039, 1111
TseFI	GTSAC	1 cut(s)	999
TseI	GCWGC	3 cut(s)	512, 695, 698
Tsp45I	GTSAC	1 cut(s)	999
TspDTI	ATGAA	2 cut(s)	442, 867
TspMI	CCCGGG	1 cut(s)	838
TspRI	CASTG	4 cut(s)	801, 951, 1039, 1111
Tth111I	GACNNNGTC	1 cut(s)	926
VpaK11BI	GGWCC	3 cut(s)	338, 536, 1145
XapI	RAATTY	1 cut(s)	799
XceI	RCATGY	1 cut(s)	579
XcmI	CCANNNNNNNNNTGG	1 cut(s)	951
XmaI	CCCGGG	1 cut(s)	838
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	2 cut(s)	441, 803
XspI	CTAG	2 cut(s)	440, 875
Zsp2I	ATGCAT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.