Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

3663580 .. 3667050

Gene Structure 3471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG044300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGAATACTAGCATACAAGGAAGCAACCGTTAATACCAGAAAGAGGATCTTAATTGGATACACTCTCTTCTTTCTTGGTACCTTGATGATGATAGTTGTGGATGTTGCTACGTCTGGCAGAGGAGGAATTGGACCTTATATTGGTATATGTGCAATGGTTGGTGTATTTGGGGTTGCAGATGGTCATGTTCAAGGTGGAGTCATTGGTGATTTATCCTTGATGCGCCCTGAGTTCATCCAGTCCTTCTTTGCTGGCTTGGCTGCATCAGGTGCTCTAACCTCTGCCTTGAGGCTGATGACAAGGGCTGCCTTTGAGAAGTATCATGATGGTCTTCGCAAGGGAACAATGATGTTCTTGGCCCTTTCCACATTCATCGAGTTCCTGTGTATATTTCTGTATGCAACTTACTTCTCTAAGTTACCTATAGTAAAGTACTACCGCTCAAAGGCAGCCTCGGAAGGCTCCAAAACTGTTATGGCTGATCTTGCTGCCGGTGGCATTCAAACACAAGCAGACATAGAAGCAATTCCACAACGATTGACCACTAAGCAATTATTCATTCAGAATTATGATTATGCACTTGGCTTGTTTCTGATATATGCATTGACATTATCAATCTTCCCTGGTTTCCTTTTTGAAAACACCGGAAAACACCAATTGGGCACATGGTATCCCCTTGTTCTGATCGCAATGTACAACGTGTTGGATTTTATATCGAGATACACACCTCTTATACCATGCTTGAAGATTGAAAACAGAAAGGGCCTCATGGTTGCAATTGGACTGCGTTTTCTCTTCGTTCCAGCGTTCTACTTCACTGCAAAATACGCTGACCAAGGTTGGATGATCCTGCTCACCTCAATCTTGGGTTTTACAAATGGTCATCTTACTGTTTGTCTCATGACAGTGGCACCAAAAGGTTACACGGGACCTGAGCAGAATGCTTTGGGCAATGTCCTTGCTTTCTGCCTTATGTGCGGCATATTTGCCGGGGTTTTACTCGATTGGTTATGGCTCATCGGCAACGGCAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

346

Amino Acids

38.05

Weight (kDa)

9.11

Isoelectric Point (pI)

27.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	52 - 339	9.1e-29	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	80
AccB1I	GGYRCC	2 cut(s)	80, 913
AccBSI	CCGCTC	1 cut(s)	444
AciI	CCGC	2 cut(s)	442, 981
AclWI	GGATC	2 cut(s)	56, 844
AcsI	RAATTY	1 cut(s)	1034
AfaI	GTAC	3 cut(s)	82, 437, 698
AfiI	CCNNNNNNNGG	3 cut(s)	45, 143, 448
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	5 cut(s)	194, 506, 641, 748, 755
AjnI	CCWGG	1 cut(s)	625
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	905
AlwI	GGATC	2 cut(s)	56, 844
AoxI	GGCC	2 cut(s)	360, 766
ApeKI	GCWGC	4 cut(s)	263, 308, 452, 491
ApoI	RAATTY	1 cut(s)	1034
Asp700I	GAANNNNTTC	1 cut(s)	528
Asp718I	GGTACC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	4 cut(s)	134, 361, 766, 932
AsuC2I	CCSGG	1 cut(s)	994
AsuHPI	GGTGA	2 cut(s)	221, 850
AvaII	GGWCC	2 cut(s)	134, 932
BaeGI	GKGCMC	1 cut(s)	668
BanI	GGYRCC	2 cut(s)	80, 913
BbsI	GAAGAC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	4 cut(s)	250, 295, 464, 478
BccI	CCATC	2 cut(s)	176, 323
BciT130I	CCWGG	1 cut(s)	627
BciVI	GTATCC	2 cut(s)	53, 684
BcnI	CCSGG	1 cut(s)	994
BcoDI	GTCTC	1 cut(s)	905
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	426
BfuI	GTATCC	2 cut(s)	53, 684
BisI	GCNGC	5 cut(s)	264, 309, 453, 492, 982
BlsI	GCNGC	5 cut(s)	265, 310, 454, 493, 983
BmcAI	AGTACT	1 cut(s)	437
Bme1390I	CCNGG	2 cut(s)	627, 994
Bme18I	GGWCC	2 cut(s)	134, 932
BmgT120I	GGNCC	4 cut(s)	134, 361, 766, 932
BmiI	GGNNCC	4 cut(s)	82, 466, 915, 933
BmrFI	CCNGG	2 cut(s)	627, 994
BmsI	GCATC	2 cut(s)	213, 275
BpiI	GAAGAC	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	936
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	994
BsaJI	CCNNGG	4 cut(s)	456, 625, 838, 993
BsaWI	WCCGGW	1 cut(s)	647
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 143, 448
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	3 cut(s)	162, 699, 961
BseBI	CCWGG	1 cut(s)	627
BseDI	CCNNGG	4 cut(s)	456, 625, 838, 993
BseGI	GGATG	3 cut(s)	109, 237, 852
BseLI	CCNNNNNNNGG	3 cut(s)	45, 143, 448
BseMI	GCAATG	3 cut(s)	162, 699, 961
BseMII	CTCAG	2 cut(s)	222, 927
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	668
BseXI	GCAGC	4 cut(s)	250, 295, 464, 478
BshFI	GGCC	2 cut(s)	362, 768
BshNI	GGYRCC	2 cut(s)	80, 913
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	495, 648, 993
BslFI	GGGAC	1 cut(s)	945
BslI	CCNNNNNNNGG	3 cut(s)	45, 143, 448
BsmAI	GTCTC	1 cut(s)	905
BsmFI	GGGAC	1 cut(s)	945
BsmI	GAATGC	2 cut(s)	501, 949
BsnI	GGCC	2 cut(s)	362, 768
Bsp1286I	GDGCHC	2 cut(s)	277, 668
Bsp1407I	TGTACA	1 cut(s)	696
Bsp143I	GATC	4 cut(s)	48, 484, 687, 849
BspACI	CCGC	2 cut(s)	442, 981
BspANI	GGCC	2 cut(s)	362, 768
BspCNI	CTCAG	2 cut(s)	223, 928
BspHI	TCATGA	2 cut(s)	325, 903
BspLI	GGNNCC	4 cut(s)	82, 466, 915, 933
BspPI	GGATC	2 cut(s)	56, 844
BspT107I	GGYRCC	2 cut(s)	80, 913
BsrBI	CCGCTC	1 cut(s)	444
BsrDI	GCAATG	3 cut(s)	162, 699, 961
BsrFI	RCCGGY	1 cut(s)	494
BsrGI	TGTACA	1 cut(s)	696
BsrI	ACTGG	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	4 cut(s)	456, 625, 838, 993
BssMI	GATC	4 cut(s)	48, 484, 687, 849
BssT1I	CCWWGG	1 cut(s)	838
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	4 cut(s)	31, 475, 895, 910
Bst6I	CTCTTC	2 cut(s)	74, 803
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstAUI	TGTACA	1 cut(s)	696
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	4 cut(s)	231, 417, 549, 936
BstF5I	GGATG	3 cut(s)	109, 237, 852
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	4 cut(s)	51, 487, 690, 852
BstMAI	GTCTC	1 cut(s)	905
BstMBI	GATC	4 cut(s)	48, 484, 687, 849
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 272, 488, 830, 978
BstNI	CCWGG	1 cut(s)	627
BstSCI	CCNGG	2 cut(s)	625, 992
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	668
BstV1I	GCAGC	4 cut(s)	250, 295, 464, 478
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuI	GTATCC	2 cut(s)	53, 684
BsuRI	GGCC	2 cut(s)	362, 768
BtsCI	GGATG	3 cut(s)	109, 237, 852
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	2 cut(s)	819, 915
Cac8I	GCNNGC	1 cut(s)	256
CciI	TCATGA	2 cut(s)	325, 903
CfoI	GCGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	4 cut(s)	134, 361, 766, 932
Csp6I	GTAC	3 cut(s)	81, 436, 697
CspCI	CAANNNNNGTGG	2 cut(s)	522, 557
CviAII	CATG	6 cut(s)	188, 326, 669, 741, 772, 904
CviQI	GTAC	3 cut(s)	81, 436, 697
DdeI	CTNAG	4 cut(s)	231, 417, 549, 936
DpnI	GATC	4 cut(s)	50, 486, 689, 851
DpnII	GATC	4 cut(s)	48, 484, 687, 849
Eam1104I	CTCTTC	2 cut(s)	74, 803
EarI	CTCTTC	2 cut(s)	74, 803
Eco130I	CCWWGG	1 cut(s)	838
Eco47I	GGWCC	2 cut(s)	134, 932
EcoO109I	RGGNCCY	2 cut(s)	766, 932
EcoRII	CCWGG	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	838
EcoT22I	ATGCAT	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	838
FaeI	CATG	6 cut(s)	191, 329, 672, 744, 775, 907
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	945
FatI	CATG	6 cut(s)	187, 325, 668, 740, 771, 903
Fnu4HI	GCNGC	5 cut(s)	264, 309, 453, 492, 982
FokI	GGATG	3 cut(s)	116, 224, 859
Fsp4HI	GCNGC	5 cut(s)	264, 309, 453, 492, 982
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	5 cut(s)	264, 309, 453, 492, 982
HaeIII	GGCC	2 cut(s)	362, 768
HapII	CCGG	3 cut(s)	495, 648, 993
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	6 cut(s)	191, 329, 672, 744, 775, 907
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	1 cut(s)	201
HpaII	CCGG	3 cut(s)	495, 648, 993
HphI	GGTGA	2 cut(s)	221, 850
Hpy188I	TCNGA	4 cut(s)	460, 567, 597, 687
Hpy188III	TCNNGA	3 cut(s)	326, 720, 904
HpyAV	CCTTC	2 cut(s)	256, 455
HpyCH4III	ACNGT	4 cut(s)	31, 475, 895, 910
HpyCH4IV	ACGT	2 cut(s)	113, 702
HpyCH4V	TGCA	8 cut(s)	155, 179, 266, 404, 581, 605, 779, 824
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 272, 488, 830, 978
HpyF3I	CTNAG	4 cut(s)	231, 417, 549, 936
HpySE526I	ACGT	2 cut(s)	113, 702
Hsp92II	CATG	6 cut(s)	191, 329, 672, 744, 775, 907
HspAI	GCGC	1 cut(s)	226
KpnI	GGTACC	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	48, 484, 687, 849
LmnI	GCTCC	1 cut(s)	470
Lsp1109I	GCAGC	4 cut(s)	250, 295, 464, 478
LweI	GCATC	2 cut(s)	213, 275
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	2 cut(s)	113, 702
MaeIII	GTNAC	2 cut(s)	420, 923
MalI	GATC	4 cut(s)	50, 486, 689, 851
MbiI	CCGCTC	1 cut(s)	444
MboI	GATC	4 cut(s)	48, 484, 687, 849
MboII	GAAGA	5 cut(s)	61, 326, 613, 760, 790
MfeI	CAATTG	2 cut(s)	659, 780
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	2 cut(s)	277, 668
MluCI	AATT	8 cut(s)	54, 129, 528, 554, 568, 659, 780, 1034
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	687, 824
MnlI	CCTC	9 cut(s)	39, 116, 119, 285, 292, 466, 741, 779, 871
Mph1103I	ATGCAT	1 cut(s)	607
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	3 cut(s)	33, 53, 1039
MslI	CAYNNNNRTG	1 cut(s)	908
MspI	CCGG	3 cut(s)	495, 648, 993
MspR9I	CCNGG	2 cut(s)	627, 994
MunI	CAATTG	2 cut(s)	659, 780
Mva1269I	GAATGC	2 cut(s)	501, 949
MvaI	CCWGG	1 cut(s)	627
MwoI	GCNNNNNNNGC	5 cut(s)	260, 272, 488, 830, 978
NciI	CCSGG	1 cut(s)	994
NdeII	GATC	4 cut(s)	48, 484, 687, 849
NlaIII	CATG	6 cut(s)	191, 329, 672, 744, 775, 907
NlaIV	GGNNCC	4 cut(s)	82, 466, 915, 933
NsiI	ATGCAT	1 cut(s)	607
PagI	TCATGA	2 cut(s)	325, 903
PctI	GAATGC	2 cut(s)	501, 949
PdmI	GAANNNNTTC	1 cut(s)	528
PkrI	GCNGC	5 cut(s)	265, 310, 454, 493, 983
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	932
Psp5II	RGGWCCY	1 cut(s)	932
Psp6I	CCWGG	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	4 cut(s)	82, 466, 915, 933
PspPI	GGNCC	4 cut(s)	134, 361, 766, 932
PspPPI	RGGWCCY	1 cut(s)	932
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	3 cut(s)	82, 437, 698
RsaNI	GTAC	3 cut(s)	81, 436, 697
RseI	CAYNNNNRTG	1 cut(s)	908
SaqAI	TTAA	3 cut(s)	33, 53, 1039
SatI	GCNGC	5 cut(s)	264, 309, 453, 492, 982
Sau3AI	GATC	4 cut(s)	48, 484, 687, 849
Sau96I	GGNCC	4 cut(s)	134, 361, 766, 932
ScaI	AGTACT	1 cut(s)	437
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	2 cut(s)	627, 994
SduI	GDGCHC	2 cut(s)	277, 668
SfaNI	GCATC	2 cut(s)	213, 275
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	2 cut(s)	134, 932
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	8 cut(s)	54, 129, 528, 554, 568, 659, 780, 1034
SsiI	CCGC	2 cut(s)	442, 981
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	2 cut(s)	625, 992
StyI	CCWWGG	1 cut(s)	838
TaaI	ACNGT	4 cut(s)	31, 475, 895, 910
TaiI	ACGT	2 cut(s)	116, 705
TaqI	TCGA	3 cut(s)	378, 719, 1005
TasI	AATT	8 cut(s)	54, 129, 528, 554, 568, 659, 780, 1034
TatI	WGTACW	2 cut(s)	435, 696
TauI	GCSGC	1 cut(s)	984
Tru1I	TTAA	3 cut(s)	33, 53, 1039
Tru9I	TTAA	3 cut(s)	33, 53, 1039
TscAI	CASTG	2 cut(s)	826, 915
TseI	GCWGC	4 cut(s)	263, 308, 452, 491
TspDTI	ATGAA	3 cut(s)	226, 364, 550
TspRI	CASTG	2 cut(s)	826, 915
VpaK11BI	GGWCC	2 cut(s)	134, 932
XapI	RAATTY	1 cut(s)	1034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XmnI	GAANNNNTTC	1 cut(s)	528
XspI	CTAG	1 cut(s)	11
ZrmI	AGTACT	1 cut(s)	437
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.