Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

6700229 .. 6702383

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG088200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCAGCACTAGCTTACAATGAAGCAAAGGTTAATACCCGAAAGCGGATCTTAGCTGGATACACAATCTTCTTCCTTGGTACCTTGATGCTAATTGTTGTGGATTTAGCTACGTCTGGTAGTGGAGGAATTGGACCTTATATTGGGATATGTGCCATTAATGGTGCATTAGGGGTTGCAGGTGCCCATGTCGAAGGTGGGATCGTTGGCGACCTATCTTTCATGTGCCCTGAATTCATCCAGTCTTTCTTATCTGGATTGGCTGCAGCTGGTGCTTTAACCTCAGTCTTGAGGCTGATAACCAAGGCGGTCTTTGATAAATACAACAATGGTTTTCGCAAGGGGGCGATGCTATTCCTGTCAATTTCCACATTCATTCAGTTTGTGTGTATTCTTCTATATGCAATTTACTTCCCTAGATTGCCTATAGTAAAGTACTACCGCTCAAAAGCAGCCTCGGAAGGCTCTAAAACTGTATCAGCTGATCTTGCAACTGCTGGAATCCAAACAAAAGCAGACATTGAAGTCCAGAACGATGCTGCTCTTCCACAAAGATTGAGAAATAAGCAATTGTTCAATCAGAATTTAGATTATGGACTTGGCTTGTTATTGACATATGCTCTGACATTATCAATATTCCCTGGTTTCCTATATGAAAACACTCAAAACCACAAGCTCGGCTCATGGTATCCGCTTGTTCTGATCGCAGTGTACAATGCGGCGGATTTAACATCGAGGTACATACCTCTTGTGAAATGTCTGAAGATGGAATCAAGAAAGGGTCTAATGATTGCAATTCTATTGCGAATGCTTTTCGTGCCAGCATTCTATTTCACAGCAAAATATGGTGACCTGGGATGGATGATGATGCTCACATCACTCCTAGGATTTTCGAATGGCTACTTCACTGTTTGTGTCATGATAGTGGCACCCAAAGGTTACCAGGGATCTGAGCAGAATGCCTTGGGTAACTTGCTTGTACTGTGGCTTTTCTTCGGCGTATTTGCAGGGCTTTCCATTAACTGGTTATGGCTAGCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

347

Amino Acids

37.99

Weight (kDa)

9.3

Isoelectric Point (pI)

25.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	58 - 344	2.7e-32	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	170
Acc65I	GGTACC	1 cut(s)	80
AccB1I	GGYRCC	3 cut(s)	80, 182, 928
AccB7I	CCANNNNNTGG	1 cut(s)	1023
AccBSI	CCGCTC	1 cut(s)	444
AciI	CCGC	6 cut(s)	46, 308, 442, 692, 719, 722
AclWI	GGATC	3 cut(s)	56, 209, 955
AcsI	RAATTY	2 cut(s)	233, 583
AcuI	CTGAAG	1 cut(s)	782
AfaI	GTAC	5 cut(s)	82, 437, 713, 740, 981
AfiI	CCNNNNNNNGG	3 cut(s)	45, 143, 1023
AgsI	TTSAA	2 cut(s)	524, 577
AjnI	CCWGG	3 cut(s)	640, 852, 942
AluBI	AGCT	7 cut(s)	14, 56, 110, 269, 482, 676, 1037
AluI	AGCT	7 cut(s)	14, 56, 110, 269, 482, 676, 1037
AlwI	GGATC	3 cut(s)	56, 209, 955
ApeKI	GCWGC	5 cut(s)	5, 263, 266, 452, 539
ApoI	RAATTY	2 cut(s)	233, 583
AseI	ATTAAT	1 cut(s)	159
Asp718I	GGTACC	1 cut(s)	80
AspA2I	CCTAGG	1 cut(s)	883
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	860
AsuII	TTCGAA	1 cut(s)	893
AsuNHI	GCTAGC	1 cut(s)	1033
AvaII	GGWCC	1 cut(s)	134
AvrII	CCTAGG	1 cut(s)	883
BaeGI	GKGCMC	2 cut(s)	187, 230
BanI	GGYRCC	3 cut(s)	80, 182, 928
BbvI	GCAGC	5 cut(s)	17, 250, 278, 464, 526
BccI	CCATC	2 cut(s)	760, 852
BciT130I	CCWGG	3 cut(s)	642, 854, 944
BciVI	GTATCC	2 cut(s)	53, 699
BfaI	CTAG	4 cut(s)	11, 417, 884, 1034
BfmI	CTRYAG	2 cut(s)	264, 426
BfuAI	ACCTGC	1 cut(s)	170
BfuI	GTATCC	2 cut(s)	53, 699
BisI	GCNGC	6 cut(s)	6, 264, 267, 453, 540, 720
BlnI	CCTAGG	1 cut(s)	883
BlsI	GCNGC	6 cut(s)	7, 265, 268, 454, 541, 721
BmcAI	AGTACT	1 cut(s)	437
Bme1390I	CCNGG	3 cut(s)	642, 854, 944
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	3 cut(s)	82, 184, 930
BmrFI	CCNGG	3 cut(s)	642, 854, 944
BmsI	GCATC	4 cut(s)	78, 339, 526, 858
BmtI	GCTAGC	1 cut(s)	1037
Bpu14I	TTCGAA	1 cut(s)	893
BpuEI	CTTGAG	1 cut(s)	310
BsaJI	CCNNGG	8 cut(s)	76, 303, 456, 640, 853, 883, 943, 963
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 143, 1023
Bse1I	ACTGG	2 cut(s)	241, 1028
BseBI	CCWGG	3 cut(s)	642, 854, 944
BseDI	CCNNGG	8 cut(s)	76, 303, 456, 640, 853, 883, 943, 963
BseGI	GGATG	3 cut(s)	237, 863, 867
BseLI	CCNNNNNNNGG	3 cut(s)	45, 143, 1023
BseMII	CTCAG	2 cut(s)	297, 942
BseNI	ACTGG	2 cut(s)	241, 1028
BseSI	GKGCMC	2 cut(s)	187, 230
BseXI	GCAGC	5 cut(s)	17, 250, 278, 464, 526
BshNI	GGYRCC	3 cut(s)	80, 182, 928
BslI	CCNNNNNNNGG	3 cut(s)	45, 143, 1023
BsmI	GAATGC	3 cut(s)	813, 824, 964
Bsp119I	TTCGAA	1 cut(s)	893
Bsp1286I	GDGCHC	2 cut(s)	187, 230
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	5 cut(s)	48, 201, 484, 702, 947
BspACI	CCGC	6 cut(s)	46, 308, 442, 692, 719, 722
BspCNI	CTCAG	2 cut(s)	296, 943
BspHI	TCATGA	1 cut(s)	918
BspLI	GGNNCC	3 cut(s)	82, 184, 930
BspMAI	CTGCAG	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	170
BspOI	GCTAGC	1 cut(s)	1037
BspPI	GGATC	3 cut(s)	56, 209, 955
BspQI	GCTCTTC	1 cut(s)	549
BspT104I	TTCGAA	1 cut(s)	893
BspT107I	GGYRCC	3 cut(s)	80, 182, 928
BsrBI	CCGCTC	1 cut(s)	444
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	2 cut(s)	241, 1028
BssECI	CCNNGG	8 cut(s)	76, 303, 456, 640, 853, 883, 943, 963
BssMI	GATC	5 cut(s)	48, 201, 484, 702, 947
BssT1I	CCWWGG	4 cut(s)	76, 303, 883, 963
Bst2UI	CCWGG	3 cut(s)	642, 854, 944
Bst4CI	ACNGT	3 cut(s)	475, 910, 984
Bst6I	CTCTTC	1 cut(s)	549
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstAUI	TGTACA	1 cut(s)	711
BstBI	TTCGAA	1 cut(s)	893
BstC8I	GCNNGC	2 cut(s)	822, 1035
BstDEI	CTNAG	3 cut(s)	52, 283, 951
BstEII	GGTNACC	2 cut(s)	848, 938
BstF5I	GGATG	3 cut(s)	237, 863, 867
BstKTI	GATC	5 cut(s)	51, 204, 487, 705, 950
BstMBI	GATC	5 cut(s)	48, 201, 484, 702, 947
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 272, 488, 817
BstNI	CCWGG	3 cut(s)	642, 854, 944
BstPI	GGTNACC	2 cut(s)	848, 938
BstSCI	CCNGG	3 cut(s)	640, 852, 942
BstSFI	CTRYAG	2 cut(s)	264, 426
BstSLI	GKGCMC	2 cut(s)	187, 230
BstV1I	GCAGC	5 cut(s)	17, 250, 278, 464, 526
BstX2I	RGATCY	2 cut(s)	48, 947
BstYI	RGATCY	2 cut(s)	48, 947
BsuI	GTATCC	2 cut(s)	53, 699
BtgZI	GCGATG	1 cut(s)	362
BtsCI	GGATG	3 cut(s)	237, 863, 867
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	2 cut(s)	714, 906
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	2 cut(s)	822, 1035
CciI	TCATGA	1 cut(s)	918
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	5 cut(s)	81, 436, 712, 739, 980
CspCI	CAANNNNNGTGG	2 cut(s)	537, 572
CviAII	CATG	4 cut(s)	188, 223, 684, 919
CviQI	GTAC	5 cut(s)	81, 436, 712, 739, 980
DdeI	CTNAG	3 cut(s)	52, 283, 951
DpnI	GATC	5 cut(s)	50, 203, 486, 704, 949
DpnII	GATC	5 cut(s)	48, 201, 484, 702, 947
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	737
Eco130I	CCWWGG	4 cut(s)	76, 303, 883, 963
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	782
Eco91I	GGTNACC	2 cut(s)	848, 938
EcoO65I	GGTNACC	2 cut(s)	848, 938
EcoRI	GAATTC	1 cut(s)	233
EcoRII	CCWGG	3 cut(s)	640, 852, 942
EcoT14I	CCWWGG	4 cut(s)	76, 303, 883, 963
ErhI	CCWWGG	4 cut(s)	76, 303, 883, 963
FaeI	CATG	4 cut(s)	191, 226, 687, 922
FalI	AAGNNNNNCTT	4 cut(s)	35, 67, 296, 328
FatI	CATG	4 cut(s)	187, 222, 683, 918
FauNDI	CATATG	1 cut(s)	616
Fnu4HI	GCNGC	6 cut(s)	6, 264, 267, 453, 540, 720
FokI	GGATG	3 cut(s)	224, 870, 874
Fsp4HI	GCNGC	6 cut(s)	6, 264, 267, 453, 540, 720
FspBI	CTAG	4 cut(s)	11, 417, 884, 1034
GluI	GCNGC	6 cut(s)	6, 264, 267, 453, 540, 720
Hin1II	CATG	4 cut(s)	191, 226, 687, 922
HinfI	GANTC	2 cut(s)	501, 770
HphI	GGTGA	1 cut(s)	860
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	6 cut(s)	460, 582, 624, 702, 762, 952
Hpy188III	TCNNGA	5 cut(s)	255, 289, 529, 774, 919
Hpy8I	GTNNAC	1 cut(s)	712
HpyAV	CCTTC	2 cut(s)	188, 455
HpyCH4III	ACNGT	3 cut(s)	475, 910, 984
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	7 cut(s)	167, 179, 266, 404, 491, 794, 1007
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 272, 488, 817
HpyF3I	CTNAG	3 cut(s)	52, 283, 951
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	4 cut(s)	191, 226, 687, 922
KpnI	GGTACC	1 cut(s)	84
Kzo9I	GATC	5 cut(s)	48, 201, 484, 702, 947
LguI	GCTCTTC	1 cut(s)	549
Lsp1109I	GCAGC	5 cut(s)	17, 250, 278, 464, 526
LweI	GCATC	4 cut(s)	78, 339, 526, 858
MaeI	CTAG	4 cut(s)	11, 417, 884, 1034
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	3 cut(s)	848, 938, 968
MalI	GATC	5 cut(s)	50, 203, 486, 704, 949
MbiI	CCGCTC	1 cut(s)	444
MboI	GATC	5 cut(s)	48, 201, 484, 702, 947
MboII	GAAGA	6 cut(s)	61, 64, 386, 536, 775, 985
MfeI	CAATTG	1 cut(s)	569
MflI	RGATCY	2 cut(s)	48, 947
MhlI	GDGCHC	2 cut(s)	187, 230
MluCI	AATT	8 cut(s)	93, 129, 233, 363, 405, 569, 583, 795
MnlI	CCTC	6 cut(s)	119, 285, 292, 466, 729, 756
MseI	TTAA	5 cut(s)	33, 159, 278, 728, 1020
MslI	CAYNNNNRTG	1 cut(s)	923
MspA1I	CMGCKG	2 cut(s)	269, 482
MspR9I	CCNGG	3 cut(s)	642, 854, 944
MunI	CAATTG	1 cut(s)	569
Mva1269I	GAATGC	3 cut(s)	813, 824, 964
MvaI	CCWGG	3 cut(s)	642, 854, 944
MwoI	GCNNNNNNNGC	4 cut(s)	11, 272, 488, 817
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	5 cut(s)	48, 201, 484, 702, 947
NheI	GCTAGC	1 cut(s)	1033
NlaIII	CATG	4 cut(s)	191, 226, 687, 922
NlaIV	GGNNCC	3 cut(s)	82, 184, 930
NmeAIII	GCCGAG	1 cut(s)	657
NmuCI	GTSAC	1 cut(s)	848
NspV	TTCGAA	1 cut(s)	893
PagI	TCATGA	1 cut(s)	918
PaqCI	CACCTGC	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	549
PctI	GAATGC	3 cut(s)	813, 824, 964
PfeI	GAWTC	2 cut(s)	501, 770
PflMI	CCANNNNNTGG	1 cut(s)	1023
PkrI	GCNGC	6 cut(s)	7, 265, 268, 454, 541, 721
PshBI	ATTAAT	1 cut(s)	159
Psp6I	CCWGG	3 cut(s)	640, 852, 942
PspEI	GGTNACC	2 cut(s)	848, 938
PspGI	CCWGG	3 cut(s)	640, 852, 942
PspN4I	GGNNCC	3 cut(s)	82, 184, 930
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	48, 947
PvuII	CAGCTG	2 cut(s)	269, 482
RsaI	GTAC	5 cut(s)	82, 437, 713, 740, 981
RsaNI	GTAC	5 cut(s)	81, 436, 712, 739, 980
RseI	CAYNNNNRTG	1 cut(s)	923
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	5 cut(s)	33, 159, 278, 728, 1020
SatI	GCNGC	6 cut(s)	6, 264, 267, 453, 540, 720
Sau3AI	GATC	5 cut(s)	48, 201, 484, 702, 947
Sau96I	GGNCC	1 cut(s)	134
ScaI	AGTACT	1 cut(s)	437
ScrFI	CCNGG	3 cut(s)	642, 854, 944
SduI	GDGCHC	2 cut(s)	187, 230
SfaNI	GCATC	4 cut(s)	78, 339, 526, 858
SfcI	CTRYAG	2 cut(s)	264, 426
SfuI	TTCGAA	1 cut(s)	893
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	923
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	8 cut(s)	93, 129, 233, 363, 405, 569, 583, 795
SsiI	CCGC	6 cut(s)	46, 308, 442, 692, 719, 722
SspI	AATATT	1 cut(s)	636
SspMI	CTAG	4 cut(s)	11, 417, 884, 1034
StyD4I	CCNGG	3 cut(s)	640, 852, 942
StyI	CCWWGG	4 cut(s)	76, 303, 883, 963
TaaI	ACNGT	3 cut(s)	475, 910, 984
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	192, 734, 893
TasI	AATT	8 cut(s)	93, 129, 233, 363, 405, 569, 583, 795
TatI	WGTACW	3 cut(s)	435, 711, 979
TauI	GCSGC	1 cut(s)	722
TfiI	GAWTC	2 cut(s)	501, 770
Tru1I	TTAA	5 cut(s)	33, 159, 278, 728, 1020
Tru9I	TTAA	5 cut(s)	33, 159, 278, 728, 1020
TscAI	CASTG	2 cut(s)	714, 913
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	5 cut(s)	5, 263, 266, 452, 539
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	5 cut(s)	36, 211, 226, 364, 669
TspRI	CASTG	2 cut(s)	714, 913
Van91I	CCANNNNNTGG	1 cut(s)	1023
VpaK11BI	GGWCC	1 cut(s)	134
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	2 cut(s)	233, 583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XmaJI	CCTAGG	1 cut(s)	883
XspI	CTAG	4 cut(s)	11, 417, 884, 1034
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.