Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Reverse (-)

60286786 .. 60289130

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00267210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCAGCACTAGCTTACAATGAAGCAAAGGTTAATACCCGAAAGCGGATCTTAGCTGGATACACTATCTTCTTCCTTGGTACCTTGATGCTAATTGTTGTGGATTTAGCTACGTCTGGTAGTGGAGGAATTGGACCTTATATTGGGATATGTGCCATTAATGGTGCATTAGGGGTTGCAGGTGCCCATGTCGAAGGTGGGATCGTTGGCGACCTATCTTTCATGTGCCCTGAATTCATCCAGTCTTTCTTATCTGGATTGGCTGCAGCTGGTGCTTTAACCTCAGTCTTGAGGCTGATAACCAAGGCGGTCTTTGATAAATACAGCAATGGTCTTCGCAAGGGGGCAGTGCTATTCCTGTCAATTTCCACATTCATTCAGTTCGTGTGTATTCTTCTATACGCAATTTACTTCCCTAGATTGCCTATAGTAAAGTACTACCGCTCAAAAGCAGCCTCAGAAGGCTCTAAAACTGTATCAGCTGATCTTGCAACTGCTGGAATCCAAACAAAAGCAGACATTGAAGTCCAGAACGATGCTGCTCTTCCACAACGATTGAGCAATAAGCAATTGTTCAATCAGAATTTAGATTATGGACTTGGCTTGTTTTTGACATATGCTCTGACATTATCAATATTCCCTGGTTTCCTATATGAAAACACTCAAAACCACAAGCTCGGCTCATGGTATCCGCTTGTTCTGATCGCAGTGTACAATGCGGTGGATTTAACATCGAGGTACATACCTCTTGTGAATTGTCTGAAGATGGAATCAAGAAAGGGTCTAATGATTGCAATTCTATTGCGAATGCTCTTCGTGCCAGCATTCTATTTCACAGCAAAATATGGTGACCTGGGATGGATGATGATGCTCACATCACTCCTAGGATTTTCGAACGGCTACTTCACTGTTTGTGTCCTGATAGTAGCACCCAAAGGTTACCAGGGATCTGAGCAGAATGCCTTGGGTAACTTGCTTGTACTGTGGCTTTTCTTCGGCGTATTTGCAGGGCTTTCCATTAATTGGTTATGGCTAGCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

347

Amino Acids

37.86

Weight (kDa)

9.15

Isoelectric Point (pI)

25.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	58 - 344	2.6e-32	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	170
Acc65I	GGTACC	1 cut(s)	80
AccB1I	GGYRCC	2 cut(s)	80, 182
AccB7I	CCANNNNNTGG	1 cut(s)	1023
AccBSI	CCGCTC	1 cut(s)	444
AciI	CCGC	5 cut(s)	46, 308, 442, 692, 719
AclWI	GGATC	3 cut(s)	56, 209, 955
AcsI	RAATTY	2 cut(s)	233, 583
AcuI	CTGAAG	1 cut(s)	782
AfaI	GTAC	5 cut(s)	82, 437, 713, 740, 981
AfiI	CCNNNNNNNGG	3 cut(s)	45, 143, 1023
AgsI	TTSAA	2 cut(s)	524, 577
AjnI	CCWGG	3 cut(s)	640, 852, 942
AluBI	AGCT	7 cut(s)	14, 56, 110, 269, 482, 676, 1037
AluI	AGCT	7 cut(s)	14, 56, 110, 269, 482, 676, 1037
AlwI	GGATC	3 cut(s)	56, 209, 955
ApeKI	GCWGC	5 cut(s)	5, 263, 266, 452, 539
ApoI	RAATTY	2 cut(s)	233, 583
AseI	ATTAAT	2 cut(s)	159, 1020
Asp718I	GGTACC	1 cut(s)	80
AspA2I	CCTAGG	1 cut(s)	883
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	860
AsuII	TTCGAA	1 cut(s)	893
AsuNHI	GCTAGC	1 cut(s)	1033
AvaII	GGWCC	1 cut(s)	134
AvrII	CCTAGG	1 cut(s)	883
BaeGI	GKGCMC	2 cut(s)	187, 230
BanI	GGYRCC	2 cut(s)	80, 182
BbsI	GAAGAC	1 cut(s)	326
BbvI	GCAGC	5 cut(s)	17, 250, 278, 464, 526
BccI	CCATC	2 cut(s)	760, 852
BceAI	ACGGC	1 cut(s)	913
BciT130I	CCWGG	3 cut(s)	642, 854, 944
BciVI	GTATCC	2 cut(s)	53, 699
BfaI	CTAG	4 cut(s)	11, 417, 884, 1034
BfmI	CTRYAG	2 cut(s)	264, 426
BfuAI	ACCTGC	1 cut(s)	170
BfuI	GTATCC	2 cut(s)	53, 699
BisI	GCNGC	5 cut(s)	6, 264, 267, 453, 540
BlnI	CCTAGG	1 cut(s)	883
BlsI	GCNGC	5 cut(s)	7, 265, 268, 454, 541
BmcAI	AGTACT	1 cut(s)	437
Bme1390I	CCNGG	3 cut(s)	642, 854, 944
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	82, 184
BmrFI	CCNGG	3 cut(s)	642, 854, 944
BmsI	GCATC	3 cut(s)	78, 526, 858
BmtI	GCTAGC	1 cut(s)	1037
BpiI	GAAGAC	1 cut(s)	326
Bpu14I	TTCGAA	1 cut(s)	893
BpuEI	CTTGAG	1 cut(s)	310
BsaJI	CCNNGG	7 cut(s)	76, 303, 640, 853, 883, 943, 963
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 143, 1023
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	3 cut(s)	642, 854, 944
BseDI	CCNNGG	7 cut(s)	76, 303, 640, 853, 883, 943, 963
BseGI	GGATG	3 cut(s)	237, 863, 867
BseLI	CCNNNNNNNGG	3 cut(s)	45, 143, 1023
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	3 cut(s)	297, 471, 942
BseNI	ACTGG	1 cut(s)	241
BseSI	GKGCMC	2 cut(s)	187, 230
BseXI	GCAGC	5 cut(s)	17, 250, 278, 464, 526
BshNI	GGYRCC	2 cut(s)	80, 182
BslI	CCNNNNNNNGG	3 cut(s)	45, 143, 1023
BsmI	GAATGC	3 cut(s)	813, 824, 964
Bsp119I	TTCGAA	1 cut(s)	893
Bsp1286I	GDGCHC	2 cut(s)	187, 230
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	5 cut(s)	48, 201, 484, 702, 947
BspACI	CCGC	5 cut(s)	46, 308, 442, 692, 719
BspCNI	CTCAG	3 cut(s)	296, 470, 943
BspLI	GGNNCC	2 cut(s)	82, 184
BspMAI	CTGCAG	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	170
BspOI	GCTAGC	1 cut(s)	1037
BspPI	GGATC	3 cut(s)	56, 209, 955
BspQI	GCTCTTC	2 cut(s)	549, 818
BspT104I	TTCGAA	1 cut(s)	893
BspT107I	GGYRCC	2 cut(s)	80, 182
BsrBI	CCGCTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	334
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	7 cut(s)	76, 303, 640, 853, 883, 943, 963
BssMI	GATC	5 cut(s)	48, 201, 484, 702, 947
BssT1I	CCWWGG	4 cut(s)	76, 303, 883, 963
Bst2UI	CCWGG	3 cut(s)	642, 854, 944
Bst4CI	ACNGT	3 cut(s)	475, 910, 984
Bst6I	CTCTTC	2 cut(s)	549, 818
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstAUI	TGTACA	1 cut(s)	711
BstBI	TTCGAA	1 cut(s)	893
BstC8I	GCNNGC	2 cut(s)	822, 1035
BstDEI	CTNAG	4 cut(s)	52, 283, 457, 951
BstEII	GGTNACC	2 cut(s)	848, 938
BstF5I	GGATG	3 cut(s)	237, 863, 867
BstKTI	GATC	5 cut(s)	51, 204, 487, 705, 950
BstMBI	GATC	5 cut(s)	48, 201, 484, 702, 947
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 272, 488, 817
BstNI	CCWGG	3 cut(s)	642, 854, 944
BstPI	GGTNACC	2 cut(s)	848, 938
BstSCI	CCNGG	3 cut(s)	640, 852, 942
BstSFI	CTRYAG	2 cut(s)	264, 426
BstSLI	GKGCMC	2 cut(s)	187, 230
BstV1I	GCAGC	5 cut(s)	17, 250, 278, 464, 526
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	2 cut(s)	48, 947
BstYI	RGATCY	2 cut(s)	48, 947
BsuI	GTATCC	2 cut(s)	53, 699
BtsCI	GGATG	3 cut(s)	237, 863, 867
BtsI	GCAGTG	2 cut(s)	354, 714
BtsIMutI	CAGTG	3 cut(s)	354, 714, 906
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	2 cut(s)	822, 1035
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	5 cut(s)	81, 436, 712, 739, 980
CspCI	CAANNNNNGTGG	2 cut(s)	537, 572
CviAII	CATG	3 cut(s)	188, 223, 684
CviQI	GTAC	5 cut(s)	81, 436, 712, 739, 980
DdeI	CTNAG	4 cut(s)	52, 283, 457, 951
DpnI	GATC	5 cut(s)	50, 203, 486, 704, 949
DpnII	GATC	5 cut(s)	48, 201, 484, 702, 947
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
Eam1104I	CTCTTC	2 cut(s)	549, 818
EarI	CTCTTC	2 cut(s)	549, 818
Eco130I	CCWWGG	4 cut(s)	76, 303, 883, 963
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	782
Eco91I	GGTNACC	2 cut(s)	848, 938
EcoO65I	GGTNACC	2 cut(s)	848, 938
EcoRI	GAATTC	1 cut(s)	233
EcoRII	CCWGG	3 cut(s)	640, 852, 942
EcoT14I	CCWWGG	4 cut(s)	76, 303, 883, 963
ErhI	CCWWGG	4 cut(s)	76, 303, 883, 963
FaeI	CATG	3 cut(s)	191, 226, 687
FalI	AAGNNNNNCTT	4 cut(s)	35, 67, 296, 328
FatI	CATG	3 cut(s)	187, 222, 683
FauNDI	CATATG	1 cut(s)	616
Fnu4HI	GCNGC	5 cut(s)	6, 264, 267, 453, 540
FokI	GGATG	3 cut(s)	224, 870, 874
Fsp4HI	GCNGC	5 cut(s)	6, 264, 267, 453, 540
FspBI	CTAG	4 cut(s)	11, 417, 884, 1034
GluI	GCNGC	5 cut(s)	6, 264, 267, 453, 540
Hin1II	CATG	3 cut(s)	191, 226, 687
HinfI	GANTC	2 cut(s)	501, 770
HphI	GGTGA	1 cut(s)	860
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	6 cut(s)	460, 582, 624, 702, 762, 952
Hpy188III	TCNNGA	5 cut(s)	255, 289, 529, 774, 919
Hpy8I	GTNNAC	1 cut(s)	712
HpyAV	CCTTC	2 cut(s)	188, 455
HpyCH4III	ACNGT	3 cut(s)	475, 910, 984
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	6 cut(s)	167, 179, 266, 491, 794, 1007
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 272, 488, 817
HpyF3I	CTNAG	4 cut(s)	52, 283, 457, 951
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	191, 226, 687
KpnI	GGTACC	1 cut(s)	84
Kzo9I	GATC	5 cut(s)	48, 201, 484, 702, 947
LguI	GCTCTTC	2 cut(s)	549, 818
Lsp1109I	GCAGC	5 cut(s)	17, 250, 278, 464, 526
LweI	GCATC	3 cut(s)	78, 526, 858
MaeI	CTAG	4 cut(s)	11, 417, 884, 1034
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	3 cut(s)	848, 938, 968
MalI	GATC	5 cut(s)	50, 203, 486, 704, 949
MbiI	CCGCTC	1 cut(s)	444
MboI	GATC	5 cut(s)	48, 201, 484, 702, 947
MboII	GAAGA	8 cut(s)	61, 64, 326, 386, 536, 775, 805, 985
MfeI	CAATTG	1 cut(s)	569
MflI	RGATCY	2 cut(s)	48, 947
MhlI	GDGCHC	2 cut(s)	187, 230
MnlI	CCTC	6 cut(s)	119, 285, 292, 466, 729, 756
MseI	TTAA	5 cut(s)	33, 159, 278, 728, 1020
MspA1I	CMGCKG	2 cut(s)	269, 482
MspR9I	CCNGG	3 cut(s)	642, 854, 944
MunI	CAATTG	1 cut(s)	569
Mva1269I	GAATGC	3 cut(s)	813, 824, 964
MvaI	CCWGG	3 cut(s)	642, 854, 944
MwoI	GCNNNNNNNGC	4 cut(s)	11, 272, 488, 817
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	5 cut(s)	48, 201, 484, 702, 947
NheI	GCTAGC	1 cut(s)	1033
NlaIII	CATG	3 cut(s)	191, 226, 687
NlaIV	GGNNCC	2 cut(s)	82, 184
NmeAIII	GCCGAG	1 cut(s)	657
NmuCI	GTSAC	1 cut(s)	848
NspV	TTCGAA	1 cut(s)	893
PaqCI	CACCTGC	1 cut(s)	170
PciSI	GCTCTTC	2 cut(s)	549, 818
PctI	GAATGC	3 cut(s)	813, 824, 964
PfeI	GAWTC	2 cut(s)	501, 770
PflMI	CCANNNNNTGG	1 cut(s)	1023
PkrI	GCNGC	5 cut(s)	7, 265, 268, 454, 541
PshBI	ATTAAT	2 cut(s)	159, 1020
Psp6I	CCWGG	3 cut(s)	640, 852, 942
PspEI	GGTNACC	2 cut(s)	848, 938
PspGI	CCWGG	3 cut(s)	640, 852, 942
PspN4I	GGNNCC	2 cut(s)	82, 184
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	48, 947
PvuII	CAGCTG	2 cut(s)	269, 482
RsaI	GTAC	5 cut(s)	82, 437, 713, 740, 981
RsaNI	GTAC	5 cut(s)	81, 436, 712, 739, 980
SapI	GCTCTTC	2 cut(s)	549, 818
SaqAI	TTAA	5 cut(s)	33, 159, 278, 728, 1020
SatI	GCNGC	5 cut(s)	6, 264, 267, 453, 540
Sau3AI	GATC	5 cut(s)	48, 201, 484, 702, 947
Sau96I	GGNCC	1 cut(s)	134
ScaI	AGTACT	1 cut(s)	437
ScrFI	CCNGG	3 cut(s)	642, 854, 944
SduI	GDGCHC	2 cut(s)	187, 230
SfaNI	GCATC	3 cut(s)	78, 526, 858
SfcI	CTRYAG	2 cut(s)	264, 426
SfuI	TTCGAA	1 cut(s)	893
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SsiI	CCGC	5 cut(s)	46, 308, 442, 692, 719
SspI	AATATT	1 cut(s)	636
SspMI	CTAG	4 cut(s)	11, 417, 884, 1034
StyD4I	CCNGG	3 cut(s)	640, 852, 942
StyI	CCWWGG	4 cut(s)	76, 303, 883, 963
TaaI	ACNGT	3 cut(s)	475, 910, 984
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	192, 734, 893
TatI	WGTACW	3 cut(s)	435, 711, 979
TfiI	GAWTC	2 cut(s)	501, 770
Tru1I	TTAA	5 cut(s)	33, 159, 278, 728, 1020
Tru9I	TTAA	5 cut(s)	33, 159, 278, 728, 1020
TscAI	CASTG	3 cut(s)	354, 714, 913
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	5 cut(s)	5, 263, 266, 452, 539
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	5 cut(s)	36, 211, 226, 364, 669
TspRI	CASTG	3 cut(s)	354, 714, 913
Van91I	CCANNNNNTGG	1 cut(s)	1023
VpaK11BI	GGWCC	1 cut(s)	134
VspI	ATTAAT	2 cut(s)	159, 1020
XapI	RAATTY	2 cut(s)	233, 583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XmaJI	CCTAGG	1 cut(s)	883
XspI	CTAG	4 cut(s)	11, 417, 884, 1034
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.