Rw0G002660

Equilibrative nucleotide transporter 3-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00083
Physical Location & Seq
Forward (+)
41408 .. 43833
2426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002660.1

Sequence Viewer

Length: 1287 bp
ATGTCTAAGACTATCCCTATTGAAATCCAGGGCGTTGCCATAACCGAAATTAGTGAAAGCAAGACTCCACCGAGGCTTGAGGGACAATATAAAGCTATAGCAGTTTGTTGGGTTCTTGGACTAGGAACCCTATTTGCATGGAACAGTGTGGTCACTATAGGGGATTACTATTACACCTTGTTTCCGAAATACCATCCTTCGCGGGTTCTTACCCTGGTTTATCAACCATTTGCACTTATAGCAATGGCAGCACTAGCTTACAATGAAGCAATGGTTAATACCCGAAAGCGGATCTTAGCTGGATACACAATCTTCTTCCTTGGTACCTTGATGCTAATTGTTGTGGATTTAGCTACGTCTGGTAGTGGAGGAATTGGACCTTATATTGGGATATGTGCCATTAATGGTGCATTAGGGGTTGCAGGTGCCCATGTCGAAGGTGGGATCGTTGGCGACCTATCTTTCATGTGCCCTGAATTCATCCAGTCTTTCTTATCTGGATTGGCTGCAGCTGGTGCTTTAACCTCAGTCTTGAGGCTGATAACCAAGGCGGTCTTTGATAAATACAACAATGGTTTTCGCAAGGGGGCGATGCTATTCCTGTCAATTTCCACATTCATTCAGTTTGTGTGTATTCTTCTATATGCAATTTACTTCCCTAGATTGCCTATAGTAAAGTACTACCGCTCAAAAGCAGCCTCGGAAGGCTCTAAAACTGTATCAGCTGATCTTGCAACTGCTGGAATCCAAACAAAAGCAGACATTGAAGTCCAGAACGATGCTGCTCTTCCACAAAGATTGAGAAATAAGCAATTGTTCAATCAGAATTTAGATTATGGACTTGGCTTGTTATTGACATATGCTCTGACATTATCAATATTCCCTGGTTTCCTATATGAAAACACTCAAAACCACAAGCTCGGCTCATGGTATCCGCTTGTTCTGATCGCAGTGTACAATGCGGCGGATTTAACATCGAGGTACATACCTCTTGTGAAATGTCTGAAGATGGAATCAAGAAAGGGTCTAATGATTGCAATTCTATTGCGAATGCTTTTCGTGCCAGCATTCTATTTCACAGCAAAATATGGTGACCTGGGATGGATGATGATGCTCACATCACTCCTAGGATTTTCGAATGGCTACTTCACTGTTTGTGTCATGATAGTGGCACCCAAAGGTTACCAGGGATCTGAGCAGAATGCCTTGGGTAACTTGCTTGTACTTTGGCTTTTCTTCGGCGTATTTGCAGGGCTTTCCATTAACTGGTTATGGCTAGCTCATTAG

Protein Analysis

428

Amino Acids

47.06

Weight (kDa)

9.16

Isoelectric Point (pI)

30.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 139 - 425 6.2e-32 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 413
AasI GACNNNNNNGTC 1 cut(s) 767
Acc36I ACCTGC 1 cut(s) 413
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 3 cut(s) 323, 425, 1171
AccB7I CCANNNNNTGG 1 cut(s) 1266
AccBSI CCGCTC 1 cut(s) 687
AccII CGCG 1 cut(s) 202
AciI CCGC 7 cut(s) 202, 289, 551, 685, 935, 962, 965
AclWI GGATC 3 cut(s) 299, 452, 1198
AcsI RAATTY 2 cut(s) 476, 826
AcuI CTGAAG 1 cut(s) 1025
AfaI GTAC 5 cut(s) 325, 680, 956, 983, 1224
AfiI CCNNNNNNNGG 3 cut(s) 288, 386, 1266
AgsI TTSAA 3 cut(s) 23, 767, 820
AjnI CCWGG 5 cut(s) 27, 213, 883, 1095, 1185
AluBI AGCT 8 cut(s) 95, 257, 299, 353, 512, 725, 919, 1280
AluI AGCT 8 cut(s) 95, 257, 299, 353, 512, 725, 919, 1280
AlwI GGATC 3 cut(s) 299, 452, 1198
ApeKI GCWGC 5 cut(s) 248, 506, 509, 695, 782
ApoI RAATTY 2 cut(s) 476, 826
AseI ATTAAT 1 cut(s) 402
Asp718I GGTACC 1 cut(s) 323
AspA2I CCTAGG 1 cut(s) 1126
AspS9I GGNCC 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 1103
AsuII TTCGAA 1 cut(s) 1136
AsuNHI GCTAGC 1 cut(s) 1276
AvaII GGWCC 1 cut(s) 377
AvrII CCTAGG 1 cut(s) 1126
BaeGI GKGCMC 2 cut(s) 430, 473
BanI GGYRCC 3 cut(s) 323, 425, 1171
BbvI GCAGC 5 cut(s) 260, 493, 521, 707, 769
BccI CCATC 3 cut(s) 201, 1003, 1095
BciT130I CCWGG 5 cut(s) 29, 215, 885, 1097, 1187
BciVI GTATCC 2 cut(s) 296, 942
BfaI CTAG 5 cut(s) 122, 254, 660, 1127, 1277
BfmI CTRYAG 4 cut(s) 96, 156, 507, 669
BfuAI ACCTGC 1 cut(s) 413
BfuI GTATCC 2 cut(s) 296, 942
BisI GCNGC 6 cut(s) 249, 507, 510, 696, 783, 963
BlnI CCTAGG 1 cut(s) 1126
BlsI GCNGC 6 cut(s) 250, 508, 511, 697, 784, 964
BmcAI AGTACT 1 cut(s) 680
Bme1390I CCNGG 5 cut(s) 29, 215, 885, 1097, 1187
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 4 cut(s) 127, 325, 427, 1173
BmrFI CCNGG 5 cut(s) 29, 215, 885, 1097, 1187
BmsI GCATC 4 cut(s) 321, 582, 769, 1101
BmtI GCTAGC 1 cut(s) 1280
Bpu14I TTCGAA 1 cut(s) 1136
BpuEI CTTGAG 2 cut(s) 98, 553
Bsc4I CCNNNNNNNGG 3 cut(s) 288, 386, 1266
Bse1I ACTGG 2 cut(s) 484, 1271
Bse3DI GCAATG 2 cut(s) 249, 276
BseBI CCWGG 5 cut(s) 29, 215, 885, 1097, 1187
BseGI GGATG 4 cut(s) 193, 480, 1106, 1110
BseLI CCNNNNNNNGG 3 cut(s) 288, 386, 1266
BseMI GCAATG 2 cut(s) 249, 276
BseMII CTCAG 2 cut(s) 540, 1185
BseNI ACTGG 2 cut(s) 484, 1271
BseSI GKGCMC 2 cut(s) 430, 473
BseXI GCAGC 5 cut(s) 260, 493, 521, 707, 769
Bsh1236I CGCG 1 cut(s) 202
BshNI GGYRCC 3 cut(s) 323, 425, 1171
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 3 cut(s) 288, 386, 1266
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 3 cut(s) 1056, 1067, 1207
Bsp119I TTCGAA 1 cut(s) 1136
Bsp1286I GDGCHC 2 cut(s) 430, 473
Bsp1407I TGTACA 1 cut(s) 954
Bsp143I GATC 5 cut(s) 291, 444, 727, 945, 1190
BspACI CCGC 7 cut(s) 202, 289, 551, 685, 935, 962, 965
BspCNI CTCAG 2 cut(s) 539, 1186
BspFNI CGCG 1 cut(s) 202
BspHI TCATGA 1 cut(s) 1161
BspLI GGNNCC 4 cut(s) 127, 325, 427, 1173
BspMAI CTGCAG 1 cut(s) 511
BspMI ACCTGC 1 cut(s) 413
BspOI GCTAGC 1 cut(s) 1280
BspPI GGATC 3 cut(s) 299, 452, 1198
BspQI GCTCTTC 1 cut(s) 792
BspT104I TTCGAA 1 cut(s) 1136
BspT107I GGYRCC 3 cut(s) 323, 425, 1171
BsrBI CCGCTC 1 cut(s) 687
BsrDI GCAATG 2 cut(s) 249, 276
BsrGI TGTACA 1 cut(s) 954
BsrI ACTGG 2 cut(s) 484, 1271
BssMI GATC 5 cut(s) 291, 444, 727, 945, 1190
BssT1I CCWWGG 4 cut(s) 319, 546, 1126, 1206
Bst2UI CCWGG 5 cut(s) 29, 215, 885, 1097, 1187
Bst4CI ACNGT 3 cut(s) 146, 718, 1153
Bst6I CTCTTC 1 cut(s) 792
BstAPI GCANNNNNTGC 1 cut(s) 515
BstAUI TGTACA 1 cut(s) 954
BstBI TTCGAA 1 cut(s) 1136
BstC8I GCNNGC 2 cut(s) 1065, 1278
BstDEI CTNAG 4 cut(s) 6, 295, 526, 1194
BstEII GGTNACC 2 cut(s) 1091, 1181
BstF5I GGATG 4 cut(s) 193, 480, 1106, 1110
BstFNI CGCG 1 cut(s) 202
BstKTI GATC 5 cut(s) 294, 447, 730, 948, 1193
BstMBI GATC 5 cut(s) 291, 444, 727, 945, 1190
BstMWI GCNNNNNNNGC 6 cut(s) 239, 248, 254, 515, 731, 1060
BstNI CCWGG 5 cut(s) 29, 215, 885, 1097, 1187
BstPI GGTNACC 2 cut(s) 1091, 1181
BstSCI CCNGG 5 cut(s) 27, 213, 883, 1095, 1185
BstSFI CTRYAG 4 cut(s) 96, 156, 507, 669
BstSLI GKGCMC 2 cut(s) 430, 473
BstUI CGCG 1 cut(s) 202
BstV1I GCAGC 5 cut(s) 260, 493, 521, 707, 769
BstX2I RGATCY 2 cut(s) 291, 1190
BstYI RGATCY 2 cut(s) 291, 1190
BsuI GTATCC 2 cut(s) 296, 942
BtgZI GCGATG 1 cut(s) 605
BtsCI GGATG 4 cut(s) 193, 480, 1106, 1110
BtsI GCAGTG 1 cut(s) 957
BtsIMutI CAGTG 3 cut(s) 151, 957, 1149
BveI ACCTGC 1 cut(s) 413
Cac8I GCNNGC 2 cut(s) 1065, 1278
CciI TCATGA 1 cut(s) 1161
Cfr13I GGNCC 1 cut(s) 377
Csp6I GTAC 5 cut(s) 324, 679, 955, 982, 1223
CspCI CAANNNNNGTGG 2 cut(s) 780, 815
CviAII CATG 5 cut(s) 138, 431, 466, 927, 1162
CviQI GTAC 5 cut(s) 324, 679, 955, 982, 1223
DdeI CTNAG 4 cut(s) 6, 295, 526, 1194
DpnI GATC 5 cut(s) 293, 446, 729, 947, 1192
DpnII GATC 5 cut(s) 291, 444, 727, 945, 1190
DrdI GACNNNNNNGTC 1 cut(s) 767
DseDI GACNNNNNNGTC 1 cut(s) 767
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
EciI GGCGGA 1 cut(s) 980
Eco130I CCWWGG 4 cut(s) 319, 546, 1126, 1206
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 1025
Eco91I GGTNACC 2 cut(s) 1091, 1181
EcoO65I GGTNACC 2 cut(s) 1091, 1181
EcoRI GAATTC 1 cut(s) 476
EcoRII CCWGG 5 cut(s) 27, 213, 883, 1095, 1185
EcoT14I CCWWGG 4 cut(s) 319, 546, 1126, 1206
ErhI CCWWGG 4 cut(s) 319, 546, 1126, 1206
FaeI CATG 5 cut(s) 141, 434, 469, 930, 1165
FalI AAGNNNNNCTT 4 cut(s) 278, 310, 539, 571
FaqI GGGAC 1 cut(s) 96
FatI CATG 5 cut(s) 137, 430, 465, 926, 1161
FauI CCCGC 1 cut(s) 195
FauNDI CATATG 1 cut(s) 859
Fnu4HI GCNGC 6 cut(s) 249, 507, 510, 696, 783, 963
FokI GGATG 4 cut(s) 180, 467, 1113, 1117
Fsp4HI GCNGC 6 cut(s) 249, 507, 510, 696, 783, 963
FspBI CTAG 5 cut(s) 122, 254, 660, 1127, 1277
GluI GCNGC 6 cut(s) 249, 507, 510, 696, 783, 963
Hin1II CATG 5 cut(s) 141, 434, 469, 930, 1165
HinfI GANTC 3 cut(s) 64, 744, 1013
HphI GGTGA 1 cut(s) 1103
Hpy166II GTNNAC 1 cut(s) 955
Hpy188I TCNGA 7 cut(s) 186, 703, 825, 867, 945, 1005, 1195
Hpy188III TCNNGA 5 cut(s) 498, 532, 772, 1017, 1162
Hpy8I GTNNAC 1 cut(s) 955
HpyAV CCTTC 3 cut(s) 207, 431, 698
HpyCH4III ACNGT 3 cut(s) 146, 718, 1153
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 9 cut(s) 137, 233, 410, 422, 509, 647, 734, 1037, 1250
HpyF10VI GCNNNNNNNGC 6 cut(s) 239, 248, 254, 515, 731, 1060
HpyF3I CTNAG 4 cut(s) 6, 295, 526, 1194
HpySE526I ACGT 1 cut(s) 356
Hsp92II CATG 5 cut(s) 141, 434, 469, 930, 1165
KpnI GGTACC 1 cut(s) 327
Kzo9I GATC 5 cut(s) 291, 444, 727, 945, 1190
LguI GCTCTTC 1 cut(s) 792
Lsp1109I GCAGC 5 cut(s) 260, 493, 521, 707, 769
LweI GCATC 4 cut(s) 321, 582, 769, 1101
MaeI CTAG 5 cut(s) 122, 254, 660, 1127, 1277
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 4 cut(s) 151, 1091, 1181, 1211
MalI GATC 5 cut(s) 293, 446, 729, 947, 1192
MbiI CCGCTC 1 cut(s) 687
MboI GATC 5 cut(s) 291, 444, 727, 945, 1190
MboII GAAGA 6 cut(s) 304, 307, 629, 779, 1018, 1228
MfeI CAATTG 1 cut(s) 812
MflI RGATCY 2 cut(s) 291, 1190
MhlI GDGCHC 2 cut(s) 430, 473
MluCI AATT 9 cut(s) 48, 336, 372, 476, 606, 648, 812, 826, 1038
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 8 cut(s) 66, 73, 362, 528, 535, 709, 972, 999
MseI TTAA 5 cut(s) 276, 402, 521, 971, 1263
MslI CAYNNNNRTG 1 cut(s) 1166
MspA1I CMGCKG 2 cut(s) 512, 725
MspR9I CCNGG 5 cut(s) 29, 215, 885, 1097, 1187
MunI CAATTG 1 cut(s) 812
Mva1269I GAATGC 3 cut(s) 1056, 1067, 1207
MvaI CCWGG 5 cut(s) 29, 215, 885, 1097, 1187
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 6 cut(s) 239, 248, 254, 515, 731, 1060
NdeI CATATG 1 cut(s) 859
NdeII GATC 5 cut(s) 291, 444, 727, 945, 1190
NheI GCTAGC 1 cut(s) 1276
NlaIII CATG 5 cut(s) 141, 434, 469, 930, 1165
NlaIV GGNNCC 4 cut(s) 127, 325, 427, 1173
NmeAIII GCCGAG 1 cut(s) 900
NmuCI GTSAC 2 cut(s) 151, 1091
NspV TTCGAA 1 cut(s) 1136
PagI TCATGA 1 cut(s) 1161
PaqCI CACCTGC 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 792
PctI GAATGC 3 cut(s) 1056, 1067, 1207
PfeI GAWTC 2 cut(s) 744, 1013
PflMI CCANNNNNTGG 1 cut(s) 1266
PkrI GCNGC 6 cut(s) 250, 508, 511, 697, 784, 964
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PshBI ATTAAT 1 cut(s) 402
Psp6I CCWGG 5 cut(s) 27, 213, 883, 1095, 1185
PspEI GGTNACC 2 cut(s) 1091, 1181
PspGI CCWGG 5 cut(s) 27, 213, 883, 1095, 1185
PspN4I GGNNCC 4 cut(s) 127, 325, 427, 1173
PspPI GGNCC 1 cut(s) 377
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 2 cut(s) 291, 1190
PvuII CAGCTG 2 cut(s) 512, 725
RsaI GTAC 5 cut(s) 325, 680, 956, 983, 1224
RsaNI GTAC 5 cut(s) 324, 679, 955, 982, 1223
RseI CAYNNNNRTG 1 cut(s) 1166
SapI GCTCTTC 1 cut(s) 792
SaqAI TTAA 5 cut(s) 276, 402, 521, 971, 1263
SatI GCNGC 6 cut(s) 249, 507, 510, 696, 783, 963
Sau3AI GATC 5 cut(s) 291, 444, 727, 945, 1190
Sau96I GGNCC 1 cut(s) 377
ScaI AGTACT 1 cut(s) 680
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 5 cut(s) 29, 215, 885, 1097, 1187
SduI GDGCHC 2 cut(s) 430, 473
SfaNI GCATC 4 cut(s) 321, 582, 769, 1101
SfcI CTRYAG 4 cut(s) 96, 156, 507, 669
SfuI TTCGAA 1 cut(s) 1136
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 1166
SmlI CTYRAG 2 cut(s) 77, 532
SmoI CTYRAG 2 cut(s) 77, 532
Sse9I AATT 9 cut(s) 48, 336, 372, 476, 606, 648, 812, 826, 1038
SsiI CCGC 7 cut(s) 202, 289, 551, 685, 935, 962, 965
SspI AATATT 1 cut(s) 879
SspMI CTAG 5 cut(s) 122, 254, 660, 1127, 1277
StyD4I CCNGG 5 cut(s) 27, 213, 883, 1095, 1185
StyI CCWWGG 4 cut(s) 319, 546, 1126, 1206
TaaI ACNGT 3 cut(s) 146, 718, 1153
TaiI ACGT 1 cut(s) 359
TaqI TCGA 3 cut(s) 435, 977, 1136
TasI AATT 9 cut(s) 48, 336, 372, 476, 606, 648, 812, 826, 1038
TatI WGTACW 3 cut(s) 678, 954, 1222
TauI GCSGC 1 cut(s) 965
TfiI GAWTC 2 cut(s) 744, 1013
Tru1I TTAA 5 cut(s) 276, 402, 521, 971, 1263
Tru9I TTAA 5 cut(s) 276, 402, 521, 971, 1263
TscAI CASTG 3 cut(s) 151, 957, 1156
TseFI GTSAC 2 cut(s) 151, 1091
TseI GCWGC 5 cut(s) 248, 506, 509, 695, 782
Tsp45I GTSAC 2 cut(s) 151, 1091
TspDTI ATGAA 5 cut(s) 279, 454, 469, 607, 912
TspRI CASTG 3 cut(s) 151, 957, 1156
Van91I CCANNNNNTGG 1 cut(s) 1266
VpaK11BI GGWCC 1 cut(s) 377
VspI ATTAAT 1 cut(s) 402
XapI RAATTY 2 cut(s) 476, 826
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XmaJI CCTAGG 1 cut(s) 1126
XspI CTAG 5 cut(s) 122, 254, 660, 1127, 1277
ZrmI AGTACT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.